Wall clock time and date at job start Wed Apr 1 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38387 * 119.92403 * 2 1 4 4 C 1.38339 * 120.29043 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14653 * 359.69572 * 4 3 2 6 6 C 1.39557 * 119.85028 * 0.53804 * 5 4 3 7 7 C 1.47844 * 120.14219 * 179.76640 * 6 5 4 8 8 O 1.21560 * 119.99664 * 179.72157 * 7 6 5 9 9 N 1.34778 * 120.00338 * 359.72066 * 7 6 5 10 10 C 1.46497 * 119.99990 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99543 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99607 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47605 * 34.99616 * 14 13 11 16 16 C 1.53005 * 109.47295 * 274.99588 * 14 13 11 17 17 C 1.53006 * 109.47329 * 155.00046 * 14 13 11 18 18 C 1.52997 * 109.46841 * 295.00084 * 17 14 13 19 19 H 1.09005 * 109.47159 * 54.99606 * 18 17 14 20 20 C 1.52999 * 109.47264 * 174.99605 * 18 17 14 21 21 N 1.46498 * 109.47167 * 294.99436 * 18 17 14 22 22 C 1.36935 * 120.00239 * 154.99975 * 21 18 17 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 C 1.37937 * 119.93308 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46766 * 270.01971 * 1 2 3 32 32 H 1.08993 * 109.47528 * 30.01688 * 1 2 3 33 33 H 1.09000 * 109.47118 * 150.02174 * 1 2 3 34 34 H 1.07994 * 119.85360 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.92484 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.07428 * 180.27534 * 5 4 3 37 37 H 0.97003 * 119.99685 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47551 * 59.99955 * 10 9 7 39 39 H 1.09003 * 109.47285 * 299.99509 * 10 9 7 40 40 H 0.97002 * 120.00356 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47043 * 300.01013 * 16 14 13 42 42 H 1.09001 * 109.46484 * 60.00332 * 16 14 13 43 43 H 1.08994 * 109.47185 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.47489 * 174.99502 * 17 14 13 45 45 H 1.09001 * 109.46720 * 54.99468 * 17 14 13 46 46 H 1.09005 * 109.47033 * 59.99923 * 20 18 17 47 47 H 1.08994 * 109.47214 * 179.97438 * 20 18 17 48 48 H 1.08994 * 109.47102 * 299.99987 * 20 18 17 49 49 H 0.97004 * 119.99747 * 335.00715 * 21 18 17 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 51 51 H 1.07997 * 120.06580 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2813 0.0195 0.0053 6 6 3.5912 -1.1935 0.0003 7 6 4.3354 -2.4710 0.0013 8 8 3.7316 -3.5260 0.0021 9 7 5.6832 -2.4658 0.0012 10 6 6.4205 -3.7317 0.0016 11 6 7.9011 -3.4506 0.0009 12 8 8.3008 -2.3056 -0.0004 13 7 8.7808 -4.4716 0.0016 14 6 10.2201 -4.1983 0.0014 15 1 10.4200 -3.3031 0.5902 16 6 10.6978 -3.9807 -1.4358 17 6 10.9651 -5.3872 0.6119 18 6 10.5800 -5.5279 2.0859 19 1 9.4960 -5.6032 2.1726 20 6 11.2266 -6.7884 2.6639 21 7 11.0489 -4.3547 2.8273 22 6 10.4246 -3.9838 3.9883 23 1 9.5867 -4.5565 4.3576 24 6 10.8686 -2.8718 4.6905 25 7 11.8932 -2.1770 4.2433 26 14 10.0175 -2.3663 6.2746 27 1 8.9192 -1.4160 5.9649 28 1 9.4577 -3.5693 6.9414 29 1 10.9987 -1.7119 7.1768 30 6 2.1953 -1.1954 0.0005 31 1 -0.3633 0.0004 1.0278 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6537 2.1325 -0.0004 35 1 4.1135 2.1477 -0.0009 36 1 5.3612 0.0278 0.0093 37 1 6.1649 -1.6239 0.0002 38 1 6.1594 -4.3046 -0.8881 39 1 6.1594 -4.3040 0.8918 40 1 8.4610 -5.3874 0.0029 41 1 10.4977 -4.8759 -2.0246 42 1 10.1670 -3.1338 -1.8706 43 1 11.7686 -3.7779 -1.4359 44 1 12.0396 -5.2230 0.5311 45 1 10.6955 -6.2981 0.0773 46 1 12.3105 -6.7131 2.5771 47 1 10.9526 -6.8884 3.7140 48 1 10.8777 -7.6613 2.1123 49 1 11.8016 -3.8404 2.4957 50 1 12.3355 -2.4397 3.4209 51 1 1.6553 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136091178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:49 Heat of formation + Delta-G solvation = -50.124975 kcal Electronic energy + Delta-G solvation = -30186.327530 eV Core-core repulsion = 26085.307168 eV Total energy + Delta-G solvation = -4101.020362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54979 -39.70559 -38.54010 -37.05642 -34.87925 -34.46892 -33.14298 -32.41567 -31.47984 -30.93097 -28.35148 -28.01597 -26.96931 -26.41362 -23.90436 -23.42274 -22.09068 -21.52768 -20.49647 -20.35886 -19.93726 -18.30316 -17.39950 -16.78971 -16.55246 -16.08493 -15.92962 -15.67210 -15.00502 -14.89934 -14.80386 -14.55872 -14.17085 -14.00043 -13.90499 -13.58009 -13.49003 -13.25547 -13.21753 -13.00395 -12.63756 -12.55618 -12.22354 -12.16566 -12.09047 -11.88015 -11.73869 -11.73514 -11.33998 -11.08044 -10.74173 -10.53033 -10.47070 -10.16470 -10.13153 -9.98097 -9.80571 -9.39175 -9.16523 -9.13837 -8.99352 -8.89753 -8.86552 -6.99672 -6.05688 -3.05287 0.60949 1.08115 2.63683 2.71695 2.76249 3.44422 3.53619 3.58630 3.62169 3.71665 4.44165 4.47205 4.58973 4.68672 4.70445 4.84852 4.97736 5.00970 5.05132 5.17306 5.25663 5.28620 5.30570 5.35322 5.36013 5.45673 5.55342 5.63674 5.65997 5.76978 5.77961 5.82173 5.89220 6.01303 6.04929 6.10158 6.13785 6.18224 6.22915 6.23900 6.33025 6.44049 6.54317 6.61571 6.66722 6.81117 6.98254 7.34524 7.57276 7.84040 8.02691 8.28852 8.79646 9.26457 10.12618 10.27147 11.42725 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.002608 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.157723 B =10734.359736 C =12333.272610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.096 4.096 4 C -0.122 4.122 5 C -0.088 4.088 6 C -0.129 4.129 7 C 0.562 3.438 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.100 3.900 11 C 0.510 3.490 12 O -0.532 6.532 13 N -0.710 5.710 14 C 0.145 3.855 15 H 0.103 0.897 16 C -0.161 4.161 17 C -0.133 4.133 18 C 0.176 3.824 19 H 0.047 0.953 20 C -0.165 4.165 21 N -0.731 5.731 22 C -0.326 4.326 23 H 0.061 0.939 24 C -0.044 4.044 25 N -0.944 5.944 26 Si 1.078 2.922 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.288 1.288 30 C -0.061 4.061 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.035 0.965 49 H 0.365 0.635 50 H 0.255 0.745 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 0.268 -14.118 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.132 4.132 7 C 0.349 3.651 8 O -0.420 6.420 9 N -0.366 5.366 10 C -0.027 4.027 11 C 0.295 3.705 12 O -0.409 6.409 13 N -0.361 5.361 14 C 0.041 3.959 15 H 0.121 0.879 16 C -0.219 4.219 17 C -0.171 4.171 18 C 0.066 3.934 19 H 0.065 0.935 20 C -0.225 4.225 21 N -0.375 5.375 22 C -0.457 4.457 23 H 0.079 0.921 24 C -0.242 4.242 25 N -0.589 5.589 26 Si 0.910 3.090 27 H -0.224 1.224 28 H -0.223 1.223 29 H -0.214 1.214 30 C -0.079 4.079 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.252 0.748 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.232 0.768 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.199 0.801 50 H 0.066 0.934 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.975 1.331 -12.769 21.283 hybrid contribution 0.492 -1.149 -1.209 1.740 sum -16.483 0.182 -13.978 21.613 Atomic orbital electron populations 1.20798 0.90642 1.02981 1.02628 1.19911 0.96481 0.92790 1.00651 1.21272 0.94325 0.97696 0.98103 1.21130 0.94241 0.98181 1.00460 1.21428 1.00265 0.91835 0.97188 1.19855 0.94319 0.92662 1.06361 1.18237 0.81599 0.89057 0.76174 1.90765 1.68554 1.32445 1.50202 1.45604 1.06041 1.09959 1.74955 1.21084 0.89173 0.87615 1.04837 1.20320 0.88014 0.85815 0.76321 1.90715 1.79813 1.21004 1.49362 1.45846 1.06852 1.08773 1.74610 1.21043 0.78252 1.00676 0.95941 0.87918 1.22185 1.01564 1.01492 0.96705 1.22197 1.00622 0.96777 0.97533 1.20166 0.96893 0.87804 0.88502 0.93483 1.22438 1.00699 0.98021 1.01361 1.42406 1.38276 1.30009 1.26771 1.19976 1.13170 1.11673 1.00844 0.92083 1.25668 0.99376 0.94740 1.04382 1.70846 1.22613 1.41721 1.23761 0.83252 0.75083 0.75307 0.75370 1.22404 1.22266 1.21429 1.21140 0.92495 0.98434 0.95870 0.90929 0.91382 0.91278 0.85583 0.85149 0.85208 0.74776 0.88436 0.88079 0.76820 0.92947 0.92461 0.91678 0.90678 0.91771 0.93671 0.92816 0.94552 0.80142 0.93413 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.10 -0.89 5.87 -104.68 -0.61 -1.50 16 3 C -0.10 -0.80 9.69 -39.49 -0.38 -1.18 16 4 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 5 C -0.09 -0.94 9.54 -39.18 -0.37 -1.31 16 6 C -0.13 -1.56 5.87 -104.97 -0.62 -2.18 16 7 C 0.56 7.84 7.77 -12.33 -0.10 7.75 16 8 O -0.54 -8.83 16.35 5.31 0.09 -8.74 16 9 N -0.71 -9.45 5.48 -62.43 -0.34 -9.80 16 10 C 0.10 1.26 6.15 -5.19 -0.03 1.23 16 11 C 0.51 7.67 7.86 -10.98 -0.09 7.58 16 12 O -0.53 -10.01 15.33 5.56 0.09 -9.93 16 13 N -0.71 -9.52 4.45 -53.80 -0.24 -9.76 16 14 C 0.14 2.19 2.52 -67.93 -0.17 2.02 16 15 H 0.10 2.07 7.06 -51.93 -0.37 1.70 16 16 C -0.16 -2.06 9.48 37.16 0.35 -1.70 16 17 C -0.13 -1.92 4.29 -26.73 -0.11 -2.03 16 18 C 0.18 3.27 2.84 -67.93 -0.19 3.08 16 19 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 20 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 21 N -0.73 -17.59 4.49 -53.43 -0.24 -17.83 16 22 C -0.33 -9.05 9.93 -15.06 -0.15 -9.20 16 23 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 24 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 25 N -0.94 -29.36 13.70 55.49 0.76 -28.60 16 26 Si 1.08 26.61 29.92 -169.99 -5.09 21.52 16 27 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C -0.06 -0.67 9.24 -39.19 -0.36 -1.03 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.28 6.40 -52.49 -0.34 0.95 16 37 H 0.41 5.44 5.47 -40.82 -0.22 5.22 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.37 9.19 6.63 -40.82 -0.27 8.92 16 50 H 0.25 7.78 6.77 -40.82 -0.28 7.50 16 51 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 422.96 15.07 6.37 6.37 Total: -1.00 -35.63 422.96 -9.38 -45.01 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -8.16 Total: 15.98 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.62 Total: -4.23 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.06 Total: -65.98 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.17 Total: -18.67 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -5.09 Total: 21.52 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.63 -9.38 -45.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136091178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.116 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds