Wall clock time and date at job start Wed Apr 1 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99395 * 2 1 4 4 N 1.34769 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.39956 * 120.00114 * 185.06115 * 4 2 1 6 6 C 1.38988 * 119.99924 * 326.05643 * 5 4 2 7 7 C 1.38214 * 120.22541 * 179.97438 * 6 5 4 8 8 C 1.38019 * 120.21919 * 0.02562 * 7 6 5 9 9 C 1.39577 * 119.99905 * 359.97438 * 8 7 6 10 10 C 1.47859 * 120.11139 * 179.97438 * 9 8 7 11 11 O 1.21552 * 120.00117 * 176.33150 * 10 9 8 12 12 N 1.34772 * 120.00339 * 356.33738 * 10 9 8 13 13 C 1.46501 * 120.00222 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47107 * 34.99702 * 13 12 10 15 15 C 1.53003 * 109.47063 * 274.99476 * 13 12 10 16 16 C 1.53004 * 109.47256 * 154.99879 * 13 12 10 17 17 C 1.53004 * 109.47071 * 295.00136 * 16 13 12 18 18 H 1.09002 * 109.47416 * 54.99335 * 17 16 13 19 19 C 1.52993 * 109.47032 * 175.00208 * 17 16 13 20 20 N 1.46503 * 109.46611 * 294.99811 * 17 16 13 21 21 C 1.36933 * 119.99725 * 155.00051 * 20 17 16 22 22 H 1.08002 * 120.00513 * 359.97438 * 21 20 17 23 23 C 1.38814 * 120.00286 * 180.02562 * 21 20 17 24 24 N 1.31626 * 119.99738 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00336 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47413 * 89.99586 * 25 23 21 27 27 H 1.48500 * 109.46990 * 209.99730 * 25 23 21 28 28 H 1.48499 * 109.47096 * 329.99350 * 25 23 21 29 29 C 1.38598 * 120.00121 * 146.07590 * 5 4 2 30 30 C 1.50699 * 120.10634 * 0.02562 * 29 5 4 31 31 H 1.08996 * 109.47130 * 240.00228 * 1 2 3 32 32 H 1.08996 * 109.47286 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.47191 * 120.00769 * 1 2 3 34 34 H 0.97006 * 120.00298 * 5.06766 * 4 2 1 35 35 H 1.08001 * 119.88698 * 0.02562 * 6 5 4 36 36 H 1.07993 * 119.88962 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.00256 * 179.72388 * 8 7 6 38 38 H 0.97008 * 119.99803 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.46413 * 60.00234 * 15 13 12 40 40 H 1.08991 * 109.47175 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47012 * 300.00425 * 15 13 12 42 42 H 1.09001 * 109.47012 * 54.99466 * 16 13 12 43 43 H 1.08991 * 109.47245 * 174.99968 * 16 13 12 44 44 H 1.09006 * 109.47201 * 299.99567 * 19 17 16 45 45 H 1.08998 * 109.47320 * 59.99594 * 19 17 16 46 46 H 1.09003 * 109.47121 * 179.97438 * 19 17 16 47 47 H 0.97001 * 120.00030 * 335.00078 * 20 17 16 48 48 H 0.96998 * 120.00078 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.47364 * 97.44828 * 30 29 5 50 50 H 1.09000 * 109.46825 * 217.44105 * 30 29 5 51 51 H 1.09001 * 109.47594 * 337.44266 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5764 -1.1694 0.1074 6 6 4.3189 -0.1436 -0.4654 7 6 5.6972 -0.1410 -0.3621 8 6 6.3454 -1.1573 0.3100 9 6 5.6089 -2.1920 0.8888 10 6 6.3008 -3.2824 1.6089 11 8 5.6549 -4.1465 2.1691 12 7 7.6476 -3.3182 1.6444 13 6 8.3331 -4.3988 2.3575 14 1 7.7636 -5.3222 2.2521 15 6 8.4500 -4.0380 3.8398 16 6 9.7317 -4.5920 1.7679 17 6 9.6130 -5.0737 0.3206 18 1 8.9954 -4.3760 -0.2451 19 6 11.0058 -5.1475 -0.3082 20 7 8.9956 -6.4021 0.2972 21 6 8.3254 -6.8259 -0.8192 22 1 8.2516 -6.1809 -1.6823 23 6 7.7399 -8.0844 -0.8413 24 7 7.8293 -8.8704 0.2107 25 14 6.8263 -8.6629 -2.3645 26 1 7.7712 -9.3596 -3.2738 27 1 5.7425 -9.5970 -1.9667 28 1 6.2387 -7.4921 -3.0638 29 6 4.2179 -2.1948 0.7842 30 6 3.4152 -3.3088 1.4053 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0276 -0.0005 33 1 -0.3633 -0.5139 -0.8899 34 1 1.6988 -2.0056 -0.0733 35 1 3.8172 0.6546 -0.9922 36 1 6.2688 0.6586 -0.8096 37 1 7.4229 -1.1541 0.3847 38 1 8.1630 -2.6287 1.1972 39 1 7.4535 -3.9003 4.2598 40 1 8.9604 -4.8417 4.3702 41 1 9.0194 -3.1145 3.9451 42 1 10.2704 -3.6448 1.7925 43 1 10.2739 -5.3337 2.3543 44 1 11.4652 -4.1592 -0.2908 45 1 11.6233 -5.8453 0.2574 46 1 10.9212 -5.4911 -1.3392 47 1 9.0615 -6.9813 1.0725 48 1 7.4205 -9.7499 0.1952 49 1 3.4000 -4.1653 0.7312 50 1 3.8698 -3.5998 2.3522 51 1 2.3952 -2.9672 1.5817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135944093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:15 Heat of formation + Delta-G solvation = -62.557146 kcal Electronic energy + Delta-G solvation = -31182.663461 eV Core-core repulsion = 27081.104000 eV Total energy + Delta-G solvation = -4101.559461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90270 -40.92054 -39.27937 -38.19039 -36.20123 -35.91299 -34.04532 -33.42063 -32.65552 -31.43707 -30.41370 -29.57686 -27.90961 -27.56455 -25.66634 -25.09015 -23.24943 -22.25116 -21.97064 -21.15100 -21.08880 -19.42247 -19.08871 -18.14680 -17.32616 -17.22033 -16.83361 -16.70051 -16.46499 -16.02329 -15.75969 -15.52650 -15.43474 -15.17982 -14.77316 -14.56093 -14.46449 -14.31083 -14.10366 -13.59865 -13.50290 -13.42449 -13.28292 -13.23390 -13.12180 -13.05335 -12.94400 -12.84566 -12.76322 -12.65831 -12.31936 -12.20300 -12.19478 -11.80392 -11.54090 -11.47557 -11.40304 -11.00389 -10.90006 -10.51304 -10.07737 -9.72163 -9.18838 -8.92821 -7.90420 -5.15429 -0.15808 0.20754 1.42877 1.44566 1.48248 1.51965 1.89191 2.06117 2.31564 2.57120 2.83016 3.43873 3.67271 3.73476 3.81669 3.85679 3.97546 4.03331 4.06720 4.16377 4.33162 4.42088 4.45574 4.53938 4.56749 4.62503 4.66186 4.70316 4.74777 4.75603 4.80921 4.85307 4.95771 5.05351 5.06828 5.12052 5.16313 5.18965 5.24413 5.30902 5.36483 5.39645 5.43217 5.50242 5.55539 5.64967 5.72163 5.90940 6.32807 6.35988 6.64738 7.04288 7.35217 7.38582 8.18959 8.38840 9.33351 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.003128 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.997163 B = 8949.740995 C =10277.712665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.572 6.572 4 N -0.664 5.664 5 C 0.122 3.878 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.091 4.091 9 C -0.137 4.137 10 C 0.551 3.449 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.148 3.852 14 H 0.049 0.951 15 C -0.151 4.151 16 C -0.119 4.119 17 C 0.163 3.837 18 H 0.042 0.958 19 C -0.156 4.156 20 N -0.730 5.730 21 C -0.223 4.223 22 H 0.068 0.932 23 C -0.078 4.078 24 N -0.968 5.968 25 Si 0.960 3.040 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.275 1.275 29 C -0.064 4.064 30 C -0.120 4.120 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.425 0.575 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.409 0.591 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.247 0.753 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 21.591 1.761 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.451 6.451 4 N -0.311 5.311 5 C 0.027 3.973 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.140 4.140 10 C 0.340 3.660 11 O -0.449 6.449 12 N -0.351 5.351 13 C 0.044 3.956 14 H 0.068 0.932 15 C -0.209 4.209 16 C -0.157 4.157 17 C 0.055 3.945 18 H 0.060 0.940 19 C -0.216 4.216 20 N -0.371 5.371 21 C -0.355 4.355 22 H 0.086 0.914 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.200 1.200 29 C -0.068 4.068 30 C -0.176 4.176 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.264 0.736 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.172 0.828 38 H 0.247 0.753 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.202 0.798 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.101 0.899 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.740 21.743 2.001 23.166 hybrid contribution -0.505 -1.425 -0.761 1.693 sum -8.246 20.318 1.240 21.963 Atomic orbital electron populations 1.21971 0.86732 1.06798 1.06820 1.21896 0.92672 0.82144 0.73588 1.90687 1.71681 1.32714 1.50014 1.43640 1.04278 1.11020 1.72144 1.17554 0.84082 0.96619 0.98997 1.21625 0.94636 0.98217 0.98143 1.21304 0.93657 0.99106 0.98978 1.21547 1.00981 0.92542 0.95909 1.19682 0.93544 0.97184 1.03626 1.18548 0.82869 0.84852 0.79740 1.90690 1.65815 1.40561 1.47882 1.45781 1.05453 1.28950 1.54876 1.20845 0.93464 0.89651 0.91684 0.93229 1.22083 1.01408 1.02914 0.94511 1.22088 0.94793 1.03136 0.95665 1.20519 0.92634 0.86346 0.94951 0.93982 1.22310 0.98156 1.01269 0.99886 1.42587 1.63775 1.15115 1.15589 1.19476 1.24252 0.97875 0.93941 0.91434 1.25409 1.03610 0.97866 1.00083 1.69800 1.51675 1.09948 1.30581 0.85321 0.78063 0.77786 0.79782 1.21358 1.22604 1.19982 1.19893 0.93189 0.97055 0.96639 1.20979 0.99011 0.95206 1.02395 0.86907 0.88401 0.86583 0.73600 0.84178 0.82059 0.82797 0.75324 0.94366 0.91130 0.90048 0.87515 0.90472 0.90454 0.93923 0.95229 0.79825 0.94421 0.92081 0.89880 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.32 71.24 0.74 -0.51 16 2 C 0.51 9.11 7.79 87.66 0.68 9.79 16 3 O -0.57 -15.06 14.43 -3.04 -0.04 -15.11 16 4 N -0.66 -12.12 4.75 -303.61 -1.44 -13.57 16 5 C 0.12 3.01 6.30 38.11 0.24 3.25 16 6 C -0.11 -2.52 8.71 22.44 0.20 -2.33 16 7 C -0.11 -2.27 10.02 22.21 0.22 -2.04 16 8 C -0.09 -1.99 9.53 22.54 0.21 -1.77 16 9 C -0.14 -3.97 5.87 -20.10 -0.12 -4.09 16 10 C 0.55 19.00 7.71 86.79 0.67 19.67 16 11 O -0.57 -24.25 12.89 -3.88 -0.05 -24.30 16 12 N -0.70 -20.14 4.40 -445.38 -1.96 -22.10 16 13 C 0.15 4.70 2.52 44.99 0.11 4.82 16 14 H 0.05 2.19 7.05 -2.39 -0.02 2.17 16 15 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 16 C -0.12 -3.31 4.29 30.60 0.13 -3.18 16 17 C 0.16 5.93 2.84 44.99 0.13 6.06 16 18 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16 19 C -0.16 -5.06 9.49 71.98 0.68 -4.38 16 20 N -0.73 -36.15 4.49 -322.94 -1.45 -37.60 16 21 C -0.22 -12.53 9.93 84.03 0.83 -11.70 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 24 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 25 Si 0.96 47.93 29.55 68.60 2.03 49.96 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 28 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 29 C -0.06 -1.83 5.93 -19.48 -0.12 -1.94 16 30 C -0.12 -3.39 8.48 71.24 0.60 -2.78 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.42 5.45 7.65 -92.70 -0.71 4.74 16 35 H 0.14 3.41 6.11 -2.91 -0.02 3.39 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.15 2.38 6.41 -2.91 -0.02 2.36 16 38 H 0.41 8.75 6.65 -92.70 -0.62 8.13 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.37 20.02 7.80 -92.71 -0.72 19.30 16 48 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 49 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.08 2.83 5.62 -2.39 -0.01 2.82 16 51 H 0.08 1.65 6.78 -2.39 -0.02 1.63 16 Total: -1.00 -81.92 413.12 2.66 -79.27 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -1.08 Total: 42.71 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.37 Total: 1.45 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -4.57 Total: -133.98 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.09 Total: -39.41 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -81.92 2.66 -79.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.711 kcal (2) G-P(sol) polarization free energy of solvation -81.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds