Wall clock time and date at job start Wed Apr 1 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38386 * 119.93120 * 2 1 4 4 C 1.38338 * 120.29355 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.30372 * 4 3 2 6 6 C 1.39557 * 119.85101 * 359.44757 * 5 4 3 7 7 C 1.47847 * 120.13971 * 180.29942 * 6 5 4 8 8 O 1.21558 * 119.99627 * 180.22582 * 7 6 5 9 9 N 1.34770 * 120.00404 * 0.23034 * 7 6 5 10 10 C 1.46504 * 120.00394 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47462 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99936 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00406 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00541 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.46483 * 324.99686 * 14 13 11 16 16 C 1.52999 * 109.47236 * 84.99639 * 14 13 11 17 17 C 1.52997 * 109.47140 * 205.00008 * 14 13 11 18 18 C 1.52997 * 109.47538 * 64.99492 * 17 14 13 19 19 H 1.08998 * 109.47099 * 305.00307 * 18 17 14 20 20 C 1.52992 * 109.47472 * 185.00126 * 18 17 14 21 21 N 1.46505 * 109.46776 * 64.99974 * 18 17 14 22 22 C 1.36944 * 119.99623 * 205.00063 * 21 18 17 23 23 H 1.08003 * 120.00241 * 0.02562 * 22 21 18 24 24 C 1.38814 * 119.99355 * 179.97438 * 22 21 18 25 25 N 1.31613 * 120.00408 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99422 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47347 * 90.00028 * 26 24 22 28 28 H 1.48502 * 109.47089 * 210.00230 * 26 24 22 29 29 H 1.48505 * 109.47267 * 330.00077 * 26 24 22 30 30 C 1.37934 * 119.92680 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47620 * 89.99570 * 1 2 3 32 32 H 1.08996 * 109.47315 * 210.00405 * 1 2 3 33 33 H 1.09007 * 109.46604 * 329.99531 * 1 2 3 34 34 H 1.08001 * 119.85110 * 0.02755 * 3 2 1 35 35 H 1.08002 * 119.92371 * 180.02562 * 4 3 2 36 36 H 1.08004 * 120.06871 * 179.70410 * 5 4 3 37 37 H 0.97006 * 120.00067 * 359.97438 * 9 7 6 38 38 H 1.09008 * 109.46651 * 299.99648 * 10 9 7 39 39 H 1.08996 * 109.46977 * 59.99497 * 10 9 7 40 40 H 0.97003 * 119.99609 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.46866 * 60.00171 * 16 14 13 42 42 H 1.09000 * 109.46901 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.47026 * 300.00199 * 16 14 13 44 44 H 1.08997 * 109.46924 * 184.99906 * 17 14 13 45 45 H 1.09001 * 109.47022 * 304.99126 * 17 14 13 46 46 H 1.08999 * 109.47379 * 180.02562 * 20 18 17 47 47 H 1.09003 * 109.46723 * 299.99960 * 20 18 17 48 48 H 1.08992 * 109.47226 * 59.99946 * 20 18 17 49 49 H 0.96997 * 120.00651 * 25.00117 * 21 18 17 50 50 H 0.96998 * 119.99894 * 179.97438 * 25 24 22 51 51 H 1.08004 * 120.07180 * 359.95115 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0193 -0.0074 6 6 3.5910 -1.1937 -0.0021 7 6 4.3352 -2.4712 -0.0028 8 8 3.7313 -3.5262 -0.0023 9 7 5.6829 -2.4662 -0.0037 10 6 6.4202 -3.7321 -0.0049 11 6 7.9008 -3.4512 -0.0064 12 8 8.3007 -2.3062 -0.0070 13 7 8.7805 -4.4722 -0.0072 14 6 10.2198 -4.1991 -0.0081 15 1 10.4193 -3.3042 -0.5977 16 6 10.6984 -3.9806 1.4286 17 6 10.9641 -5.3884 -0.6184 18 6 10.5780 -5.5300 -2.0921 19 1 9.4940 -5.6052 -2.1780 20 6 11.2241 -6.7908 -2.6697 21 7 11.0466 -4.3572 -2.8345 22 6 10.4214 -3.9870 -3.9953 23 1 9.5827 -4.5595 -4.3633 24 6 10.8651 -2.8754 -4.6985 25 7 11.8868 -2.1775 -4.2498 26 14 10.0119 -2.3701 -6.2816 27 1 8.9102 -1.4243 -5.9701 28 1 10.9907 -1.7104 -7.1826 29 1 9.4564 -3.5739 -6.9506 30 6 2.1951 -1.1954 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 1.6539 2.1325 0.0005 35 1 4.1136 2.1475 -0.0001 36 1 5.3612 0.0275 -0.0126 37 1 6.1647 -1.6243 -0.0044 38 1 6.1597 -4.3051 0.8851 39 1 6.1584 -4.3042 -0.8949 40 1 8.4606 -5.3880 -0.0063 41 1 10.4988 -4.8755 2.0180 42 1 11.7692 -3.7770 1.4278 43 1 10.1681 -3.1333 1.8633 44 1 12.0387 -5.2242 -0.5385 45 1 10.6950 -6.2989 -0.0831 46 1 10.9494 -6.8915 -3.7197 47 1 12.3081 -6.7155 -2.5837 48 1 10.8755 -7.6634 -2.1173 49 1 11.7995 -3.8428 -2.5039 50 1 12.1969 -1.4010 -4.7414 51 1 1.6551 -2.1307 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136091175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:35 Heat of formation + Delta-G solvation = -73.922290 kcal Electronic energy + Delta-G solvation = -30145.638483 eV Core-core repulsion = 26043.586192 eV Total energy + Delta-G solvation = -4102.052291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56311 -40.76194 -39.45076 -38.35953 -36.18371 -35.63426 -34.06209 -33.83075 -32.41022 -32.04516 -30.43637 -28.95616 -27.66919 -27.55428 -25.66524 -24.76378 -22.83464 -22.64339 -21.67716 -21.33812 -21.18353 -19.39802 -19.09945 -17.83429 -17.52928 -17.11634 -16.97902 -16.80274 -16.46480 -15.86367 -15.81871 -15.66183 -15.57417 -15.34606 -14.83542 -14.64366 -14.51326 -14.41745 -14.27360 -13.91080 -13.75358 -13.56678 -13.34542 -13.15357 -13.07202 -12.95586 -12.88495 -12.80681 -12.65201 -12.58359 -12.25296 -12.18805 -12.04267 -11.82145 -11.55687 -11.41522 -11.23282 -11.01848 -10.90978 -10.42946 -10.03711 -9.95070 -9.71770 -8.94431 -7.92280 -5.17207 -0.21147 0.33842 1.42225 1.44010 1.50974 1.53387 1.72821 1.74393 2.39865 2.55644 2.80666 3.42190 3.51985 3.68002 3.79718 3.85846 3.92234 4.02674 4.13195 4.14192 4.25491 4.29057 4.33462 4.37218 4.42237 4.56049 4.66402 4.70140 4.80732 4.83069 4.84738 4.86103 4.94913 4.96270 5.03430 5.09948 5.11697 5.24112 5.25078 5.28431 5.36448 5.39141 5.42647 5.51296 5.53763 5.62070 5.65028 5.91484 6.30103 6.31240 6.52199 6.97301 7.22447 7.37135 8.17614 8.37116 9.31374 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.002608 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.674611 B =10734.805827 C =12344.457511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.100 4.100 6 C -0.151 4.151 7 C 0.560 3.440 8 O -0.572 6.572 9 N -0.711 5.711 10 C 0.105 3.895 11 C 0.507 3.493 12 O -0.576 6.576 13 N -0.697 5.697 14 C 0.147 3.853 15 H 0.050 0.950 16 C -0.151 4.151 17 C -0.118 4.118 18 C 0.162 3.838 19 H 0.044 0.956 20 C -0.157 4.157 21 N -0.731 5.731 22 C -0.224 4.224 23 H 0.068 0.932 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.959 3.041 27 H -0.295 1.295 28 H -0.296 1.296 29 H -0.270 1.270 30 C -0.076 4.076 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.416 0.584 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.027 0.973 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.370 0.630 50 H 0.247 0.753 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.809 -0.366 15.291 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.109 4.109 4 C -0.143 4.143 5 C -0.119 4.119 6 C -0.154 4.154 7 C 0.349 3.651 8 O -0.453 6.453 9 N -0.366 5.366 10 C -0.022 4.022 11 C 0.293 3.707 12 O -0.456 6.456 13 N -0.349 5.349 14 C 0.043 3.957 15 H 0.068 0.932 16 C -0.209 4.209 17 C -0.156 4.156 18 C 0.054 3.946 19 H 0.063 0.937 20 C -0.217 4.217 21 N -0.371 5.371 22 C -0.356 4.356 23 H 0.086 0.914 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.789 3.211 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.195 1.195 30 C -0.095 4.095 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.253 0.747 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.126 0.874 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.202 0.798 50 H 0.056 0.944 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.015 -0.362 15.149 23.540 hybrid contribution 0.558 0.637 -1.234 1.496 sum -17.457 0.275 13.915 22.326 Atomic orbital electron populations 1.20861 0.88616 1.04073 1.03383 1.20250 0.97992 0.92254 0.99473 1.21673 0.94190 0.98691 0.96325 1.21457 0.94894 0.98349 0.99563 1.21536 1.00457 0.92128 0.97760 1.19860 0.94846 0.92286 1.08455 1.18560 0.81621 0.89467 0.75431 1.90729 1.69026 1.33545 1.51961 1.45673 1.06032 1.10300 1.74546 1.21151 0.87380 0.87566 1.06117 1.20709 0.89021 0.85408 0.75548 1.90702 1.80611 1.22854 1.51457 1.45742 1.06193 1.09457 1.73528 1.20866 0.79118 0.99037 0.96717 0.93188 1.22080 1.01510 1.02168 0.95163 1.22077 1.00599 0.98091 0.94846 1.20544 0.96712 0.86639 0.90714 0.93748 1.22310 1.00488 0.98677 1.00187 1.42595 1.37845 1.30987 1.25655 1.19484 1.09609 1.07058 0.99479 0.91359 1.25395 0.99854 0.99230 1.02429 1.69787 1.29584 1.20869 1.41672 0.85347 0.77267 0.78034 0.80443 1.22326 1.22224 1.19496 1.21248 0.92213 0.99231 0.96797 0.90214 0.91078 0.89472 0.82476 0.82962 0.85267 0.74823 0.85945 0.87770 0.74707 0.89931 0.91266 0.94137 0.90565 0.87425 0.95325 0.93959 0.90498 0.79807 0.94385 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.49 16 2 C -0.10 -1.66 5.87 -19.90 -0.12 -1.78 16 3 C -0.09 -1.32 9.69 22.33 0.22 -1.10 16 4 C -0.12 -2.09 10.03 22.23 0.22 -1.86 16 5 C -0.10 -2.15 9.54 22.53 0.21 -1.93 16 6 C -0.15 -3.78 5.87 -20.09 -0.12 -3.89 16 7 C 0.56 16.12 7.77 86.79 0.67 16.80 16 8 O -0.57 -19.08 16.35 -3.90 -0.06 -19.15 16 9 N -0.71 -19.41 5.48 -469.70 -2.57 -21.98 16 10 C 0.10 2.59 6.15 85.63 0.53 3.12 16 11 C 0.51 15.22 7.86 87.66 0.69 15.91 16 12 O -0.58 -22.50 15.33 -3.05 -0.05 -22.55 16 13 N -0.70 -17.78 4.45 -442.54 -1.97 -19.75 16 14 C 0.15 4.36 2.52 44.99 0.11 4.47 16 15 H 0.05 2.10 7.05 -2.38 -0.02 2.09 16 16 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 17 C -0.12 -3.13 4.29 30.59 0.13 -3.00 16 18 C 0.16 5.71 2.84 44.99 0.13 5.83 16 19 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 20 C -0.16 -5.00 9.49 71.98 0.68 -4.32 16 21 N -0.73 -35.46 4.49 -322.94 -1.45 -36.91 16 22 C -0.22 -12.42 9.93 84.03 0.83 -11.59 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 24 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 25 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 26 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 27 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 30 C -0.08 -1.69 9.24 22.52 0.21 -1.48 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.09 0.60 8.08 -2.38 -0.02 0.58 16 34 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.13 2.68 6.41 -2.91 -0.02 2.66 16 37 H 0.41 11.39 5.47 -92.70 -0.51 10.89 16 38 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.42 7.45 8.60 -92.71 -0.80 6.66 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.37 19.68 7.80 -92.71 -0.72 18.96 16 50 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.13 2.92 7.65 -2.91 -0.02 2.90 16 Total: -1.00 -78.52 424.66 1.40 -77.11 By element: Atomic # 1 Polarization: 46.94 SS G_CDS: -1.08 Total: 45.87 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.27 Total: 7.68 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -5.71 Total: -138.79 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.11 Total: -41.70 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -78.52 1.40 -77.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136091175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.192 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds