Wall clock time and date at job start Wed Apr 1 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38352 * 119.85312 * 2 1 4 4 C 1.37954 * 120.14573 * 179.97438 * 3 2 1 5 5 C 1.39577 * 119.85264 * 359.97438 * 4 3 2 6 6 C 1.47851 * 120.14557 * 179.97438 * 5 4 3 7 7 O 1.21554 * 119.99805 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.53006 * 109.47249 * 154.99998 * 9 8 6 13 13 C 1.52999 * 109.47054 * 295.00397 * 12 9 8 14 14 H 1.09008 * 109.47118 * 54.99823 * 13 12 9 15 15 C 1.53005 * 109.47098 * 174.99474 * 13 12 9 16 16 N 1.46899 * 109.47178 * 294.99627 * 13 12 9 17 17 C 1.46901 * 110.99879 * 155.00177 * 16 13 12 18 18 C 1.50706 * 109.46968 * 180.02562 * 17 16 13 19 19 O 1.21283 * 119.99846 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99511 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99506 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00047 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99875 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99996 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99867 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47371 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47028 * 120.00516 * 25 23 21 28 28 H 1.48501 * 109.47098 * 240.00491 * 25 23 21 29 29 C 1.39573 * 119.71258 * 0.25051 * 5 4 3 30 30 C 1.37961 * 119.84666 * 359.51725 * 29 5 4 31 31 H 1.09003 * 109.47402 * 90.00280 * 1 2 3 32 32 H 1.09002 * 109.47582 * 210.00068 * 1 2 3 33 33 H 1.09000 * 109.47537 * 330.00372 * 1 2 3 34 34 H 1.08007 * 119.92848 * 359.97234 * 3 2 1 35 35 H 1.08004 * 120.07759 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00396 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 38 38 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 40 40 H 1.08995 * 109.46750 * 55.00063 * 12 9 8 41 41 H 1.09001 * 109.47326 * 175.00442 * 12 9 8 42 42 H 1.08998 * 109.46967 * 179.97438 * 15 13 12 43 43 H 1.08991 * 109.47506 * 300.00260 * 15 13 12 44 44 H 1.09004 * 109.46369 * 60.00170 * 15 13 12 45 45 H 1.00901 * 111.00035 * 31.05077 * 16 13 12 46 46 H 1.09004 * 109.47213 * 300.00298 * 17 16 13 47 47 H 1.08999 * 109.47179 * 60.00014 * 17 16 13 48 48 H 0.96993 * 120.00316 * 359.97438 * 20 18 17 49 49 H 0.97000 * 119.99960 * 179.97438 * 24 23 21 50 50 H 1.07992 * 120.07609 * 179.72968 * 29 5 4 51 51 H 1.08004 * 119.92503 * 180.22514 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5752 1.2070 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7546 0.0000 0.0016 7 8 6.3624 1.0527 0.0002 8 7 6.4285 -1.1672 0.0032 9 6 7.8935 -1.1672 0.0026 10 1 8.2570 -0.3245 0.5907 11 6 8.4030 -1.0436 -1.4347 12 6 8.4038 -2.4736 0.6141 13 6 7.9995 -2.5388 2.0883 14 1 6.9205 -2.4105 2.1752 15 6 8.3997 -3.8973 2.6673 16 7 8.6811 -1.4700 2.8307 17 6 7.9289 -1.1060 4.0389 18 6 8.6568 -0.0090 4.7723 19 8 9.6992 0.4270 4.3315 20 7 8.1488 0.4883 5.9173 21 6 8.8112 1.4859 6.5848 22 1 9.7400 1.8736 6.1928 23 6 8.2873 1.9990 7.7650 24 7 7.1570 1.5276 8.2417 25 14 9.1902 3.3578 8.6748 26 1 10.4296 3.7093 7.9361 27 1 8.3160 4.5542 8.7718 28 1 9.5427 2.8903 10.0395 29 6 3.5753 -1.2070 -0.0031 30 6 2.1957 -1.2000 0.0012 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6521 2.1332 -0.0005 35 1 4.1117 2.1443 0.0001 36 1 5.9435 -2.0072 0.0047 37 1 8.0395 -0.1129 -1.8703 38 1 8.0394 -1.8864 -2.0227 39 1 9.4931 -1.0432 -1.4350 40 1 7.9689 -3.3187 0.0805 41 1 9.4900 -2.5128 0.5332 42 1 8.1121 -3.9435 3.7177 43 1 7.8941 -4.6903 2.1165 44 1 9.4787 -4.0255 2.5804 45 1 8.8351 -0.6637 2.2440 46 1 6.9354 -0.7571 3.7571 47 1 7.8376 -1.9780 4.6865 48 1 7.3145 0.1403 6.2692 49 1 6.7914 1.8855 9.0658 50 1 4.1117 -2.1443 -0.0068 51 1 1.6521 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136007106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:56 Heat of formation + Delta-G solvation = -61.054142 kcal Electronic energy + Delta-G solvation = -30466.609528 eV Core-core repulsion = 26365.115241 eV Total energy + Delta-G solvation = -4101.494286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51867 -39.05379 -38.30313 -37.24623 -35.03116 -33.82926 -33.33353 -31.78143 -31.23210 -30.99826 -30.36124 -27.60870 -27.06318 -26.12133 -23.90958 -23.21616 -22.96289 -21.53055 -20.57054 -20.15117 -19.20784 -18.19820 -17.81890 -16.61417 -16.25780 -15.63129 -15.50551 -15.35797 -15.16724 -14.93083 -14.86569 -14.39426 -14.07357 -13.90596 -13.87487 -13.80357 -13.64923 -13.46860 -12.97519 -12.65220 -12.60223 -12.43798 -12.22884 -12.18543 -12.07184 -11.90433 -11.81387 -11.71995 -11.47888 -11.31804 -11.19837 -11.04403 -10.91106 -10.55525 -10.29517 -10.16431 -10.00646 -9.45844 -9.29612 -9.27157 -8.95438 -8.37016 -8.00108 -7.89201 -6.35776 -3.76102 0.59223 1.08676 2.70561 2.97656 3.20843 3.30757 3.38764 3.63207 3.98087 4.15196 4.34985 4.39513 4.43651 4.50830 4.60941 4.71543 4.75783 4.95270 5.00240 5.05229 5.15945 5.21603 5.27286 5.31123 5.32927 5.40596 5.41411 5.42315 5.53988 5.63336 5.67077 5.72065 5.75392 5.79944 5.86479 5.94588 5.98889 6.03920 6.06806 6.09747 6.12916 6.22644 6.30026 6.36720 6.40414 6.60342 7.31107 7.34402 7.61327 7.73563 8.10670 8.13068 8.67971 9.24327 9.61038 10.12830 10.82267 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.002910 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.221204 B = 9618.122412 C =11787.201791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.054 4.054 5 C -0.139 4.139 6 C 0.557 3.443 7 O -0.528 6.528 8 N -0.721 5.721 9 C 0.134 3.866 10 H 0.094 0.906 11 C -0.160 4.160 12 C -0.129 4.129 13 C 0.081 3.919 14 H 0.041 0.959 15 C -0.140 4.140 16 N -0.663 5.663 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.083 4.083 30 C -0.130 4.130 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.397 0.603 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.349 0.651 46 H 0.040 0.960 47 H 0.084 0.916 48 H 0.391 0.609 49 H 0.270 0.730 50 H 0.125 0.875 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -11.213 -19.902 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.073 4.073 5 C -0.142 4.142 6 C 0.344 3.656 7 O -0.405 6.405 8 N -0.374 5.374 9 C 0.030 3.970 10 H 0.112 0.888 11 C -0.219 4.219 12 C -0.167 4.167 13 C -0.029 4.029 14 H 0.059 0.941 15 C -0.198 4.198 16 N -0.298 5.298 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.101 4.101 30 C -0.148 4.148 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.170 0.830 46 H 0.058 0.942 47 H 0.103 0.897 48 H 0.225 0.775 49 H 0.080 0.920 50 H 0.142 0.858 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.642 -10.521 -19.695 25.182 hybrid contribution -1.186 0.472 0.492 1.368 sum -12.828 -10.049 -19.203 25.185 Atomic orbital electron populations 1.20870 0.90847 1.03265 1.02577 1.20163 0.96412 0.93181 0.96559 1.21069 0.93861 0.97955 1.01750 1.21325 0.93903 0.97947 0.94128 1.19961 0.92868 0.94539 1.06827 1.18307 0.87129 0.83957 0.76223 1.90818 1.69735 1.31046 1.48921 1.46005 1.07310 1.08296 1.75755 1.21124 0.78977 0.99638 0.97287 0.88807 1.22143 1.01674 1.02213 0.95837 1.22110 1.03124 0.96344 0.95106 1.21542 0.96108 0.93330 0.91921 0.94117 1.21797 1.02223 0.94882 1.00862 1.60230 1.48341 1.13225 1.07983 1.21692 0.94749 0.98476 0.93151 1.19813 0.87618 0.86172 0.83579 1.90517 1.24732 1.63010 1.68291 1.41862 1.23481 1.34127 1.20728 1.19757 1.06682 1.12222 1.03919 0.87899 1.25252 0.96354 0.99142 0.97285 1.69626 1.19260 1.43263 1.22324 0.85807 0.79412 0.80163 0.79017 1.19213 1.20790 1.20780 1.21257 0.94532 0.96847 0.97499 1.20966 0.93816 0.97842 1.02131 0.90813 0.91209 0.91139 0.85277 0.84500 0.76809 0.92053 0.92581 0.91221 0.90767 0.88984 0.92581 0.93027 0.91834 0.82959 0.94226 0.89744 0.77544 0.92015 0.85756 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.00 36.00 0.36 -0.31 16 2 C -0.06 -0.52 5.89 -104.54 -0.62 -1.14 16 3 C -0.13 -1.21 9.68 -39.64 -0.38 -1.59 16 4 C -0.05 -0.63 9.60 -39.19 -0.38 -1.00 16 5 C -0.14 -1.61 5.87 -104.97 -0.62 -2.23 16 6 C 0.56 7.54 7.74 -12.33 -0.10 7.45 16 7 O -0.53 -9.39 16.01 5.32 0.09 -9.30 16 8 N -0.72 -7.55 4.40 -54.75 -0.24 -7.79 16 9 C 0.13 1.49 2.48 -67.93 -0.17 1.32 16 10 H 0.09 1.38 5.72 -51.93 -0.30 1.09 16 11 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 12 C -0.13 -1.23 4.35 -26.73 -0.12 -1.35 16 13 C 0.08 0.98 2.59 -67.71 -0.18 0.80 16 14 H 0.04 0.49 7.28 -51.92 -0.38 0.11 16 15 C -0.14 -1.54 9.42 37.16 0.35 -1.19 16 16 N -0.66 -11.17 5.93 -107.98 -0.64 -11.81 16 17 C 0.05 0.99 5.97 -4.97 -0.03 0.96 16 18 C 0.44 11.08 7.82 -10.98 -0.09 10.99 16 19 O -0.58 -16.59 15.78 5.55 0.09 -16.50 16 20 N -0.57 -15.04 5.29 -10.96 -0.06 -15.10 16 21 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 22 H 0.10 3.14 7.16 -52.48 -0.38 2.76 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.32 13.05 55.50 0.72 -24.60 16 25 Si 0.93 21.76 29.55 -169.99 -5.02 16.74 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C -0.08 -0.73 9.54 -39.19 -0.37 -1.10 16 30 C -0.13 -1.03 9.68 -39.64 -0.38 -1.41 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.14 1.67 7.65 -52.48 -0.40 1.27 16 36 H 0.40 3.00 6.64 -40.82 -0.27 2.73 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.35 6.35 6.11 -39.29 -0.24 6.11 16 46 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 47 H 0.08 1.47 7.43 -51.93 -0.39 1.09 16 48 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 49 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.12 0.76 6.41 -52.49 -0.34 0.42 16 51 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 420.14 15.07 6.33 6.33 Total: -1.00 -35.33 420.14 -9.35 -44.68 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -8.02 Total: 16.63 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.60 Total: 0.73 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.22 Total: -59.30 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.17 Total: -25.81 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.33 -9.35 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136007106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.374 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds