Wall clock time and date at job start Wed Apr 1 2020 05:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38386 * 119.93120 * 2 1 4 4 C 1.38338 * 120.29355 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.30372 * 4 3 2 6 6 C 1.39557 * 119.85101 * 359.44757 * 5 4 3 7 7 C 1.47847 * 120.13971 * 180.29942 * 6 5 4 8 8 O 1.21558 * 119.99627 * 180.22582 * 7 6 5 9 9 N 1.34770 * 120.00404 * 0.23034 * 7 6 5 10 10 C 1.46504 * 120.00394 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47462 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99936 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00406 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00541 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.46483 * 324.99686 * 14 13 11 16 16 C 1.52999 * 109.47236 * 84.99639 * 14 13 11 17 17 C 1.52997 * 109.47140 * 205.00008 * 14 13 11 18 18 C 1.52997 * 109.47538 * 64.99492 * 17 14 13 19 19 H 1.08998 * 109.47099 * 305.00307 * 18 17 14 20 20 C 1.52992 * 109.47472 * 185.00126 * 18 17 14 21 21 N 1.46505 * 109.46776 * 64.99974 * 18 17 14 22 22 C 1.36944 * 119.99623 * 205.00063 * 21 18 17 23 23 H 1.08003 * 120.00241 * 0.02562 * 22 21 18 24 24 C 1.38814 * 119.99355 * 179.97438 * 22 21 18 25 25 N 1.31613 * 120.00408 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99422 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47347 * 90.00028 * 26 24 22 28 28 H 1.48502 * 109.47089 * 210.00230 * 26 24 22 29 29 H 1.48505 * 109.47267 * 330.00077 * 26 24 22 30 30 C 1.37934 * 119.92680 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47620 * 89.99570 * 1 2 3 32 32 H 1.08996 * 109.47315 * 210.00405 * 1 2 3 33 33 H 1.09007 * 109.46604 * 329.99531 * 1 2 3 34 34 H 1.08001 * 119.85110 * 0.02755 * 3 2 1 35 35 H 1.08002 * 119.92371 * 180.02562 * 4 3 2 36 36 H 1.08004 * 120.06871 * 179.70410 * 5 4 3 37 37 H 0.97006 * 120.00067 * 359.97438 * 9 7 6 38 38 H 1.09008 * 109.46651 * 299.99648 * 10 9 7 39 39 H 1.08996 * 109.46977 * 59.99497 * 10 9 7 40 40 H 0.97003 * 119.99609 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.46866 * 60.00171 * 16 14 13 42 42 H 1.09000 * 109.46901 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.47026 * 300.00199 * 16 14 13 44 44 H 1.08997 * 109.46924 * 184.99906 * 17 14 13 45 45 H 1.09001 * 109.47022 * 304.99126 * 17 14 13 46 46 H 1.08999 * 109.47379 * 180.02562 * 20 18 17 47 47 H 1.09003 * 109.46723 * 299.99960 * 20 18 17 48 48 H 1.08992 * 109.47226 * 59.99946 * 20 18 17 49 49 H 0.96997 * 120.00651 * 25.00117 * 21 18 17 50 50 H 0.96998 * 119.99894 * 179.97438 * 25 24 22 51 51 H 1.08004 * 120.07180 * 359.95115 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0193 -0.0074 6 6 3.5910 -1.1937 -0.0021 7 6 4.3352 -2.4712 -0.0028 8 8 3.7313 -3.5262 -0.0023 9 7 5.6829 -2.4662 -0.0037 10 6 6.4202 -3.7321 -0.0049 11 6 7.9008 -3.4512 -0.0064 12 8 8.3007 -2.3062 -0.0070 13 7 8.7805 -4.4722 -0.0072 14 6 10.2198 -4.1991 -0.0081 15 1 10.4193 -3.3042 -0.5977 16 6 10.6984 -3.9806 1.4286 17 6 10.9641 -5.3884 -0.6184 18 6 10.5780 -5.5300 -2.0921 19 1 9.4940 -5.6052 -2.1780 20 6 11.2241 -6.7908 -2.6697 21 7 11.0466 -4.3572 -2.8345 22 6 10.4214 -3.9870 -3.9953 23 1 9.5827 -4.5595 -4.3633 24 6 10.8651 -2.8754 -4.6985 25 7 11.8868 -2.1775 -4.2498 26 14 10.0119 -2.3701 -6.2816 27 1 8.9102 -1.4243 -5.9701 28 1 10.9907 -1.7104 -7.1826 29 1 9.4564 -3.5739 -6.9506 30 6 2.1951 -1.1954 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 1.6539 2.1325 0.0005 35 1 4.1136 2.1475 -0.0001 36 1 5.3612 0.0275 -0.0126 37 1 6.1647 -1.6243 -0.0044 38 1 6.1597 -4.3051 0.8851 39 1 6.1584 -4.3042 -0.8949 40 1 8.4606 -5.3880 -0.0063 41 1 10.4988 -4.8755 2.0180 42 1 11.7692 -3.7770 1.4278 43 1 10.1681 -3.1333 1.8633 44 1 12.0387 -5.2242 -0.5385 45 1 10.6950 -6.2989 -0.0831 46 1 10.9494 -6.8915 -3.7197 47 1 12.3081 -6.7155 -2.5837 48 1 10.8755 -7.6634 -2.1173 49 1 11.7995 -3.8428 -2.5039 50 1 12.1969 -1.4010 -4.7414 51 1 1.6551 -2.1307 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136091175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:36 Heat of formation + Delta-G solvation = -50.482462 kcal Electronic energy + Delta-G solvation = -30144.622056 eV Core-core repulsion = 26043.586192 eV Total energy + Delta-G solvation = -4101.035864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52748 -39.65771 -38.52015 -36.94367 -34.76562 -34.37337 -33.13200 -32.21834 -31.46456 -30.88614 -28.62537 -27.98989 -26.95616 -26.33047 -23.89763 -23.59165 -22.08380 -21.44473 -20.43164 -20.32482 -19.74709 -18.28255 -17.23985 -16.74804 -16.50444 -16.04269 -15.89496 -15.63252 -14.98755 -14.85108 -14.76846 -14.46215 -14.00170 -13.94763 -13.91300 -13.69324 -13.45853 -13.19986 -12.97599 -12.79586 -12.55695 -12.55124 -12.20112 -12.11330 -12.01335 -11.87286 -11.75259 -11.62739 -11.33381 -11.06856 -10.82782 -10.63181 -10.45901 -10.23366 -10.14747 -9.91139 -9.75032 -9.61887 -9.37370 -9.15083 -8.98573 -8.88295 -8.81138 -6.92441 -5.73341 -3.01306 0.61777 1.08697 2.66216 2.75464 2.79861 3.45528 3.49220 3.50843 3.51775 3.63074 4.45696 4.47801 4.59524 4.62126 4.74319 4.85677 4.98252 5.05802 5.10084 5.20530 5.28619 5.30026 5.35837 5.39097 5.46132 5.46455 5.60650 5.65660 5.66591 5.78420 5.86181 5.90474 5.99898 6.05767 6.10979 6.11308 6.16000 6.23491 6.27387 6.32032 6.41937 6.54826 6.62222 6.65838 6.75876 6.89437 7.06579 7.36605 7.63527 7.72327 8.04613 8.34740 8.45108 9.56520 10.13654 10.47791 11.49316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.002608 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.674611 B =10734.805827 C =12344.457511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.096 4.096 4 C -0.122 4.122 5 C -0.089 4.089 6 C -0.129 4.129 7 C 0.561 3.439 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.100 3.900 11 C 0.510 3.490 12 O -0.532 6.532 13 N -0.710 5.710 14 C 0.144 3.856 15 H 0.107 0.893 16 C -0.161 4.161 17 C -0.131 4.131 18 C 0.171 3.829 19 H 0.046 0.954 20 C -0.165 4.165 21 N -0.720 5.720 22 C -0.234 4.234 23 H 0.067 0.933 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C -0.061 4.061 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.034 0.966 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.232 0.564 14.220 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.132 4.132 7 C 0.349 3.651 8 O -0.420 6.420 9 N -0.365 5.365 10 C -0.028 4.028 11 C 0.295 3.705 12 O -0.409 6.409 13 N -0.360 5.360 14 C 0.040 3.960 15 H 0.125 0.875 16 C -0.219 4.219 17 C -0.170 4.170 18 C 0.061 3.939 19 H 0.064 0.936 20 C -0.226 4.226 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.085 0.915 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 C -0.080 4.080 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.419 0.656 14.063 21.628 hybrid contribution 0.111 0.391 -0.957 1.040 sum -16.308 1.047 13.106 20.948 Atomic orbital electron populations 1.20797 0.90653 1.02981 1.02615 1.19908 0.96475 0.92795 1.00666 1.21270 0.94328 0.97689 0.98139 1.21129 0.94238 0.98182 1.00484 1.21433 1.00280 0.91830 0.97179 1.19863 0.94318 0.92690 1.06306 1.18230 0.81627 0.89035 0.76205 1.90764 1.68558 1.32442 1.50222 1.45606 1.06019 1.10007 1.74894 1.21095 0.89296 0.87555 1.04815 1.20297 0.87954 0.85859 0.76408 1.90717 1.79780 1.21006 1.49366 1.45860 1.06947 1.08710 1.74529 1.21078 0.78050 1.00940 0.95944 0.87511 1.22182 1.01613 1.01353 0.96769 1.22172 1.00750 0.96593 0.97449 1.20230 0.96791 0.88140 0.88765 0.93635 1.22454 1.00862 0.98020 1.01233 1.42396 1.38384 1.29361 1.26054 1.19151 1.10460 1.07989 0.98972 0.91533 1.24690 0.98548 0.98333 0.99200 1.69642 1.27716 1.20246 1.40364 0.86269 0.78575 0.78295 0.83533 1.21803 1.21825 1.20880 1.21142 0.92510 0.98426 0.95874 0.90943 0.91273 0.91391 0.85603 0.85166 0.85183 0.74780 0.88453 0.88105 0.76876 0.93066 0.91635 0.92558 0.90536 0.91959 0.92899 0.93536 0.94686 0.78355 0.93602 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.10 -0.89 5.87 -104.68 -0.61 -1.51 16 3 C -0.10 -0.81 9.69 -39.49 -0.38 -1.19 16 4 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 5 C -0.09 -0.94 9.54 -39.18 -0.37 -1.32 16 6 C -0.13 -1.56 5.87 -104.97 -0.62 -2.18 16 7 C 0.56 7.84 7.77 -12.33 -0.10 7.75 16 8 O -0.54 -8.84 16.35 5.31 0.09 -8.75 16 9 N -0.71 -9.44 5.48 -62.43 -0.34 -9.78 16 10 C 0.10 1.25 6.15 -5.19 -0.03 1.22 16 11 C 0.51 7.63 7.86 -10.99 -0.09 7.54 16 12 O -0.53 -9.98 15.33 5.55 0.09 -9.90 16 13 N -0.71 -9.46 4.45 -53.81 -0.24 -9.70 16 14 C 0.14 2.18 2.52 -67.93 -0.17 2.01 16 15 H 0.11 2.16 7.05 -51.93 -0.37 1.80 16 16 C -0.16 -2.07 9.48 37.16 0.35 -1.71 16 17 C -0.13 -1.89 4.29 -26.73 -0.11 -2.01 16 18 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 19 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 20 C -0.17 -2.83 9.49 37.15 0.35 -2.48 16 21 N -0.72 -17.28 4.49 -53.43 -0.24 -17.52 16 22 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 26 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 30 C -0.06 -0.67 9.24 -39.19 -0.36 -1.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.29 6.41 -52.48 -0.34 0.95 16 37 H 0.41 5.43 5.47 -40.82 -0.22 5.21 16 38 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.14 1.47 7.65 -52.48 -0.40 1.07 16 LS Contribution 424.66 15.07 6.40 6.40 Total: -1.00 -34.54 424.66 -9.44 -43.98 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -8.27 Total: 15.79 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.62 Total: -0.85 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.10 Total: -64.45 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.54 -9.44 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136091175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.503 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds