Wall clock time and date at job start Wed Apr 1 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99395 * 2 1 4 4 N 1.34769 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.39956 * 120.00114 * 185.06115 * 4 2 1 6 6 C 1.38988 * 119.99924 * 326.05643 * 5 4 2 7 7 C 1.38214 * 120.22541 * 179.97438 * 6 5 4 8 8 C 1.38019 * 120.21919 * 0.02562 * 7 6 5 9 9 C 1.39577 * 119.99905 * 359.97438 * 8 7 6 10 10 C 1.47859 * 120.11139 * 179.97438 * 9 8 7 11 11 O 1.21552 * 120.00117 * 176.33150 * 10 9 8 12 12 N 1.34772 * 120.00339 * 356.33738 * 10 9 8 13 13 C 1.46501 * 120.00222 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47107 * 34.99702 * 13 12 10 15 15 C 1.53003 * 109.47063 * 274.99476 * 13 12 10 16 16 C 1.53004 * 109.47256 * 154.99879 * 13 12 10 17 17 C 1.53004 * 109.47071 * 295.00136 * 16 13 12 18 18 H 1.09002 * 109.47416 * 54.99335 * 17 16 13 19 19 C 1.52993 * 109.47032 * 175.00208 * 17 16 13 20 20 N 1.46503 * 109.46611 * 294.99811 * 17 16 13 21 21 C 1.36933 * 119.99725 * 155.00051 * 20 17 16 22 22 H 1.08002 * 120.00513 * 359.97438 * 21 20 17 23 23 C 1.38814 * 120.00286 * 180.02562 * 21 20 17 24 24 N 1.31626 * 119.99738 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00336 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47413 * 89.99586 * 25 23 21 27 27 H 1.48500 * 109.46990 * 209.99730 * 25 23 21 28 28 H 1.48499 * 109.47096 * 329.99350 * 25 23 21 29 29 C 1.38598 * 120.00121 * 146.07590 * 5 4 2 30 30 C 1.50699 * 120.10634 * 0.02562 * 29 5 4 31 31 H 1.08996 * 109.47130 * 240.00228 * 1 2 3 32 32 H 1.08996 * 109.47286 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47191 * 120.00769 * 1 2 3 34 34 H 0.97006 * 120.00298 * 5.06766 * 4 2 1 35 35 H 1.08001 * 119.88698 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.88962 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.00256 * 179.72388 * 8 7 6 38 38 H 0.97008 * 119.99803 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.46413 * 60.00234 * 15 13 12 40 40 H 1.08991 * 109.47175 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47012 * 300.00425 * 15 13 12 42 42 H 1.09001 * 109.47012 * 54.99466 * 16 13 12 43 43 H 1.08991 * 109.47245 * 174.99968 * 16 13 12 44 44 H 1.09006 * 109.47201 * 299.99567 * 19 17 16 45 45 H 1.08998 * 109.47320 * 59.99594 * 19 17 16 46 46 H 1.09003 * 109.47121 * 179.97438 * 19 17 16 47 47 H 0.97001 * 120.00030 * 335.00078 * 20 17 16 48 48 H 0.96998 * 120.00078 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.47364 * 97.44828 * 30 29 5 50 50 H 1.09000 * 109.46825 * 217.44105 * 30 29 5 51 51 H 1.09001 * 109.47594 * 337.44266 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5764 -1.1694 0.1074 6 6 4.3189 -0.1436 -0.4654 7 6 5.6972 -0.1410 -0.3621 8 6 6.3454 -1.1573 0.3100 9 6 5.6089 -2.1920 0.8888 10 6 6.3008 -3.2824 1.6089 11 8 5.6549 -4.1465 2.1691 12 7 7.6476 -3.3182 1.6444 13 6 8.3331 -4.3988 2.3575 14 1 7.7636 -5.3222 2.2521 15 6 8.4500 -4.0380 3.8398 16 6 9.7317 -4.5920 1.7679 17 6 9.6130 -5.0737 0.3206 18 1 8.9954 -4.3760 -0.2451 19 6 11.0058 -5.1475 -0.3082 20 7 8.9956 -6.4021 0.2972 21 6 8.3254 -6.8259 -0.8192 22 1 8.2516 -6.1809 -1.6823 23 6 7.7399 -8.0844 -0.8413 24 7 7.8293 -8.8704 0.2107 25 14 6.8263 -8.6629 -2.3645 26 1 7.7712 -9.3596 -3.2738 27 1 5.7425 -9.5970 -1.9667 28 1 6.2387 -7.4921 -3.0638 29 6 4.2179 -2.1948 0.7842 30 6 3.4152 -3.3088 1.4053 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0276 -0.0005 33 1 -0.3633 -0.5139 -0.8899 34 1 1.6988 -2.0056 -0.0733 35 1 3.8172 0.6546 -0.9922 36 1 6.2688 0.6586 -0.8096 37 1 7.4229 -1.1541 0.3847 38 1 8.1630 -2.6287 1.1972 39 1 7.4535 -3.9003 4.2598 40 1 8.9604 -4.8417 4.3702 41 1 9.0194 -3.1145 3.9451 42 1 10.2704 -3.6448 1.7925 43 1 10.2739 -5.3337 2.3543 44 1 11.4652 -4.1592 -0.2908 45 1 11.6233 -5.8453 0.2574 46 1 10.9212 -5.4911 -1.3392 47 1 9.0615 -6.9813 1.0725 48 1 7.4205 -9.7499 0.1952 49 1 3.4000 -4.1653 0.7312 50 1 3.8698 -3.5998 2.3522 51 1 2.3952 -2.9672 1.5817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135944093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:16 Heat of formation + Delta-G solvation = -38.693335 kcal Electronic energy + Delta-G solvation = -31181.628648 eV Core-core repulsion = 27081.104000 eV Total energy + Delta-G solvation = -4100.524649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95759 -39.81385 -38.22505 -36.74392 -35.14593 -34.48322 -32.42128 -32.22852 -31.48660 -30.49408 -28.80402 -28.53337 -26.90608 -26.28442 -24.08415 -23.56791 -22.23228 -21.27809 -20.73025 -20.02264 -19.66360 -18.30901 -17.37909 -17.11904 -16.22844 -16.09401 -15.94107 -15.48650 -14.90575 -14.75927 -14.63124 -14.27426 -13.89222 -13.79757 -13.71537 -13.39100 -13.29188 -13.03019 -12.92487 -12.68834 -12.65669 -12.33318 -12.14102 -12.06122 -12.02132 -11.87334 -11.71137 -11.53582 -11.35690 -11.00962 -10.81676 -10.59845 -10.56422 -10.39447 -10.20077 -10.14410 -9.86890 -9.58911 -9.24548 -8.88587 -8.84872 -8.58788 -8.26487 -6.88822 -5.70074 -2.97674 0.88643 1.15720 2.24442 2.75543 3.11172 3.46203 3.47312 3.51570 3.53145 3.89414 4.35874 4.64554 4.73815 4.78420 4.84060 4.86990 4.93642 5.03679 5.16856 5.26687 5.34727 5.43688 5.46064 5.51840 5.62499 5.64260 5.72301 5.75007 5.88803 5.92547 5.97391 6.03801 6.06726 6.15892 6.20024 6.22015 6.31754 6.34570 6.38159 6.45547 6.53893 6.59865 6.75950 6.85299 6.87345 6.97284 7.08666 7.10226 7.75419 7.77632 7.83342 8.48326 8.57438 9.59684 10.17194 10.51559 11.52712 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.003128 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.997163 B = 8949.740995 C =10277.712665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.530 6.530 4 N -0.669 5.669 5 C 0.125 3.875 6 C -0.097 4.097 7 C -0.119 4.119 8 C -0.094 4.094 9 C -0.115 4.115 10 C 0.560 3.440 11 O -0.524 6.524 12 N -0.710 5.710 13 C 0.144 3.856 14 H 0.107 0.893 15 C -0.161 4.161 16 C -0.131 4.131 17 C 0.171 3.829 18 H 0.046 0.954 19 C -0.165 4.165 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.284 1.284 29 C -0.045 4.045 30 C -0.128 4.128 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.393 0.607 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.078 0.922 50 H 0.110 0.890 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 18.842 2.624 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.406 6.406 4 N -0.315 5.315 5 C 0.032 3.968 6 C -0.117 4.117 7 C -0.138 4.138 8 C -0.114 4.114 9 C -0.119 4.119 10 C 0.347 3.653 11 O -0.402 6.402 12 N -0.361 5.361 13 C 0.041 3.959 14 H 0.125 0.875 15 C -0.219 4.219 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.064 0.936 19 C -0.226 4.226 20 N -0.361 5.361 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 C -0.048 4.048 30 C -0.184 4.184 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.250 0.750 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.227 0.773 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.128 0.872 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.318 18.944 2.895 20.892 hybrid contribution -0.353 -0.691 -1.023 1.284 sum -8.671 18.253 1.873 20.295 Atomic orbital electron populations 1.21931 0.90653 1.05978 1.04729 1.21014 0.90928 0.83076 0.75103 1.90711 1.70487 1.31348 1.48028 1.43566 1.05268 1.10099 1.72591 1.17453 0.82615 0.97195 0.99580 1.21431 0.93798 0.98386 0.98087 1.20940 0.93944 0.98839 1.00035 1.21284 0.99715 0.93510 0.96845 1.19660 0.93050 0.96796 1.02406 1.18068 0.82375 0.84746 0.80094 1.90701 1.64835 1.38713 1.45977 1.45901 1.05873 1.29072 1.55259 1.21047 0.93751 0.91431 0.89719 0.87505 1.22186 1.01872 1.01240 0.96614 1.22175 0.95144 1.01074 0.98611 1.20225 0.92311 0.89132 0.92214 0.93630 1.22459 0.99364 0.98962 1.01783 1.42387 1.63573 1.13135 1.17031 1.19150 1.25664 0.98255 0.93251 0.91570 1.24681 1.01589 0.97146 0.97391 1.69648 1.49879 1.09842 1.28652 0.86264 0.79395 0.78300 0.82702 1.21897 1.21846 1.20939 1.19795 0.92983 0.96402 0.95606 1.21142 0.97483 0.95561 1.04228 0.88940 0.88546 0.88992 0.74988 0.84043 0.85204 0.85521 0.77257 0.92504 0.91721 0.93173 0.92086 0.90572 0.94727 0.93536 0.92926 0.78347 0.93646 0.90351 0.87222 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.32 36.01 0.37 -0.50 16 2 C 0.51 4.93 7.79 -10.99 -0.09 4.84 16 3 O -0.53 -7.15 14.43 5.55 0.08 -7.07 16 4 N -0.67 -6.45 4.75 -9.89 -0.05 -6.50 16 5 C 0.13 1.58 6.30 -83.74 -0.53 1.05 16 6 C -0.10 -1.21 8.71 -39.31 -0.34 -1.55 16 7 C -0.12 -1.34 10.02 -39.67 -0.40 -1.74 16 8 C -0.09 -1.13 9.53 -39.16 -0.37 -1.50 16 9 C -0.12 -1.68 5.87 -104.99 -0.62 -2.30 16 10 C 0.56 9.41 7.71 -12.32 -0.09 9.31 16 11 O -0.52 -10.48 12.89 5.32 0.07 -10.41 16 12 N -0.71 -10.50 4.40 -54.74 -0.24 -10.74 16 13 C 0.14 2.31 2.52 -67.93 -0.17 2.14 16 14 H 0.11 2.24 7.05 -51.93 -0.37 1.88 16 15 C -0.16 -2.20 9.48 37.16 0.35 -1.84 16 16 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 17 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 18 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 19 C -0.17 -2.88 9.49 37.15 0.35 -2.53 16 20 N -0.72 -17.53 4.49 -53.42 -0.24 -17.77 16 21 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 25 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 C -0.04 -0.62 5.93 -104.02 -0.62 -1.24 16 30 C -0.13 -1.73 8.48 36.01 0.31 -1.42 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.41 2.91 7.65 -40.82 -0.31 2.59 16 35 H 0.14 1.79 6.11 -52.49 -0.32 1.47 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.19 6.41 -52.48 -0.34 0.86 16 38 H 0.39 4.70 6.65 -40.82 -0.27 4.43 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.11 1.73 5.62 -51.93 -0.29 1.44 16 51 H 0.05 0.52 6.78 -51.93 -0.35 0.16 16 LS Contribution 413.12 15.07 6.23 6.23 Total: -1.00 -35.28 413.12 -8.85 -44.14 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -8.00 Total: 15.30 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.40 Total: -3.35 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 0.20 Total: -62.64 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.15 Total: -17.48 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.28 -8.85 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.442 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds