Wall clock time and date at job start Wed Apr 1 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 120.00056 * 2 1 4 4 N 1.34776 * 119.99940 * 180.02562 * 2 1 3 5 5 C 1.39958 * 120.00187 * 185.13767 * 4 2 1 6 6 C 1.38999 * 119.99697 * 33.48743 * 5 4 2 7 7 C 1.38200 * 120.22454 * 179.97438 * 6 5 4 8 8 C 1.38029 * 120.22324 * 0.02562 * 7 6 5 9 9 C 1.39573 * 119.99499 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.11168 * 180.02562 * 9 8 7 11 11 O 1.21554 * 120.00120 * 173.62181 * 10 9 8 12 12 N 1.34770 * 120.00279 * 353.61820 * 10 9 8 13 13 C 1.46497 * 120.00510 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47000 * 325.00082 * 13 12 10 15 15 C 1.52998 * 109.47352 * 85.00079 * 13 12 10 16 16 C 1.53001 * 109.47336 * 205.00272 * 13 12 10 17 17 C 1.52994 * 109.47243 * 64.99920 * 16 13 12 18 18 H 1.09002 * 109.46828 * 304.99875 * 17 16 13 19 19 C 1.53008 * 109.47303 * 185.00266 * 17 16 13 20 20 N 1.46498 * 109.47208 * 65.00097 * 17 16 13 21 21 C 1.36943 * 119.99679 * 204.99992 * 20 17 16 22 22 H 1.07993 * 120.00400 * 0.02562 * 21 20 17 23 23 C 1.38818 * 119.99678 * 179.97438 * 21 20 17 24 24 N 1.31622 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.46891 * 90.00046 * 25 23 21 27 27 H 1.48500 * 109.47173 * 209.99955 * 25 23 21 28 28 H 1.48497 * 109.47070 * 330.00033 * 25 23 21 29 29 C 1.38593 * 120.00353 * 213.76290 * 5 4 2 30 30 C 1.50700 * 120.11139 * 359.97438 * 29 5 4 31 31 H 1.08996 * 109.46949 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46589 * 299.99657 * 1 2 3 33 33 H 1.09001 * 109.47111 * 59.99667 * 1 2 3 34 34 H 0.96998 * 120.00078 * 5.14642 * 4 2 1 35 35 H 1.08005 * 119.88754 * 0.02562 * 6 5 4 36 36 H 1.08001 * 119.88996 * 179.97438 * 7 6 5 37 37 H 1.08003 * 120.00115 * 180.02562 * 8 7 6 38 38 H 0.97006 * 119.99870 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47065 * 60.00120 * 15 13 12 40 40 H 1.09000 * 109.47600 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.46915 * 300.00463 * 15 13 12 42 42 H 1.09001 * 109.47496 * 184.99952 * 16 13 12 43 43 H 1.09004 * 109.47316 * 304.99727 * 16 13 12 44 44 H 1.09000 * 109.46986 * 59.99756 * 19 17 16 45 45 H 1.08998 * 109.47250 * 180.02562 * 19 17 16 46 46 H 1.08996 * 109.46514 * 299.99802 * 19 17 16 47 47 H 0.96995 * 120.00405 * 25.00037 * 20 17 16 48 48 H 0.96992 * 120.00362 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.46965 * 263.17552 * 30 29 5 50 50 H 1.09000 * 109.47146 * 23.17020 * 30 29 5 51 51 H 1.08992 * 109.47427 * 143.17176 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5762 -1.1697 0.1080 6 6 4.2159 -0.1981 0.8688 7 6 5.5934 -0.1965 0.9797 8 6 6.3434 -1.1594 0.3351 9 6 5.7107 -2.1395 -0.4312 10 6 6.5116 -3.1725 -1.1223 11 8 5.9565 -4.0913 -1.6926 12 7 7.8571 -3.0956 -1.1199 13 6 8.6507 -4.1194 -1.8041 14 1 8.1576 -5.0866 -1.7065 15 6 8.7791 -3.7596 -3.2856 16 6 10.0431 -4.1910 -1.1741 17 6 9.9238 -4.6717 0.2735 18 1 9.2343 -4.0245 0.8155 19 6 11.2995 -4.6244 0.9416 20 7 9.4193 -6.0469 0.2914 21 6 8.7553 -6.5183 1.3924 22 1 8.6033 -5.8762 2.2474 23 6 8.2767 -7.8212 1.4092 24 7 8.4606 -8.6033 0.3667 25 14 7.3704 -8.4641 2.9108 26 1 5.9171 -8.1958 2.7643 27 1 7.5937 -9.9269 3.0351 28 1 7.8799 -7.7805 4.1267 29 6 4.3206 -2.1376 -0.5477 30 6 3.6301 -3.1889 -1.3778 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 1.6988 -2.0055 -0.0762 35 1 3.6343 0.5577 1.3758 36 1 6.0848 0.5613 1.5719 37 1 7.4198 -1.1550 0.4246 38 1 8.3002 -2.3621 -0.6651 39 1 9.2722 -2.7924 -3.3832 40 1 9.3692 -4.5216 -3.7948 41 1 7.7871 -3.7086 -3.7344 42 1 10.6620 -4.8884 -1.7386 43 1 10.5013 -3.2021 -1.1920 44 1 11.6749 -3.6012 0.9283 45 1 11.2146 -4.9673 1.9728 46 1 11.9890 -5.2715 0.3995 47 1 9.5554 -6.6235 -0.4765 48 1 8.1266 -9.5139 0.3785 49 1 3.5075 -4.0962 -0.7863 50 1 2.6515 -2.8222 -1.6877 51 1 4.2318 -3.4086 -2.2597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135944092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:11 Heat of formation + Delta-G solvation = -64.512161 kcal Electronic energy + Delta-G solvation = -31150.706244 eV Core-core repulsion = 27049.062007 eV Total energy + Delta-G solvation = -4101.644237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90026 -40.91592 -39.28679 -38.19124 -36.19436 -35.91585 -34.04244 -33.45063 -32.65376 -31.42757 -30.41356 -29.58885 -27.91952 -27.56851 -25.66781 -25.10601 -23.24704 -22.26052 -21.97118 -21.14735 -21.07790 -19.42372 -19.08958 -18.11921 -17.33446 -17.21996 -16.87507 -16.70496 -16.40272 -16.09300 -15.75413 -15.52407 -15.42886 -15.20777 -14.79332 -14.53206 -14.45862 -14.30707 -14.10603 -13.59716 -13.49748 -13.42812 -13.27391 -13.22829 -13.13526 -13.03469 -12.94400 -12.85259 -12.77182 -12.63946 -12.32467 -12.22418 -12.17016 -11.80377 -11.54170 -11.49570 -11.40184 -11.07271 -10.90523 -10.57911 -10.08064 -9.72900 -9.18615 -8.92798 -7.90363 -5.15398 -0.16784 0.19787 1.42796 1.45087 1.48129 1.52173 1.92650 2.03273 2.31814 2.57303 2.82098 3.44012 3.66204 3.72596 3.81531 3.85498 3.96593 4.02596 4.05730 4.16142 4.31710 4.41098 4.44607 4.51541 4.56621 4.62030 4.65104 4.70078 4.73708 4.74502 4.80677 4.85016 4.95799 5.05095 5.05686 5.12133 5.14904 5.17030 5.24239 5.30222 5.36204 5.38253 5.43142 5.48691 5.54418 5.64963 5.70225 5.88965 6.32890 6.36053 6.64548 7.04400 7.34318 7.38622 8.19069 8.38767 9.33446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003042 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.001777 B = 9201.240628 C =10376.222479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.506 3.494 3 O -0.573 6.573 4 N -0.664 5.664 5 C 0.125 3.875 6 C -0.103 4.103 7 C -0.110 4.110 8 C -0.092 4.092 9 C -0.135 4.135 10 C 0.550 3.450 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.148 3.852 14 H 0.049 0.951 15 C -0.151 4.151 16 C -0.119 4.119 17 C 0.163 3.837 18 H 0.043 0.957 19 C -0.156 4.156 20 N -0.731 5.731 21 C -0.223 4.223 22 H 0.069 0.931 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.268 1.268 29 C -0.066 4.066 30 C -0.111 4.111 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.425 0.575 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.409 0.591 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.370 0.630 48 H 0.247 0.753 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 21.430 -2.347 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.452 6.452 4 N -0.311 5.311 5 C 0.030 3.970 6 C -0.124 4.124 7 C -0.129 4.129 8 C -0.111 4.111 9 C -0.139 4.139 10 C 0.339 3.661 11 O -0.450 6.450 12 N -0.351 5.351 13 C 0.044 3.956 14 H 0.068 0.932 15 C -0.209 4.209 16 C -0.157 4.157 17 C 0.056 3.944 18 H 0.061 0.939 19 C -0.216 4.216 20 N -0.371 5.371 21 C -0.355 4.355 22 H 0.086 0.914 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.193 1.193 29 C -0.069 4.069 30 C -0.167 4.167 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.170 0.830 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.202 0.798 48 H 0.056 0.944 49 H 0.082 0.918 50 H 0.097 0.903 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.635 21.533 -2.569 23.729 hybrid contribution -0.455 -1.441 0.652 1.646 sum -10.089 20.091 -1.917 22.564 Atomic orbital electron populations 1.21916 0.86734 1.06793 1.06622 1.21906 0.92658 0.82163 0.73552 1.90717 1.71739 1.32641 1.50136 1.43780 1.04205 1.10952 1.72148 1.17531 0.84137 0.97358 0.97971 1.21437 0.95735 0.98168 0.97021 1.21276 0.92859 0.99070 0.99651 1.21542 1.01304 0.92915 0.95336 1.19697 0.93320 0.98016 1.02849 1.18541 0.82957 0.84930 0.79705 1.90725 1.71502 1.35934 1.46795 1.45767 1.05177 1.28656 1.55494 1.20839 0.91802 0.90992 0.91997 0.93244 1.22084 1.01362 1.02935 0.94543 1.22088 0.94770 1.03327 0.95506 1.20521 0.93616 0.85486 0.94826 0.93900 1.22309 0.98249 1.01217 0.99834 1.42592 1.66687 1.10489 1.17316 1.19486 1.25838 0.95114 0.95064 0.91352 1.25417 1.03828 0.97578 1.00218 1.69797 1.53524 1.07512 1.31216 0.85323 0.78282 0.77157 0.80202 1.22348 1.22236 1.19333 1.19891 0.92474 0.97580 0.97001 1.20862 1.00030 0.95918 0.99921 0.87608 0.87126 0.87380 0.73590 0.84611 0.82036 0.82969 0.75325 0.90095 0.91113 0.94385 0.90485 0.87533 0.90451 0.95207 0.93943 0.79841 0.94429 0.91785 0.90340 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.39 71.24 0.74 -0.42 16 2 C 0.51 8.95 7.68 87.66 0.67 9.62 16 3 O -0.57 -15.07 14.79 -3.05 -0.05 -15.12 16 4 N -0.66 -11.88 4.76 -303.59 -1.44 -13.32 16 5 C 0.12 3.03 6.25 38.11 0.24 3.27 16 6 C -0.10 -2.42 8.65 22.44 0.19 -2.23 16 7 C -0.11 -2.23 10.02 22.21 0.22 -2.01 16 8 C -0.09 -2.05 9.52 22.54 0.21 -1.83 16 9 C -0.14 -3.94 5.87 -20.10 -0.12 -4.06 16 10 C 0.55 19.06 7.66 86.79 0.67 19.73 16 11 O -0.57 -24.41 13.03 -3.89 -0.05 -24.46 16 12 N -0.70 -20.29 4.40 -445.41 -1.96 -22.25 16 13 C 0.15 4.74 2.52 44.99 0.11 4.85 16 14 H 0.05 2.19 7.05 -2.39 -0.02 2.18 16 15 C -0.15 -4.01 9.48 71.98 0.68 -3.32 16 16 C -0.12 -3.32 4.29 30.59 0.13 -3.19 16 17 C 0.16 5.92 2.84 44.99 0.13 6.05 16 18 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 19 C -0.16 -5.05 9.49 71.98 0.68 -4.37 16 20 N -0.73 -36.18 4.49 -322.93 -1.45 -37.63 16 21 C -0.22 -12.51 9.93 84.03 0.83 -11.67 16 22 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 23 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 24 N -0.97 -61.18 13.06 21.65 0.28 -60.90 16 25 Si 0.96 48.03 29.55 68.60 2.03 50.05 16 26 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 C -0.07 -1.86 5.93 -19.48 -0.12 -1.97 16 30 C -0.11 -3.07 8.30 71.24 0.59 -2.48 16 31 H 0.11 0.21 7.92 -2.39 -0.02 0.19 16 32 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.42 5.25 7.49 -92.71 -0.69 4.55 16 35 H 0.14 3.17 6.41 -2.91 -0.02 3.15 16 36 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.15 2.50 6.45 -2.91 -0.02 2.48 16 38 H 0.41 8.84 6.67 -92.70 -0.62 8.22 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.37 20.05 7.80 -92.71 -0.72 19.33 16 48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 49 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 1.60 6.81 -2.39 -0.02 1.58 16 51 H 0.07 2.49 5.91 -2.39 -0.01 2.47 16 Total: -1.00 -82.40 413.56 2.64 -79.76 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.07 Total: 42.08 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.34 Total: 1.78 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -4.57 Total: -134.10 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.57 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -82.40 2.64 -79.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.247 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds