Wall clock time and date at job start Wed Apr 1 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 120.07546 * 2 1 4 4 C 1.38338 * 120.14805 * 179.97438 * 3 2 1 5 5 C 1.38388 * 120.28965 * 0.02990 * 4 3 2 6 6 C 1.37933 * 120.14555 * 359.73807 * 5 4 3 7 7 C 1.39557 * 120.07247 * 179.97438 * 2 1 3 8 8 C 1.47844 * 120.14503 * 359.97438 * 7 2 1 9 9 O 1.21548 * 120.00259 * 353.99446 * 8 7 2 10 10 N 1.34781 * 120.00079 * 173.98562 * 8 7 2 11 11 C 1.46500 * 119.99926 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46812 * 180.02562 * 11 10 8 13 13 O 1.21274 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99878 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99914 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.47345 * 324.99754 * 15 14 12 17 17 C 1.53000 * 109.47455 * 85.00003 * 15 14 12 18 18 C 1.53001 * 109.47060 * 205.00319 * 15 14 12 19 19 C 1.52995 * 109.47072 * 64.99970 * 18 15 14 20 20 H 1.09006 * 109.47472 * 304.99914 * 19 18 15 21 21 C 1.53007 * 109.47149 * 185.00164 * 19 18 15 22 22 N 1.46496 * 109.47495 * 65.00066 * 19 18 15 23 23 C 1.36933 * 120.00249 * 204.72235 * 22 19 18 24 24 H 1.08000 * 119.99962 * 0.27947 * 23 22 19 25 25 C 1.38811 * 119.99986 * 180.27503 * 23 22 19 26 26 N 1.31616 * 120.00204 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99894 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47133 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46717 * 119.99879 * 27 25 23 30 30 H 1.48498 * 109.47072 * 239.99794 * 27 25 23 31 31 H 1.09005 * 109.46691 * 263.47303 * 1 2 3 32 32 H 1.08996 * 109.46924 * 23.47253 * 1 2 3 33 33 H 1.08997 * 109.47290 * 143.47345 * 1 2 3 34 34 H 1.08002 * 119.92827 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.85303 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.92331 * 179.97438 * 5 4 3 37 37 H 1.07996 * 120.07429 * 180.27210 * 6 5 4 38 38 H 0.97006 * 119.99674 * 0.02562 * 10 8 7 39 39 H 1.08991 * 109.46918 * 60.00925 * 11 10 8 40 40 H 1.08997 * 109.47193 * 300.00125 * 11 10 8 41 41 H 0.96994 * 119.99617 * 0.02562 * 14 12 11 42 42 H 1.08995 * 109.47399 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47110 * 300.00198 * 17 15 14 44 44 H 1.08998 * 109.46593 * 59.99885 * 17 15 14 45 45 H 1.09001 * 109.46973 * 304.99899 * 18 15 14 46 46 H 1.09001 * 109.47365 * 184.99777 * 18 15 14 47 47 H 1.08997 * 109.47150 * 59.99919 * 21 19 18 48 48 H 1.09000 * 109.47265 * 180.02562 * 21 19 18 49 49 H 1.08997 * 109.46990 * 300.00203 * 21 19 18 50 50 H 0.97000 * 119.99603 * 25.00295 * 22 19 18 51 51 H 0.97005 * 120.00215 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0017 0.0004 6 6 3.6023 -1.1989 0.0053 7 6 2.2063 -1.2077 0.0005 8 6 1.4720 -2.4909 0.0017 9 8 0.2615 -2.4983 0.1123 10 7 2.1446 -3.6525 -0.1201 11 6 1.4170 -4.9240 -0.1184 12 6 2.3939 -6.0619 -0.2664 13 8 3.5809 -5.8333 -0.3632 14 7 1.9484 -7.3338 -0.2901 15 6 2.8980 -8.4399 -0.4333 16 1 3.7162 -8.1343 -1.0856 17 6 3.4548 -8.8155 0.9414 18 6 2.1847 -9.6488 -1.0423 19 6 1.7369 -9.3127 -2.4662 20 1 1.1264 -8.4098 -2.4516 21 6 0.9160 -10.4743 -3.0302 22 7 2.9145 -9.0924 -3.3093 23 6 2.8172 -8.3136 -4.4314 24 1 1.8733 -7.8581 -4.6924 25 6 3.9316 -8.1095 -5.2334 26 7 5.0818 -8.6649 -4.9156 27 14 3.7990 -7.0465 -6.7638 28 1 2.4087 -6.5420 -6.8972 29 1 4.7332 -5.8976 -6.6509 30 1 4.1499 -7.8542 -7.9595 31 1 -0.3633 -0.1168 1.0211 32 1 -0.3633 0.9426 -0.4093 33 1 -0.3634 -0.8258 -0.6116 34 1 1.6585 2.1293 -0.0004 35 1 4.1182 2.1331 0.0010 36 1 5.3613 0.0099 0.0005 37 1 4.1493 -2.1301 0.0096 38 1 3.1107 -3.6465 -0.2081 39 1 0.7116 -4.9400 -0.9491 40 1 0.8747 -5.0310 0.8210 41 1 0.9990 -7.5165 -0.2122 42 1 4.1610 -9.6388 0.8348 43 1 3.9629 -7.9543 1.3752 44 1 2.6367 -9.1211 1.5935 45 1 1.3135 -9.8995 -0.4371 46 1 2.8667 -10.4987 -1.0670 47 1 0.0398 -10.6382 -2.4029 48 1 0.5974 -10.2350 -4.0447 49 1 1.5264 -11.3771 -3.0448 50 1 3.7622 -9.5015 -3.0749 51 1 5.8607 -8.5220 -5.4758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136127600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:52 Heat of formation + Delta-G solvation = -67.585540 kcal Electronic energy + Delta-G solvation = -30458.339847 eV Core-core repulsion = 26356.562338 eV Total energy + Delta-G solvation = -4101.777509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61988 -40.80344 -39.27155 -38.35344 -36.19921 -35.68789 -34.04541 -33.52247 -32.66349 -31.97966 -30.43187 -28.90329 -27.69782 -27.53775 -25.66503 -24.66134 -22.95351 -22.28266 -21.62925 -21.59070 -21.18849 -19.45091 -19.14932 -17.71838 -17.52510 -17.05863 -16.93148 -16.64492 -16.45188 -15.99972 -15.84542 -15.72990 -15.59228 -15.38932 -14.81685 -14.54779 -14.45695 -14.26311 -14.12187 -14.06091 -13.66389 -13.53659 -13.34287 -13.16327 -13.06008 -12.96664 -12.95489 -12.81393 -12.68525 -12.66301 -12.24611 -12.15613 -12.03651 -11.82436 -11.55740 -11.41414 -11.02071 -10.91857 -10.78168 -10.37377 -10.03151 -9.93653 -9.68192 -8.94500 -7.92512 -5.17392 -0.16802 0.36826 1.41955 1.43383 1.51539 1.54572 1.76106 1.80234 2.42342 2.55439 2.82584 3.42216 3.56020 3.70309 3.83101 3.86719 3.88249 4.02711 4.13582 4.14316 4.28031 4.31597 4.38904 4.42272 4.47322 4.56062 4.70073 4.72915 4.80654 4.81020 4.83338 4.84779 4.94925 4.97761 5.03722 5.10281 5.11652 5.23936 5.31275 5.36165 5.38052 5.42693 5.47586 5.51605 5.57575 5.62320 5.65193 5.94098 6.31122 6.34754 6.53234 7.03626 7.23413 7.37033 8.17436 8.36888 9.31352 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.002766 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.000076 B =10119.365179 C =11585.885643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 C -0.135 4.135 4 C -0.084 4.084 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.165 4.165 8 C 0.558 3.442 9 O -0.557 6.557 10 N -0.714 5.714 11 C 0.107 3.893 12 C 0.506 3.494 13 O -0.577 6.577 14 N -0.698 5.698 15 C 0.147 3.853 16 H 0.050 0.950 17 C -0.151 4.151 18 C -0.118 4.118 19 C 0.162 3.838 20 H 0.045 0.955 21 C -0.157 4.157 22 N -0.731 5.731 23 C -0.223 4.223 24 H 0.069 0.931 25 C -0.077 4.077 26 N -0.968 5.968 27 Si 0.958 3.042 28 H -0.269 1.269 29 H -0.300 1.300 30 H -0.293 1.293 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.411 0.589 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.416 0.584 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.028 0.972 49 H 0.041 0.959 50 H 0.370 0.630 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 13.626 16.786 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.157 4.157 6 C -0.110 4.110 7 C -0.168 4.168 8 C 0.347 3.653 9 O -0.438 6.438 10 N -0.369 5.369 11 C -0.020 4.020 12 C 0.293 3.707 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.043 3.957 16 H 0.068 0.932 17 C -0.209 4.209 18 C -0.156 4.156 19 C 0.054 3.946 20 H 0.063 0.937 21 C -0.217 4.217 22 N -0.371 5.371 23 C -0.355 4.355 24 H 0.087 0.913 25 C -0.269 4.269 26 N -0.619 5.619 27 Si 0.789 3.211 28 H -0.193 1.193 29 H -0.228 1.228 30 H -0.220 1.220 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.249 0.751 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.202 0.798 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.775 13.822 16.669 23.365 hybrid contribution 0.866 -0.064 -1.284 1.550 sum -7.909 13.758 15.385 22.103 Atomic orbital electron populations 1.21008 0.89915 1.03220 1.03086 1.20289 0.97269 0.91939 0.94613 1.21394 0.94860 0.97627 1.01349 1.21784 0.94201 0.99304 0.94910 1.21445 1.01572 0.91824 1.00885 1.21535 0.92628 0.99920 0.96869 1.19786 0.94300 0.92650 1.10029 1.18524 0.86877 0.84040 0.75814 1.90695 1.14321 1.87546 1.51250 1.45709 1.12150 1.04832 1.74192 1.21121 0.93588 0.81349 1.05954 1.20753 0.89136 0.85185 0.75672 1.90698 1.18965 1.84714 1.51340 1.45743 1.11661 1.04723 1.72818 1.20857 0.91862 0.86221 0.96783 0.93213 1.22078 1.01749 1.01177 0.95919 1.22079 1.01779 0.96447 0.95328 1.20544 0.88291 0.95930 0.89813 0.93727 1.22318 0.99972 0.99087 1.00325 1.42603 1.08601 1.58772 1.27126 1.19518 0.94849 1.20675 1.00473 0.91317 1.25386 0.95861 1.03220 1.02398 1.69796 1.00583 1.50566 1.40985 0.85287 0.77342 0.78169 0.80350 1.19319 1.22811 1.22011 0.90969 0.90272 0.90950 0.82801 0.82360 0.83259 0.85358 0.75053 0.87790 0.86001 0.74716 0.91289 0.94152 0.89932 0.87413 0.90592 0.90486 0.95295 0.93981 0.79825 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.74 71.24 0.62 -1.77 16 2 C -0.04 -0.87 5.91 -19.61 -0.12 -0.98 16 3 C -0.13 -2.15 9.66 22.23 0.21 -1.93 16 4 C -0.08 -1.18 10.04 22.33 0.22 -0.96 16 5 C -0.14 -2.33 10.03 22.23 0.22 -2.11 16 6 C -0.09 -1.95 9.53 22.53 0.21 -1.73 16 7 C -0.16 -4.05 5.87 -20.09 -0.12 -4.17 16 8 C 0.56 15.52 7.70 86.79 0.67 16.19 16 9 O -0.56 -17.23 13.34 -3.87 -0.05 -17.28 16 10 N -0.71 -19.17 5.48 -469.71 -2.57 -21.75 16 11 C 0.11 2.59 6.15 85.63 0.53 3.12 16 12 C 0.51 15.12 7.86 87.66 0.69 15.81 16 13 O -0.58 -22.54 15.33 -3.01 -0.05 -22.59 16 14 N -0.70 -17.69 4.45 -442.53 -1.97 -19.66 16 15 C 0.15 4.36 2.52 44.99 0.11 4.47 16 16 H 0.05 2.09 7.06 -2.38 -0.02 2.07 16 17 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 18 C -0.12 -3.13 4.29 30.59 0.13 -3.00 16 19 C 0.16 5.70 2.84 44.99 0.13 5.83 16 20 H 0.04 1.58 7.56 -2.38 -0.02 1.57 16 21 C -0.16 -5.01 9.49 71.98 0.68 -4.32 16 22 N -0.73 -35.45 4.49 -322.94 -1.45 -36.91 16 23 C -0.22 -12.34 9.93 84.03 0.83 -11.51 16 24 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 26 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 27 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 28 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 29 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 30 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 33 H 0.07 1.86 5.85 -2.39 -0.01 1.85 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.13 2.66 6.45 -2.91 -0.02 2.64 16 38 H 0.41 11.34 5.51 -92.70 -0.51 10.83 16 39 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.42 7.39 8.60 -92.71 -0.80 6.59 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.37 19.68 7.80 -92.71 -0.72 18.96 16 51 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -77.45 419.31 1.33 -76.12 By element: Atomic # 1 Polarization: 47.54 SS G_CDS: -1.08 Total: 46.46 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.19 Total: 5.94 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -5.71 Total: -138.48 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.10 Total: -39.87 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -77.45 1.33 -76.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136127600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.532 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds