Wall clock time and date at job start Wed Apr 1 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 120.00056 * 2 1 4 4 N 1.34776 * 119.99940 * 180.02562 * 2 1 3 5 5 C 1.39958 * 120.00187 * 185.13767 * 4 2 1 6 6 C 1.38999 * 119.99697 * 33.48743 * 5 4 2 7 7 C 1.38200 * 120.22454 * 179.97438 * 6 5 4 8 8 C 1.38029 * 120.22324 * 0.02562 * 7 6 5 9 9 C 1.39573 * 119.99499 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.11168 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00120 * 173.62181 * 10 9 8 12 12 N 1.34770 * 120.00279 * 353.61820 * 10 9 8 13 13 C 1.46497 * 120.00510 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47000 * 325.00082 * 13 12 10 15 15 C 1.52998 * 109.47352 * 85.00079 * 13 12 10 16 16 C 1.53001 * 109.47336 * 205.00272 * 13 12 10 17 17 C 1.52994 * 109.47243 * 64.99920 * 16 13 12 18 18 H 1.09002 * 109.46828 * 304.99875 * 17 16 13 19 19 C 1.53008 * 109.47303 * 185.00266 * 17 16 13 20 20 N 1.46498 * 109.47208 * 65.00097 * 17 16 13 21 21 C 1.36943 * 119.99679 * 204.99992 * 20 17 16 22 22 H 1.07993 * 120.00400 * 0.02562 * 21 20 17 23 23 C 1.38818 * 119.99678 * 179.97438 * 21 20 17 24 24 N 1.31622 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46891 * 90.00046 * 25 23 21 27 27 H 1.48500 * 109.47173 * 209.99955 * 25 23 21 28 28 H 1.48497 * 109.47070 * 330.00033 * 25 23 21 29 29 C 1.38593 * 120.00353 * 213.76290 * 5 4 2 30 30 C 1.50700 * 120.11139 * 359.97438 * 29 5 4 31 31 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46589 * 299.99657 * 1 2 3 33 33 H 1.09001 * 109.47111 * 59.99667 * 1 2 3 34 34 H 0.96998 * 120.00078 * 5.14642 * 4 2 1 35 35 H 1.08005 * 119.88754 * 0.02562 * 6 5 4 36 36 H 1.08001 * 119.88996 * 179.97438 * 7 6 5 37 37 H 1.08003 * 120.00115 * 180.02562 * 8 7 6 38 38 H 0.97006 * 119.99870 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47065 * 60.00120 * 15 13 12 40 40 H 1.09000 * 109.47600 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.46915 * 300.00463 * 15 13 12 42 42 H 1.09001 * 109.47496 * 184.99952 * 16 13 12 43 43 H 1.09004 * 109.47316 * 304.99727 * 16 13 12 44 44 H 1.09000 * 109.46986 * 59.99756 * 19 17 16 45 45 H 1.08998 * 109.47250 * 180.02562 * 19 17 16 46 46 H 1.08996 * 109.46514 * 299.99802 * 19 17 16 47 47 H 0.96995 * 120.00405 * 25.00037 * 20 17 16 48 48 H 0.96992 * 120.00362 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.46965 * 263.17552 * 30 29 5 50 50 H 1.09000 * 109.47146 * 23.17020 * 30 29 5 51 51 H 1.08992 * 109.47427 * 143.17176 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5762 -1.1697 0.1080 6 6 4.2159 -0.1981 0.8688 7 6 5.5934 -0.1965 0.9797 8 6 6.3434 -1.1594 0.3351 9 6 5.7107 -2.1395 -0.4312 10 6 6.5116 -3.1725 -1.1223 11 8 5.9565 -4.0913 -1.6926 12 7 7.8571 -3.0956 -1.1199 13 6 8.6507 -4.1194 -1.8041 14 1 8.1576 -5.0866 -1.7065 15 6 8.7791 -3.7596 -3.2856 16 6 10.0431 -4.1910 -1.1741 17 6 9.9238 -4.6717 0.2735 18 1 9.2343 -4.0245 0.8155 19 6 11.2995 -4.6244 0.9416 20 7 9.4193 -6.0469 0.2914 21 6 8.7553 -6.5183 1.3924 22 1 8.6033 -5.8762 2.2474 23 6 8.2767 -7.8212 1.4092 24 7 8.4606 -8.6033 0.3667 25 14 7.3704 -8.4641 2.9108 26 1 5.9171 -8.1958 2.7643 27 1 7.5937 -9.9269 3.0351 28 1 7.8799 -7.7805 4.1267 29 6 4.3206 -2.1376 -0.5477 30 6 3.6301 -3.1889 -1.3778 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 1.6988 -2.0055 -0.0762 35 1 3.6343 0.5577 1.3758 36 1 6.0848 0.5613 1.5719 37 1 7.4198 -1.1550 0.4246 38 1 8.3002 -2.3621 -0.6651 39 1 9.2722 -2.7924 -3.3832 40 1 9.3692 -4.5216 -3.7948 41 1 7.7871 -3.7086 -3.7344 42 1 10.6620 -4.8884 -1.7386 43 1 10.5013 -3.2021 -1.1920 44 1 11.6749 -3.6012 0.9283 45 1 11.2146 -4.9673 1.9728 46 1 11.9890 -5.2715 0.3995 47 1 9.5554 -6.6235 -0.4765 48 1 8.1266 -9.5139 0.3785 49 1 3.5075 -4.0962 -0.7863 50 1 2.6515 -2.8222 -1.6877 51 1 4.2318 -3.4086 -2.2597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135944092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:12 Heat of formation + Delta-G solvation = -40.389377 kcal Electronic energy + Delta-G solvation = -31149.660201 eV Core-core repulsion = 27049.062007 eV Total energy + Delta-G solvation = -4100.598195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95945 -39.80996 -38.23478 -36.74012 -35.14828 -34.47704 -32.45565 -32.22637 -31.48597 -30.49033 -28.82011 -28.53249 -26.92739 -26.28451 -24.10399 -23.56532 -22.23232 -21.29524 -20.72711 -20.00521 -19.66304 -18.31642 -17.36020 -17.11748 -16.22608 -16.10535 -15.98034 -15.46294 -14.93256 -14.73166 -14.66467 -14.30605 -13.88357 -13.80938 -13.72047 -13.40161 -13.25916 -13.06605 -12.91669 -12.67983 -12.65290 -12.33805 -12.15138 -12.07515 -12.01137 -11.84563 -11.70885 -11.54257 -11.37252 -11.01517 -10.79962 -10.61521 -10.57744 -10.38757 -10.22197 -10.19591 -9.86700 -9.58614 -9.30083 -8.90337 -8.84505 -8.58367 -8.26692 -6.88469 -5.69717 -2.97354 0.87158 1.14503 2.24629 2.75202 3.11300 3.46993 3.47839 3.52161 3.53411 3.88184 4.35285 4.65028 4.70270 4.73993 4.79015 4.86546 4.96795 5.01904 5.17012 5.25480 5.32387 5.42596 5.44318 5.51965 5.59151 5.64463 5.72489 5.73503 5.85834 5.92367 5.97361 6.03470 6.05474 6.16024 6.17733 6.20626 6.31873 6.33117 6.38263 6.44978 6.50754 6.60017 6.75456 6.83241 6.85713 6.96910 7.07312 7.10382 7.75796 7.76843 7.83690 8.48693 8.57084 9.60062 10.17559 10.51828 11.53078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003042 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.001777 B = 9201.240628 C =10376.222479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.530 6.530 4 N -0.669 5.669 5 C 0.128 3.872 6 C -0.095 4.095 7 C -0.117 4.117 8 C -0.094 4.094 9 C -0.113 4.113 10 C 0.559 3.441 11 O -0.524 6.524 12 N -0.710 5.710 13 C 0.144 3.856 14 H 0.107 0.893 15 C -0.161 4.161 16 C -0.131 4.131 17 C 0.171 3.829 18 H 0.046 0.954 19 C -0.165 4.165 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.047 4.047 30 C -0.120 4.120 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.413 0.587 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.393 0.607 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 18.594 -3.312 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.406 6.406 4 N -0.315 5.315 5 C 0.034 3.966 6 C -0.115 4.115 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.117 4.117 10 C 0.346 3.654 11 O -0.401 6.401 12 N -0.361 5.361 13 C 0.041 3.959 14 H 0.125 0.875 15 C -0.219 4.219 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.063 0.937 19 C -0.226 4.226 20 N -0.361 5.361 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 C -0.050 4.050 30 C -0.176 4.176 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.227 0.773 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.068 0.932 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.882 18.643 -3.565 21.399 hybrid contribution -0.390 -0.685 0.949 1.234 sum -10.272 17.958 -2.616 20.853 Atomic orbital electron populations 1.21860 0.90696 1.04693 1.05692 1.21021 0.90908 0.83128 0.75122 1.90742 1.70504 1.31226 1.48105 1.43696 1.05227 1.10010 1.72615 1.17421 0.82719 0.97946 0.98487 1.21226 0.94943 0.98318 0.97064 1.20917 0.93253 0.99036 1.00319 1.21295 1.00000 0.93751 0.96262 1.19685 0.93015 0.97492 1.01513 1.18057 0.82325 0.84940 0.80108 1.90741 1.70602 1.34000 1.44807 1.45886 1.05709 1.28669 1.55877 1.21042 0.91779 0.93089 0.90027 0.87515 1.22185 1.01934 1.01145 0.96644 1.22176 0.95326 1.01075 0.98434 1.20223 0.93104 0.88457 0.92082 0.93651 1.22460 0.99619 0.98724 1.01766 1.42387 1.66690 1.08332 1.18724 1.19150 1.27420 0.95324 0.94444 0.91562 1.24684 1.01764 0.96812 0.97552 1.69644 1.51530 1.07580 1.29270 0.86267 0.79855 0.77997 0.82553 1.21846 1.21869 1.20918 1.19778 0.92258 0.96852 0.96155 1.21013 0.98999 0.96319 1.01235 0.90216 0.88268 0.88347 0.75011 0.84710 0.85151 0.85416 0.77261 0.93166 0.91723 0.92528 0.90574 0.92081 0.94730 0.92919 0.93538 0.78347 0.93644 0.90193 0.93194 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.39 36.01 0.37 -0.45 16 2 C 0.51 4.86 7.68 -10.98 -0.08 4.77 16 3 O -0.53 -7.17 14.79 5.55 0.08 -7.09 16 4 N -0.67 -6.35 4.76 -9.89 -0.05 -6.40 16 5 C 0.13 1.60 6.25 -83.73 -0.52 1.07 16 6 C -0.10 -1.18 8.65 -39.31 -0.34 -1.52 16 7 C -0.12 -1.31 10.02 -39.67 -0.40 -1.71 16 8 C -0.09 -1.13 9.52 -39.16 -0.37 -1.50 16 9 C -0.11 -1.65 5.87 -104.99 -0.62 -2.27 16 10 C 0.56 9.41 7.66 -12.33 -0.09 9.32 16 11 O -0.52 -10.52 13.03 5.32 0.07 -10.45 16 12 N -0.71 -10.54 4.40 -54.75 -0.24 -10.78 16 13 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 14 H 0.11 2.25 7.05 -51.93 -0.37 1.88 16 15 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 16 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 17 C 0.17 3.23 2.84 -67.93 -0.19 3.03 16 18 H 0.05 0.88 7.56 -51.93 -0.39 0.48 16 19 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 20 N -0.72 -17.56 4.49 -53.42 -0.24 -17.80 16 21 C -0.23 -6.43 9.93 -15.05 -0.15 -6.58 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 25 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 C -0.05 -0.65 5.93 -104.02 -0.62 -1.27 16 30 C -0.12 -1.57 8.30 36.01 0.30 -1.28 16 31 H 0.08 0.21 7.92 -51.93 -0.41 -0.20 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.41 2.82 7.49 -40.82 -0.31 2.51 16 35 H 0.14 1.65 6.41 -52.48 -0.34 1.32 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.24 6.45 -52.48 -0.34 0.91 16 38 H 0.39 4.71 6.67 -40.82 -0.27 4.44 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.38 10.03 7.80 -40.82 -0.32 9.72 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.50 6.81 -51.93 -0.35 0.15 16 51 H 0.10 1.54 5.91 -51.93 -0.31 1.24 16 LS Contribution 413.56 15.07 6.23 6.23 Total: -1.00 -35.56 413.56 -8.86 -44.42 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -8.02 Total: 14.86 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.39 Total: -3.16 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.20 Total: -62.67 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.15 Total: -17.54 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.56 -8.86 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.026 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds