Wall clock time and date at job start Wed Apr 1 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38361 * 119.85056 * 2 1 4 4 C 1.37961 * 120.14136 * 179.70128 * 3 2 1 5 5 C 1.39578 * 119.85257 * 0.27762 * 4 3 2 6 6 C 1.47849 * 120.14199 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99735 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99519 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47346 * 33.56042 * 9 8 6 11 11 C 1.52998 * 109.47213 * 273.55489 * 9 8 6 12 12 C 1.53006 * 109.47046 * 153.55834 * 9 8 6 13 13 C 1.53003 * 109.47024 * 294.54793 * 12 9 8 14 14 H 1.09008 * 109.46867 * 54.62131 * 13 12 9 15 15 C 1.52999 * 109.47205 * 294.62480 * 13 12 9 16 16 N 1.46896 * 109.47028 * 174.62153 * 13 12 9 17 17 C 1.46902 * 110.99878 * 203.25602 * 16 13 12 18 18 C 1.50698 * 109.47087 * 180.02562 * 17 16 13 19 19 O 1.21301 * 120.00119 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00315 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00430 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00072 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00306 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00267 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99663 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46841 * 90.00566 * 25 23 21 27 27 H 1.48504 * 109.47196 * 210.00126 * 25 23 21 28 28 H 1.48497 * 109.47629 * 330.00388 * 25 23 21 29 29 C 1.39573 * 119.71262 * 359.97438 * 5 4 3 30 30 C 1.37961 * 119.85203 * 359.97438 * 29 5 4 31 31 H 1.08998 * 109.46943 * 90.00217 * 1 2 3 32 32 H 1.09006 * 109.46652 * 210.00192 * 1 2 3 33 33 H 1.08999 * 109.46847 * 330.00247 * 1 2 3 34 34 H 1.07998 * 119.92941 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.06966 * 180.29722 * 4 3 2 36 36 H 0.97000 * 120.00142 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47416 * 300.00510 * 11 9 8 38 38 H 1.09000 * 109.47148 * 60.00337 * 11 9 8 39 39 H 1.09004 * 109.46872 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.46933 * 54.54368 * 12 9 8 41 41 H 1.08995 * 109.47348 * 174.55007 * 12 9 8 42 42 H 1.08999 * 109.47078 * 59.99473 * 15 13 12 43 43 H 1.08995 * 109.47525 * 179.97438 * 15 13 12 44 44 H 1.09003 * 109.47045 * 300.00343 * 15 13 12 45 45 H 1.00893 * 111.00339 * 327.21237 * 16 13 12 46 46 H 1.08997 * 109.47230 * 300.00348 * 17 16 13 47 47 H 1.09000 * 109.46983 * 60.00220 * 17 16 13 48 48 H 0.97000 * 119.99565 * 359.97438 * 20 18 17 49 49 H 0.96999 * 119.99985 * 179.97438 * 24 23 21 50 50 H 1.08002 * 120.07352 * 179.97438 * 29 5 4 51 51 H 1.07998 * 119.92487 * 180.02562 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2071 0.0062 5 6 4.2762 0.0000 0.0067 6 6 5.7547 0.0001 0.0127 7 8 6.3624 1.0528 0.0169 8 7 6.4286 -1.1671 0.0126 9 6 7.8936 -1.1670 0.0181 10 1 8.2548 -0.3119 0.5894 11 6 8.4089 -1.0743 -1.4195 12 6 8.4013 -2.4600 0.6594 13 6 8.0007 -2.4885 2.1358 14 1 6.9233 -2.3479 2.2227 15 6 8.7234 -1.3652 2.8821 16 7 8.3743 -3.7837 2.7196 17 6 7.5606 -4.0806 3.9061 18 6 7.9718 -5.4135 4.4765 19 8 8.8555 -6.0534 3.9465 20 7 7.3570 -5.8950 5.5750 21 6 7.7308 -7.1078 6.0936 22 1 8.5176 -7.6776 5.6217 23 6 7.0966 -7.6045 7.2258 24 7 7.4552 -8.7667 7.7232 25 14 5.7352 -6.6193 8.0416 26 1 4.4274 -6.9961 7.4476 27 1 5.7191 -6.9089 9.4980 28 1 5.9767 -5.1698 7.8278 29 6 3.5754 -1.2070 0.0013 30 6 2.1958 -1.1999 -0.0038 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6522 2.1333 -0.0004 35 1 4.1117 2.1445 0.0111 36 1 5.9436 -2.0071 0.0082 37 1 8.0478 -1.9294 -1.9909 38 1 8.0473 -0.1531 -1.8764 39 1 9.4990 -1.0737 -1.4154 40 1 7.9623 -3.3163 0.1473 41 1 9.4872 -2.5047 0.5767 42 1 8.4463 -0.4042 2.4488 43 1 8.4378 -1.3852 3.9337 44 1 9.8008 -1.5057 2.7951 45 1 8.3010 -4.5228 2.0367 46 1 7.7123 -3.3030 4.6546 47 1 6.5078 -4.1143 3.6255 48 1 6.6501 -5.3834 5.9986 49 1 7.0127 -9.1133 8.5138 50 1 4.1118 -2.1443 0.0012 51 1 1.6523 -2.1332 -0.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136007105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:51 Heat of formation + Delta-G solvation = -80.707599 kcal Electronic energy + Delta-G solvation = -29826.448092 eV Core-core repulsion = 25724.101568 eV Total energy + Delta-G solvation = -4102.346524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38803 -40.36649 -39.70147 -38.44864 -36.38951 -35.85717 -34.10828 -33.75234 -32.76789 -31.87927 -31.10934 -28.37275 -28.22741 -27.61853 -25.59866 -23.98553 -23.64181 -22.39394 -21.43191 -21.27644 -21.11701 -20.27102 -18.98206 -17.84921 -17.48999 -17.07641 -16.70333 -16.35624 -16.20671 -16.06898 -15.87261 -15.69068 -15.55116 -15.15062 -14.91091 -14.61647 -14.57564 -14.51189 -14.31633 -14.10518 -13.96422 -13.61600 -13.34372 -13.27338 -13.03580 -12.94200 -12.87437 -12.83672 -12.71051 -12.55035 -12.42213 -12.14571 -11.99091 -11.96111 -11.70141 -11.65616 -11.51229 -11.01648 -10.43767 -10.25053 -10.18826 -9.97752 -9.64722 -9.32503 -8.41335 -6.02154 -0.16414 0.39837 1.30436 1.34859 1.44235 1.83222 1.95183 2.12864 2.22708 2.68462 2.86311 3.15131 3.33556 3.65723 3.78804 3.82021 3.92727 3.98925 4.02460 4.11842 4.16479 4.34827 4.37421 4.38706 4.42509 4.43461 4.49735 4.55607 4.73458 4.76458 4.79786 4.84595 4.86258 4.92477 4.93342 5.03017 5.06869 5.17456 5.22440 5.28797 5.30875 5.38017 5.39363 5.52741 5.53513 5.59435 5.91802 5.94004 6.08319 6.44134 6.50160 6.59767 6.87981 7.17259 7.39592 7.95866 8.76277 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008962 B = 0.002404 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.479841 B =11646.881240 C =14047.689619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.073 4.073 5 C -0.162 4.162 6 C 0.558 3.442 7 O -0.580 6.580 8 N -0.708 5.708 9 C 0.146 3.854 10 H 0.080 0.920 11 C -0.158 4.158 12 C -0.119 4.119 13 C 0.088 3.912 14 H 0.052 0.948 15 C -0.142 4.142 16 N -0.680 5.680 17 C 0.063 3.937 18 C 0.450 3.550 19 O -0.612 6.612 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.234 1.234 29 C -0.081 4.081 30 C -0.134 4.134 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.410 0.590 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.348 0.652 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.145 0.855 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 22.051 -18.535 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.165 4.165 6 C 0.347 3.653 7 O -0.461 6.461 8 N -0.360 5.360 9 C 0.041 3.959 10 H 0.098 0.902 11 C -0.216 4.216 12 C -0.157 4.157 13 C -0.021 4.021 14 H 0.070 0.930 15 C -0.200 4.200 16 N -0.313 5.313 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.157 1.157 29 C -0.099 4.099 30 C -0.152 4.152 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.168 0.832 46 H 0.122 0.878 47 H 0.096 0.904 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.163 0.837 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.383 22.431 -18.374 32.367 hybrid contribution -1.165 -0.633 0.493 1.415 sum -15.548 21.798 -17.881 32.197 Atomic orbital electron populations 1.20942 0.89002 1.04092 1.03550 1.20543 0.97851 0.92902 0.94971 1.21283 0.93230 0.99150 1.01623 1.21347 0.94783 0.97461 0.95605 1.19950 0.92050 0.95509 1.09035 1.18560 0.87780 0.83702 0.75255 1.90742 1.70743 1.32586 1.52014 1.45971 1.07418 1.08412 1.74202 1.21005 0.78935 0.98742 0.97203 0.90220 1.22123 1.02213 1.01950 0.95347 1.21994 1.03322 0.96996 0.93417 1.21547 0.97924 0.88812 0.93831 0.93006 1.21849 1.01046 0.97135 0.99926 1.60076 1.57524 1.04821 1.08921 1.21645 0.96668 0.93412 0.95252 1.20954 0.84081 0.89197 0.82018 1.90545 1.34339 1.62304 1.62487 1.42048 1.35580 1.18934 1.26769 1.19005 1.19834 0.95986 1.10892 0.92600 1.26106 1.01125 0.97332 0.96795 1.69801 1.43692 1.20129 1.23841 0.85381 0.78210 0.79763 0.78273 1.17863 1.20095 1.15732 1.21527 0.95101 0.96949 0.96347 1.21348 0.93775 0.98980 1.01111 0.89725 0.90289 0.90434 0.83621 0.85770 0.75268 0.91204 0.93727 0.90363 0.89731 0.89018 0.91990 0.93360 0.92436 0.83237 0.87798 0.90440 0.77548 0.91141 0.83708 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.00 71.24 0.71 -0.02 16 2 C -0.06 -0.71 5.89 -19.81 -0.12 -0.83 16 3 C -0.14 -1.79 9.68 22.23 0.22 -1.58 16 4 C -0.07 -1.30 9.60 22.53 0.22 -1.08 16 5 C -0.16 -2.93 5.87 -20.09 -0.12 -3.05 16 6 C 0.56 11.86 7.75 86.79 0.67 12.53 16 7 O -0.58 -16.68 15.99 -3.90 -0.06 -16.75 16 8 N -0.71 -11.10 4.40 -445.39 -1.96 -13.06 16 9 C 0.15 2.39 2.47 44.99 0.11 2.50 16 10 H 0.08 1.63 5.73 -2.39 -0.01 1.62 16 11 C -0.16 -2.36 9.50 71.98 0.68 -1.68 16 12 C -0.12 -1.88 4.28 30.60 0.13 -1.75 16 13 C 0.09 1.77 2.63 44.92 0.12 1.89 16 14 H 0.05 0.96 7.31 -2.38 -0.02 0.94 16 15 C -0.14 -3.05 9.16 71.98 0.66 -2.40 16 16 N -0.68 -18.86 5.93 -495.57 -2.94 -21.80 16 17 C 0.06 1.88 5.97 85.56 0.51 2.39 16 18 C 0.45 20.04 7.82 87.66 0.69 20.73 16 19 O -0.61 -33.54 15.78 -3.09 -0.05 -33.59 16 20 N -0.59 -27.71 5.09 -306.98 -1.56 -29.27 16 21 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.93 -56.12 13.96 21.66 0.30 -55.82 16 25 Si 0.96 38.51 27.74 68.60 1.90 40.41 16 26 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 29 C -0.08 -1.05 9.54 22.53 0.21 -0.83 16 30 C -0.13 -1.51 9.68 22.23 0.22 -1.30 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.38 8.08 -2.38 -0.02 0.36 16 33 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 34 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.12 2.39 7.65 -2.91 -0.02 2.36 16 36 H 0.41 4.44 6.65 -92.71 -0.62 3.83 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 40 H 0.08 1.12 8.02 -2.39 -0.02 1.10 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.26 6.47 -2.39 -0.02 1.24 16 43 H 0.05 1.09 7.35 -2.39 -0.02 1.07 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 45 H 0.35 9.90 8.00 -89.70 -0.72 9.18 16 46 H 0.10 2.83 7.32 -2.39 -0.02 2.81 16 47 H 0.08 1.85 8.06 -2.39 -0.02 1.83 16 48 H 0.39 15.10 5.76 -92.71 -0.53 14.56 16 49 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.15 1.18 6.41 -2.91 -0.02 1.16 16 51 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -81.35 416.67 0.91 -80.44 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -0.96 Total: 42.55 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.23 Total: 6.89 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.16 Total: -119.95 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.11 Total: -50.34 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -81.35 0.91 -80.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136007105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.267 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds