Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38361 * 119.85056 * 2 1 4 4 C 1.37961 * 120.14136 * 179.70128 * 3 2 1 5 5 C 1.39578 * 119.85257 * 0.27762 * 4 3 2 6 6 C 1.47849 * 120.14199 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99735 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99519 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47346 * 33.56042 * 9 8 6 11 11 C 1.52998 * 109.47213 * 273.55489 * 9 8 6 12 12 C 1.53006 * 109.47046 * 153.55834 * 9 8 6 13 13 C 1.53003 * 109.47024 * 294.54793 * 12 9 8 14 14 H 1.09008 * 109.46867 * 54.62131 * 13 12 9 15 15 C 1.52999 * 109.47205 * 294.62480 * 13 12 9 16 16 N 1.46896 * 109.47028 * 174.62153 * 13 12 9 17 17 C 1.46902 * 110.99878 * 203.25602 * 16 13 12 18 18 C 1.50698 * 109.47087 * 180.02562 * 17 16 13 19 19 O 1.21301 * 120.00119 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00315 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00430 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00072 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00306 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00267 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99663 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46841 * 90.00566 * 25 23 21 27 27 H 1.48504 * 109.47196 * 210.00126 * 25 23 21 28 28 H 1.48497 * 109.47629 * 330.00388 * 25 23 21 29 29 C 1.39573 * 119.71262 * 359.97438 * 5 4 3 30 30 C 1.37961 * 119.85203 * 359.97438 * 29 5 4 31 31 H 1.08998 * 109.46943 * 90.00217 * 1 2 3 32 32 H 1.09006 * 109.46652 * 210.00192 * 1 2 3 33 33 H 1.08999 * 109.46847 * 330.00247 * 1 2 3 34 34 H 1.07998 * 119.92941 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.06966 * 180.29722 * 4 3 2 36 36 H 0.97000 * 120.00142 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47416 * 300.00510 * 11 9 8 38 38 H 1.09000 * 109.47148 * 60.00337 * 11 9 8 39 39 H 1.09004 * 109.46872 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.46933 * 54.54368 * 12 9 8 41 41 H 1.08995 * 109.47348 * 174.55007 * 12 9 8 42 42 H 1.08999 * 109.47078 * 59.99473 * 15 13 12 43 43 H 1.08995 * 109.47525 * 179.97438 * 15 13 12 44 44 H 1.09003 * 109.47045 * 300.00343 * 15 13 12 45 45 H 1.00893 * 111.00339 * 327.21237 * 16 13 12 46 46 H 1.08997 * 109.47230 * 300.00348 * 17 16 13 47 47 H 1.09000 * 109.46983 * 60.00220 * 17 16 13 48 48 H 0.97000 * 119.99565 * 359.97438 * 20 18 17 49 49 H 0.96999 * 119.99985 * 179.97438 * 24 23 21 50 50 H 1.08002 * 120.07352 * 179.97438 * 29 5 4 51 51 H 1.07998 * 119.92487 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2071 0.0062 5 6 4.2762 0.0000 0.0067 6 6 5.7547 0.0001 0.0127 7 8 6.3624 1.0528 0.0169 8 7 6.4286 -1.1671 0.0126 9 6 7.8936 -1.1670 0.0181 10 1 8.2548 -0.3119 0.5894 11 6 8.4089 -1.0743 -1.4195 12 6 8.4013 -2.4600 0.6594 13 6 8.0007 -2.4885 2.1358 14 1 6.9233 -2.3479 2.2227 15 6 8.7234 -1.3652 2.8821 16 7 8.3743 -3.7837 2.7196 17 6 7.5606 -4.0806 3.9061 18 6 7.9718 -5.4135 4.4765 19 8 8.8555 -6.0534 3.9465 20 7 7.3570 -5.8950 5.5750 21 6 7.7308 -7.1078 6.0936 22 1 8.5176 -7.6776 5.6217 23 6 7.0966 -7.6045 7.2258 24 7 7.4552 -8.7667 7.7232 25 14 5.7352 -6.6193 8.0416 26 1 4.4274 -6.9961 7.4476 27 1 5.7191 -6.9089 9.4980 28 1 5.9767 -5.1698 7.8278 29 6 3.5754 -1.2070 0.0013 30 6 2.1958 -1.1999 -0.0038 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6522 2.1333 -0.0004 35 1 4.1117 2.1445 0.0111 36 1 5.9436 -2.0071 0.0082 37 1 8.0478 -1.9294 -1.9909 38 1 8.0473 -0.1531 -1.8764 39 1 9.4990 -1.0737 -1.4154 40 1 7.9623 -3.3163 0.1473 41 1 9.4872 -2.5047 0.5767 42 1 8.4463 -0.4042 2.4488 43 1 8.4378 -1.3852 3.9337 44 1 9.8008 -1.5057 2.7951 45 1 8.3010 -4.5228 2.0367 46 1 7.7123 -3.3030 4.6546 47 1 6.5078 -4.1143 3.6255 48 1 6.6501 -5.3834 5.9986 49 1 7.0127 -9.1133 8.5138 50 1 4.1118 -2.1443 0.0012 51 1 1.6523 -2.1332 -0.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136007105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = -55.629838 kcal Electronic energy + Delta-G solvation = -29825.360638 eV Core-core repulsion = 25724.101568 eV Total energy + Delta-G solvation = -4101.259071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66460 -39.15910 -38.55255 -37.40682 -35.30705 -33.95207 -33.48977 -32.01520 -31.65802 -31.21069 -30.22097 -27.73957 -27.18364 -26.37694 -23.98236 -23.25109 -23.09603 -21.60828 -20.68671 -20.27512 -19.39164 -18.47827 -18.17542 -16.74796 -16.33983 -15.75814 -15.56404 -15.52362 -15.37244 -15.06914 -14.99995 -14.62999 -14.26067 -14.08789 -14.02038 -13.90989 -13.64096 -13.51695 -13.04999 -12.85888 -12.71008 -12.61523 -12.36851 -12.31913 -12.21588 -12.14318 -12.03825 -11.94221 -11.72230 -11.45104 -11.29594 -11.14437 -10.90320 -10.75681 -10.60269 -10.19043 -9.98352 -9.58084 -9.43749 -9.41177 -9.08657 -8.58097 -8.20765 -8.14500 -6.31932 -3.83325 0.44394 0.94941 2.53782 2.83873 3.02151 3.05511 3.14137 3.47885 3.73346 3.96114 4.09448 4.26289 4.31344 4.46131 4.56391 4.63398 4.67993 4.75861 4.82830 4.92155 4.97623 5.11751 5.12753 5.20210 5.21098 5.21774 5.28799 5.32432 5.44006 5.53517 5.57273 5.59560 5.62599 5.72517 5.74995 5.78443 5.85936 5.87242 5.92920 5.94958 5.99224 6.04630 6.09744 6.21965 6.35187 6.46444 7.12932 7.19023 7.57127 7.59594 7.92012 8.13797 8.59086 8.94226 9.41729 9.82105 10.81217 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008962 B = 0.002404 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.479841 B =11646.881240 C =14047.689619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.142 4.142 6 C 0.560 3.440 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.141 3.859 10 H 0.097 0.903 11 C -0.163 4.163 12 C -0.129 4.129 13 C 0.084 3.916 14 H 0.040 0.960 15 C -0.143 4.143 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.081 4.081 30 C -0.128 4.128 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.398 0.602 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.350 0.650 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.126 0.874 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 20.510 -18.314 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.145 4.145 6 C 0.348 3.652 7 O -0.416 6.416 8 N -0.372 5.372 9 C 0.037 3.963 10 H 0.115 0.885 11 C -0.221 4.221 12 C -0.167 4.167 13 C -0.026 4.026 14 H 0.058 0.942 15 C -0.201 4.201 16 N -0.297 5.297 17 C -0.084 4.084 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.100 4.100 30 C -0.146 4.146 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.170 0.830 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.144 0.856 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.190 20.889 -18.131 29.837 hybrid contribution -2.229 -0.104 0.512 2.289 sum -13.418 20.785 -17.619 30.373 Atomic orbital electron populations 1.20886 0.90784 1.03292 1.02712 1.20190 0.96476 0.93160 0.96310 1.21060 0.93864 0.97907 1.01992 1.21276 0.93847 0.97767 0.94574 1.19953 0.92871 0.94520 1.07157 1.18271 0.87076 0.83878 0.75973 1.90769 1.69859 1.31121 1.49838 1.46058 1.07502 1.08404 1.75186 1.21098 0.78815 0.99518 0.96917 0.88505 1.22172 1.01632 1.02289 0.96014 1.22085 1.03238 0.96550 0.94833 1.21517 0.97345 0.90918 0.92847 0.94179 1.21863 1.01449 0.96594 1.00191 1.60100 1.57028 1.03528 1.09044 1.21741 0.94779 0.97466 0.94418 1.19722 0.85724 0.87689 0.83286 1.90565 1.32373 1.60330 1.61359 1.42216 1.34678 1.20072 1.26097 1.19431 1.20076 0.94060 1.09772 0.86283 1.25038 0.98151 0.96198 0.96783 1.69619 1.41738 1.17756 1.23030 0.86678 0.82571 0.80011 0.80177 1.19671 1.20142 1.19475 1.21309 0.94600 0.96979 0.97090 1.21020 0.93876 0.97995 1.01726 0.90702 0.91099 0.91170 0.85323 0.84627 0.76622 0.92407 0.92139 0.91249 0.91242 0.88942 0.92639 0.92750 0.91686 0.83044 0.89567 0.93962 0.79720 0.91614 0.85632 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.00 36.01 0.36 -0.19 16 2 C -0.06 -0.42 5.89 -104.53 -0.62 -1.03 16 3 C -0.13 -0.95 9.68 -39.64 -0.38 -1.33 16 4 C -0.06 -0.50 9.60 -39.18 -0.38 -0.88 16 5 C -0.14 -1.34 5.87 -104.97 -0.62 -1.96 16 6 C 0.56 6.09 7.75 -12.33 -0.10 6.00 16 7 O -0.54 -7.57 15.99 5.31 0.08 -7.49 16 8 N -0.72 -6.23 4.40 -54.75 -0.24 -6.47 16 9 C 0.14 1.25 2.47 -67.93 -0.17 1.08 16 10 H 0.10 1.02 5.73 -51.93 -0.30 0.72 16 11 C -0.16 -1.32 9.50 37.16 0.35 -0.96 16 12 C -0.13 -1.16 4.28 -26.73 -0.11 -1.27 16 13 C 0.08 0.94 2.63 -67.71 -0.18 0.77 16 14 H 0.04 0.44 7.31 -51.92 -0.38 0.06 16 15 C -0.14 -1.66 9.16 37.16 0.34 -1.32 16 16 N -0.66 -9.90 5.93 -107.99 -0.64 -10.54 16 17 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 18 C 0.45 10.18 7.82 -10.99 -0.09 10.09 16 19 O -0.56 -15.09 15.78 5.54 0.09 -15.00 16 20 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 21 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 25 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 C -0.08 -0.62 9.54 -39.19 -0.37 -0.99 16 30 C -0.13 -0.90 9.68 -39.64 -0.38 -1.28 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.14 1.22 7.65 -52.48 -0.40 0.82 16 36 H 0.40 2.69 6.65 -40.82 -0.27 2.42 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.56 8.02 -51.93 -0.42 0.15 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.60 6.47 -51.93 -0.34 0.26 16 43 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.35 5.28 8.00 -39.30 -0.31 4.96 16 46 H 0.09 1.33 7.32 -51.93 -0.38 0.95 16 47 H 0.04 0.60 8.06 -51.93 -0.42 0.19 16 48 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 49 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.13 0.71 6.41 -52.49 -0.34 0.37 16 51 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 416.67 15.07 6.28 6.28 Total: -1.00 -34.84 416.67 -8.99 -43.83 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.95 Total: 14.11 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.61 Total: -0.25 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.16 Total: -56.11 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.49 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.84 -8.99 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136007105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.799 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds