Wall clock time and date at job start Wed Apr 1 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38387 * 119.92403 * 2 1 4 4 C 1.38339 * 120.29043 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14653 * 359.69572 * 4 3 2 6 6 C 1.39557 * 119.85028 * 0.53804 * 5 4 3 7 7 C 1.47844 * 120.14219 * 179.76640 * 6 5 4 8 8 O 1.21560 * 119.99664 * 179.72157 * 7 6 5 9 9 N 1.34778 * 120.00338 * 359.72066 * 7 6 5 10 10 C 1.46497 * 119.99990 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99543 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99607 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47605 * 34.99616 * 14 13 11 16 16 C 1.53005 * 109.47295 * 274.99588 * 14 13 11 17 17 C 1.53006 * 109.47329 * 155.00046 * 14 13 11 18 18 C 1.52997 * 109.46841 * 295.00084 * 17 14 13 19 19 H 1.09005 * 109.47159 * 54.99606 * 18 17 14 20 20 C 1.52999 * 109.47264 * 174.99605 * 18 17 14 21 21 N 1.46498 * 109.47167 * 294.99436 * 18 17 14 22 22 C 1.36935 * 120.00239 * 154.99975 * 21 18 17 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 C 1.37937 * 119.93308 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46766 * 270.01971 * 1 2 3 32 32 H 1.08993 * 109.47528 * 30.01688 * 1 2 3 33 33 H 1.09000 * 109.47118 * 150.02174 * 1 2 3 34 34 H 1.07994 * 119.85360 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.92484 * 179.97438 * 4 3 2 36 36 H 1.07994 * 120.07428 * 180.27534 * 5 4 3 37 37 H 0.97003 * 119.99685 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47551 * 59.99955 * 10 9 7 39 39 H 1.09003 * 109.47285 * 299.99509 * 10 9 7 40 40 H 0.97002 * 120.00356 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47043 * 300.01013 * 16 14 13 42 42 H 1.09001 * 109.46484 * 60.00332 * 16 14 13 43 43 H 1.08994 * 109.47185 * 180.02562 * 16 14 13 44 44 H 1.08996 * 109.47489 * 174.99502 * 17 14 13 45 45 H 1.09001 * 109.46720 * 54.99468 * 17 14 13 46 46 H 1.09005 * 109.47033 * 59.99923 * 20 18 17 47 47 H 1.08994 * 109.47214 * 179.97438 * 20 18 17 48 48 H 1.08994 * 109.47102 * 299.99987 * 20 18 17 49 49 H 0.97004 * 119.99747 * 335.00715 * 21 18 17 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 51 51 H 1.07997 * 120.06580 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2813 0.0195 0.0053 6 6 3.5912 -1.1935 0.0003 7 6 4.3354 -2.4710 0.0013 8 8 3.7316 -3.5260 0.0021 9 7 5.6832 -2.4658 0.0012 10 6 6.4205 -3.7317 0.0016 11 6 7.9011 -3.4506 0.0009 12 8 8.3008 -2.3056 -0.0004 13 7 8.7808 -4.4716 0.0016 14 6 10.2201 -4.1983 0.0014 15 1 10.4200 -3.3031 0.5902 16 6 10.6978 -3.9807 -1.4358 17 6 10.9651 -5.3872 0.6119 18 6 10.5800 -5.5279 2.0859 19 1 9.4960 -5.6032 2.1726 20 6 11.2266 -6.7884 2.6639 21 7 11.0489 -4.3547 2.8273 22 6 10.4246 -3.9838 3.9883 23 1 9.5867 -4.5565 4.3576 24 6 10.8686 -2.8718 4.6905 25 7 11.8932 -2.1770 4.2433 26 14 10.0175 -2.3663 6.2746 27 1 8.9192 -1.4160 5.9649 28 1 9.4577 -3.5693 6.9414 29 1 10.9987 -1.7119 7.1768 30 6 2.1953 -1.1954 0.0005 31 1 -0.3633 0.0004 1.0278 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6537 2.1325 -0.0004 35 1 4.1135 2.1477 -0.0009 36 1 5.3612 0.0278 0.0093 37 1 6.1649 -1.6239 0.0002 38 1 6.1594 -4.3046 -0.8881 39 1 6.1594 -4.3040 0.8918 40 1 8.4610 -5.3874 0.0029 41 1 10.4977 -4.8759 -2.0246 42 1 10.1670 -3.1338 -1.8706 43 1 11.7686 -3.7779 -1.4359 44 1 12.0396 -5.2230 0.5311 45 1 10.6955 -6.2981 0.0773 46 1 12.3105 -6.7131 2.5771 47 1 10.9526 -6.8884 3.7140 48 1 10.8777 -7.6613 2.1123 49 1 11.8016 -3.8404 2.4957 50 1 12.3355 -2.4397 3.4209 51 1 1.6553 -2.1306 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136091178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:48 Heat of formation + Delta-G solvation = -74.451092 kcal Electronic energy + Delta-G solvation = -30187.382390 eV Core-core repulsion = 26085.307168 eV Total energy + Delta-G solvation = -4102.075222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.59521 -40.81071 -39.46861 -38.50296 -36.38653 -35.68182 -34.22847 -33.84730 -32.43284 -32.06017 -30.19491 -28.99211 -27.70787 -27.61415 -25.56291 -24.78185 -22.84021 -22.74271 -21.77608 -21.40304 -21.31553 -19.51281 -19.21510 -17.87787 -17.60011 -17.14174 -17.00058 -16.82020 -16.51354 -16.04452 -15.86560 -15.80306 -15.56644 -15.41175 -14.85961 -14.68805 -14.65377 -14.50584 -14.37426 -13.92569 -13.81668 -13.56215 -13.40592 -13.16194 -13.07332 -12.94085 -12.89019 -12.80758 -12.58955 -12.53172 -12.20152 -12.04644 -11.91944 -11.87958 -11.58647 -11.25214 -11.19200 -11.07310 -10.91893 -10.45554 -10.10411 -9.96313 -9.72177 -9.05609 -8.34990 -5.26580 -0.21882 0.33485 1.47384 1.52798 1.63243 1.69237 1.72565 1.76502 2.35029 2.69742 2.80064 3.43469 3.48459 3.63430 3.72802 3.79318 3.87028 3.91908 4.03905 4.12956 4.21415 4.24912 4.30636 4.32975 4.36784 4.46299 4.60730 4.65914 4.71434 4.76053 4.83008 4.84344 4.86033 4.93661 4.96046 5.01247 5.05949 5.16117 5.24827 5.26415 5.27836 5.33377 5.38848 5.51613 5.53150 5.53663 5.64072 5.91131 6.27874 6.45388 6.53638 6.95251 7.14722 7.16210 8.06239 8.16579 9.17296 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.002608 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.157723 B =10734.359736 C =12333.272610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.125 4.125 5 C -0.100 4.100 6 C -0.152 4.152 7 C 0.560 3.440 8 O -0.571 6.571 9 N -0.712 5.712 10 C 0.105 3.895 11 C 0.507 3.493 12 O -0.577 6.577 13 N -0.698 5.698 14 C 0.148 3.852 15 H 0.046 0.954 16 C -0.151 4.151 17 C -0.119 4.119 18 C 0.167 3.833 19 H 0.043 0.957 20 C -0.156 4.156 21 N -0.742 5.742 22 C -0.313 4.313 23 H 0.059 0.941 24 C -0.108 4.108 25 N -0.978 5.978 26 Si 1.120 2.880 27 H -0.293 1.293 28 H -0.273 1.273 29 H -0.292 1.292 30 C -0.076 4.076 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.416 0.584 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.078 0.922 49 H 0.356 0.644 50 H 0.244 0.756 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -0.579 -15.145 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.142 4.142 5 C -0.119 4.119 6 C -0.155 4.155 7 C 0.350 3.650 8 O -0.452 6.452 9 N -0.366 5.366 10 C -0.022 4.022 11 C 0.293 3.707 12 O -0.456 6.456 13 N -0.350 5.350 14 C 0.043 3.957 15 H 0.065 0.935 16 C -0.209 4.209 17 C -0.157 4.157 18 C 0.059 3.941 19 H 0.061 0.939 20 C -0.216 4.216 21 N -0.385 5.385 22 C -0.445 4.445 23 H 0.077 0.923 24 C -0.299 4.299 25 N -0.627 5.627 26 Si 0.947 3.053 27 H -0.220 1.220 28 H -0.199 1.199 29 H -0.219 1.219 30 C -0.095 4.095 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.147 0.853 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.253 0.747 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.097 0.903 49 H 0.188 0.812 50 H 0.054 0.946 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.596 0.396 -13.824 23.175 hybrid contribution 0.950 -0.929 -0.947 1.632 sum -17.645 -0.533 -14.771 23.018 Atomic orbital electron populations 1.20862 0.88598 1.04071 1.03405 1.20253 0.98000 0.92243 0.99448 1.21676 0.94179 0.98701 0.96271 1.21457 0.94901 0.98340 0.99539 1.21529 1.00430 0.92140 0.97782 1.19849 0.94849 0.92241 1.08525 1.18572 0.81582 0.89499 0.75390 1.90730 1.69019 1.33553 1.51937 1.45670 1.06061 1.10233 1.74624 1.21137 0.87259 0.87643 1.06114 1.20737 0.89089 0.85370 0.75467 1.90699 1.80642 1.22836 1.51449 1.45739 1.06145 1.09503 1.73613 1.20848 0.79271 0.98765 0.96781 0.93546 1.22082 1.01529 1.02302 0.95012 1.22098 1.00582 0.98287 0.94749 1.20479 0.96632 0.86353 0.90622 0.93919 1.22298 1.00407 0.98731 1.00165 1.42605 1.37896 1.31652 1.26326 1.20252 1.12214 1.10625 1.01447 0.92312 1.26926 0.99960 0.95659 1.07382 1.70948 1.24459 1.43198 1.24128 0.82699 0.74238 0.75831 0.72550 1.22033 1.19874 1.21882 1.21246 0.92190 0.99244 0.96788 0.90187 0.89460 0.91090 0.82442 0.82946 0.85317 0.74820 0.85915 0.87803 0.74697 0.89830 0.94035 0.91200 0.90531 0.87271 0.93971 0.95472 0.90325 0.81181 0.94592 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.47 16 2 C -0.10 -1.65 5.87 -19.90 -0.12 -1.77 16 3 C -0.09 -1.30 9.69 22.33 0.22 -1.08 16 4 C -0.12 -2.07 10.03 22.23 0.22 -1.85 16 5 C -0.10 -2.15 9.54 22.53 0.21 -1.93 16 6 C -0.15 -3.77 5.87 -20.09 -0.12 -3.89 16 7 C 0.56 16.14 7.77 86.79 0.67 16.82 16 8 O -0.57 -19.09 16.35 -3.90 -0.06 -19.16 16 9 N -0.71 -19.48 5.48 -469.70 -2.57 -22.05 16 10 C 0.11 2.63 6.15 85.63 0.53 3.16 16 11 C 0.51 15.34 7.86 87.66 0.69 16.03 16 12 O -0.58 -22.59 15.33 -3.04 -0.05 -22.64 16 13 N -0.70 -17.99 4.45 -442.51 -1.97 -19.95 16 14 C 0.15 4.38 2.52 45.00 0.11 4.50 16 15 H 0.05 1.95 7.06 -2.39 -0.02 1.93 16 16 C -0.15 -3.63 9.48 71.98 0.68 -2.94 16 17 C -0.12 -3.17 4.29 30.60 0.13 -3.03 16 18 C 0.17 5.99 2.84 44.99 0.13 6.12 16 19 H 0.04 1.57 7.56 -2.38 -0.02 1.55 16 20 C -0.16 -5.08 9.49 71.98 0.68 -4.40 16 21 N -0.74 -36.24 4.49 -322.94 -1.45 -37.69 16 22 C -0.31 -17.68 9.93 84.03 0.83 -16.85 16 23 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 24 C -0.11 -6.44 5.50 84.86 0.47 -5.97 16 25 N -0.98 -62.78 13.70 21.65 0.30 -62.48 16 26 Si 1.12 54.40 29.92 68.60 2.05 56.45 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 30 C -0.08 -1.68 9.24 22.53 0.21 -1.47 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.09 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.13 2.68 6.40 -2.91 -0.02 2.66 16 37 H 0.41 11.43 5.47 -92.71 -0.51 10.93 16 38 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.42 7.62 8.60 -92.71 -0.80 6.82 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.36 18.55 6.63 -92.71 -0.61 17.94 16 50 H 0.24 15.54 6.77 -92.71 -0.63 14.91 16 51 H 0.13 2.91 7.65 -2.91 -0.02 2.89 16 Total: -1.00 -81.14 422.96 1.69 -79.45 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -0.82 Total: 47.12 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.27 Total: 0.96 kcal Atomic # 7 Polarization: -136.48 SS G_CDS: -5.70 Total: -142.18 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.11 Total: -41.80 kcal Atomic # 14 Polarization: 54.40 SS G_CDS: 2.05 Total: 56.45 kcal Total: -81.14 1.69 -79.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136091178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.994 kcal (2) G-P(sol) polarization free energy of solvation -81.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds