Wall clock time and date at job start Wed Apr 1 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 120.07546 * 2 1 4 4 C 1.38338 * 120.14805 * 179.97438 * 3 2 1 5 5 C 1.38388 * 120.28965 * 0.02990 * 4 3 2 6 6 C 1.37933 * 120.14555 * 359.73807 * 5 4 3 7 7 C 1.39557 * 120.07247 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14503 * 359.97438 * 7 2 1 9 9 O 1.21548 * 120.00259 * 353.99446 * 8 7 2 10 10 N 1.34781 * 120.00079 * 173.98562 * 8 7 2 11 11 C 1.46500 * 119.99926 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46812 * 180.02562 * 11 10 8 13 13 O 1.21274 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99878 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99914 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.47345 * 324.99754 * 15 14 12 17 17 C 1.53000 * 109.47455 * 85.00003 * 15 14 12 18 18 C 1.53001 * 109.47060 * 205.00319 * 15 14 12 19 19 C 1.52995 * 109.47072 * 64.99970 * 18 15 14 20 20 H 1.09006 * 109.47472 * 304.99914 * 19 18 15 21 21 C 1.53007 * 109.47149 * 185.00164 * 19 18 15 22 22 N 1.46496 * 109.47495 * 65.00066 * 19 18 15 23 23 C 1.36933 * 120.00249 * 204.72235 * 22 19 18 24 24 H 1.08000 * 119.99962 * 0.27947 * 23 22 19 25 25 C 1.38811 * 119.99986 * 180.27503 * 23 22 19 26 26 N 1.31616 * 120.00204 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99894 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47133 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46717 * 119.99879 * 27 25 23 30 30 H 1.48498 * 109.47072 * 239.99794 * 27 25 23 31 31 H 1.09005 * 109.46691 * 263.47303 * 1 2 3 32 32 H 1.08996 * 109.46924 * 23.47253 * 1 2 3 33 33 H 1.08997 * 109.47290 * 143.47345 * 1 2 3 34 34 H 1.08002 * 119.92827 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.85303 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.92331 * 179.97438 * 5 4 3 37 37 H 1.07996 * 120.07429 * 180.27210 * 6 5 4 38 38 H 0.97006 * 119.99674 * 0.02562 * 10 8 7 39 39 H 1.08991 * 109.46918 * 60.00925 * 11 10 8 40 40 H 1.08997 * 109.47193 * 300.00125 * 11 10 8 41 41 H 0.96994 * 119.99617 * 0.02562 * 14 12 11 42 42 H 1.08995 * 109.47399 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47110 * 300.00198 * 17 15 14 44 44 H 1.08998 * 109.46593 * 59.99885 * 17 15 14 45 45 H 1.09001 * 109.46973 * 304.99899 * 18 15 14 46 46 H 1.09001 * 109.47365 * 184.99777 * 18 15 14 47 47 H 1.08997 * 109.47150 * 59.99919 * 21 19 18 48 48 H 1.09000 * 109.47265 * 180.02562 * 21 19 18 49 49 H 1.08997 * 109.46990 * 300.00203 * 21 19 18 50 50 H 0.97000 * 119.99603 * 25.00295 * 22 19 18 51 51 H 0.97005 * 120.00215 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0017 0.0004 6 6 3.6023 -1.1989 0.0053 7 6 2.2063 -1.2077 0.0005 8 6 1.4720 -2.4909 0.0017 9 8 0.2615 -2.4983 0.1123 10 7 2.1446 -3.6525 -0.1201 11 6 1.4170 -4.9240 -0.1184 12 6 2.3939 -6.0619 -0.2664 13 8 3.5809 -5.8333 -0.3632 14 7 1.9484 -7.3338 -0.2901 15 6 2.8980 -8.4399 -0.4333 16 1 3.7162 -8.1343 -1.0856 17 6 3.4548 -8.8155 0.9414 18 6 2.1847 -9.6488 -1.0423 19 6 1.7369 -9.3127 -2.4662 20 1 1.1264 -8.4098 -2.4516 21 6 0.9160 -10.4743 -3.0302 22 7 2.9145 -9.0924 -3.3093 23 6 2.8172 -8.3136 -4.4314 24 1 1.8733 -7.8581 -4.6924 25 6 3.9316 -8.1095 -5.2334 26 7 5.0818 -8.6649 -4.9156 27 14 3.7990 -7.0465 -6.7638 28 1 2.4087 -6.5420 -6.8972 29 1 4.7332 -5.8976 -6.6509 30 1 4.1499 -7.8542 -7.9595 31 1 -0.3633 -0.1168 1.0211 32 1 -0.3633 0.9426 -0.4093 33 1 -0.3634 -0.8258 -0.6116 34 1 1.6585 2.1293 -0.0004 35 1 4.1182 2.1331 0.0010 36 1 5.3613 0.0099 0.0005 37 1 4.1493 -2.1301 0.0096 38 1 3.1107 -3.6465 -0.2081 39 1 0.7116 -4.9400 -0.9491 40 1 0.8747 -5.0310 0.8210 41 1 0.9990 -7.5165 -0.2122 42 1 4.1610 -9.6388 0.8348 43 1 3.9629 -7.9543 1.3752 44 1 2.6367 -9.1211 1.5935 45 1 1.3135 -9.8995 -0.4371 46 1 2.8667 -10.4987 -1.0670 47 1 0.0398 -10.6382 -2.4029 48 1 0.5974 -10.2350 -4.0447 49 1 1.5264 -11.3771 -3.0448 50 1 3.7622 -9.5015 -3.0749 51 1 5.8607 -8.5220 -5.4758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136127600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:53 Heat of formation + Delta-G solvation = -44.700858 kcal Electronic energy + Delta-G solvation = -30457.347493 eV Core-core repulsion = 26356.562338 eV Total energy + Delta-G solvation = -4100.785155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63623 -39.68108 -38.36596 -36.95131 -34.85491 -34.41185 -32.73979 -32.25124 -31.68232 -30.82127 -28.62488 -27.95852 -26.81910 -26.32381 -23.84897 -23.60847 -21.98290 -21.26329 -20.63551 -20.38439 -19.74968 -18.39678 -17.23917 -16.59068 -16.47207 -16.02577 -15.83873 -15.63866 -15.03359 -14.99842 -14.81882 -14.53262 -13.97345 -13.82400 -13.75946 -13.52249 -13.34342 -13.16876 -13.02133 -12.77826 -12.49077 -12.25194 -12.21888 -12.12895 -12.01191 -11.95527 -11.75546 -11.62996 -11.31709 -11.07010 -10.84648 -10.63128 -10.46391 -10.21732 -9.89915 -9.80117 -9.74738 -9.62573 -9.37451 -9.16406 -8.90876 -8.88934 -8.80960 -6.92647 -5.73706 -3.01657 0.63931 1.10922 2.67709 2.76809 2.80868 3.44879 3.49558 3.50718 3.52526 3.62781 4.49055 4.55114 4.61856 4.62516 4.74588 4.79346 5.06031 5.09721 5.18792 5.23146 5.31307 5.38258 5.43644 5.45989 5.58827 5.60545 5.65241 5.66290 5.68511 5.85874 5.90233 5.99059 5.99957 6.06154 6.10620 6.17787 6.21206 6.27037 6.31595 6.39015 6.41914 6.54492 6.64635 6.65829 6.75573 6.89070 7.06220 7.37827 7.63429 7.72591 8.06572 8.34605 8.44672 9.56210 10.13320 10.47430 11.49002 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.002766 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.000076 B =10119.365179 C =11585.885643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.023 4.023 3 C -0.135 4.135 4 C -0.090 4.090 5 C -0.135 4.135 6 C -0.078 4.078 7 C -0.140 4.140 8 C 0.561 3.439 9 O -0.536 6.536 10 N -0.711 5.711 11 C 0.101 3.899 12 C 0.510 3.490 13 O -0.532 6.532 14 N -0.710 5.710 15 C 0.144 3.856 16 H 0.107 0.893 17 C -0.161 4.161 18 C -0.131 4.131 19 C 0.171 3.829 20 H 0.046 0.954 21 C -0.166 4.166 22 N -0.720 5.720 23 C -0.234 4.234 24 H 0.067 0.933 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.901 3.099 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.412 0.588 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.034 0.966 48 H 0.052 0.948 49 H 0.045 0.955 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 12.670 15.509 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.108 4.108 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.143 4.143 8 C 0.349 3.651 9 O -0.414 6.414 10 N -0.366 5.366 11 C -0.027 4.027 12 C 0.295 3.705 13 O -0.409 6.409 14 N -0.361 5.361 15 C 0.040 3.960 16 H 0.125 0.875 17 C -0.219 4.219 18 C -0.170 4.170 19 C 0.061 3.939 20 H 0.064 0.936 21 C -0.226 4.226 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.085 0.915 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.733 3.267 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.251 0.749 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.231 0.769 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.216 0.784 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.999 12.893 15.371 21.248 hybrid contribution 0.393 0.219 -0.949 1.050 sum -6.606 13.112 14.422 20.581 Atomic orbital electron populations 1.21094 0.89966 1.03087 1.03620 1.20063 0.96929 0.91433 0.93938 1.21061 0.94285 0.97467 1.02462 1.21369 0.94285 0.98326 0.96867 1.21114 1.00384 0.92114 1.01682 1.21420 0.92989 0.99001 0.96288 1.19726 0.93628 0.92943 1.07955 1.18214 0.87000 0.83491 0.76364 1.90715 1.13538 1.87186 1.50010 1.45632 1.12161 1.04540 1.74300 1.21081 0.94427 0.82596 1.04582 1.20311 0.89403 0.84274 0.76554 1.90715 1.16910 1.84020 1.49235 1.45860 1.10867 1.05513 1.73818 1.21074 0.92906 0.85660 0.96364 0.87518 1.22181 1.00816 1.01726 0.97196 1.22173 1.00200 0.97090 0.97509 1.20231 0.90014 0.95307 0.88360 0.93635 1.22460 0.98816 1.00327 1.00994 1.42403 1.07243 1.59359 1.27203 1.19194 0.95271 1.21924 1.00127 0.91472 1.24689 0.95762 1.01004 0.99308 1.69655 1.00081 1.48402 1.39804 0.86201 0.77152 0.79984 0.83369 1.20684 1.21931 1.21943 0.90694 0.92474 0.88524 0.85406 0.85591 0.85294 0.85218 0.74859 0.88135 0.88495 0.76885 0.91638 0.92558 0.93074 0.91954 0.90536 0.94686 0.92895 0.93535 0.78363 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.74 36.01 0.31 -0.96 16 2 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 3 C -0.13 -1.22 9.66 -39.64 -0.38 -1.60 16 4 C -0.09 -0.75 10.04 -39.49 -0.40 -1.15 16 5 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 6 C -0.08 -0.83 9.53 -39.18 -0.37 -1.21 16 7 C -0.14 -1.69 5.87 -104.97 -0.62 -2.31 16 8 C 0.56 7.60 7.70 -12.33 -0.09 7.50 16 9 O -0.54 -8.11 13.34 5.32 0.07 -8.04 16 10 N -0.71 -9.27 5.48 -62.43 -0.34 -9.61 16 11 C 0.10 1.23 6.15 -5.19 -0.03 1.20 16 12 C 0.51 7.56 7.86 -10.98 -0.09 7.47 16 13 O -0.53 -9.95 15.33 5.56 0.09 -9.86 16 14 N -0.71 -9.39 4.45 -53.81 -0.24 -9.63 16 15 C 0.14 2.17 2.52 -67.93 -0.17 2.00 16 16 H 0.11 2.16 7.06 -51.92 -0.37 1.79 16 17 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 18 C -0.13 -1.89 4.29 -26.73 -0.11 -2.00 16 19 C 0.17 3.12 2.84 -67.93 -0.19 2.93 16 20 H 0.05 0.85 7.56 -51.93 -0.39 0.45 16 21 C -0.17 -2.83 9.49 37.16 0.35 -2.48 16 22 N -0.72 -17.25 4.49 -53.43 -0.24 -17.49 16 23 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 27 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 30 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.10 1.21 5.85 -51.93 -0.30 0.91 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.27 6.45 -52.49 -0.34 0.93 16 38 H 0.41 5.39 5.51 -40.82 -0.22 5.16 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 51 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 419.31 15.07 6.32 6.32 Total: -1.00 -33.94 419.31 -9.52 -43.47 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -8.18 Total: 16.30 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.70 Total: -1.78 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.10 Total: -64.16 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.16 Total: -17.90 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.94 -9.52 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136127600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.232 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds