Wall clock time and date at job start Wed Apr 1 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 120.07464 * 2 1 4 4 C 1.38337 * 120.14633 * 179.97438 * 3 2 1 5 5 C 1.38379 * 120.29378 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.14069 * 359.74493 * 5 4 3 7 7 C 1.39553 * 120.07315 * 179.97438 * 2 1 3 8 8 C 1.47854 * 120.14525 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99732 * 353.99056 * 8 7 2 10 10 N 1.34774 * 119.99637 * 173.98837 * 8 7 2 11 11 C 1.46502 * 119.99515 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46998 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00423 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00457 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47039 * 325.00288 * 15 14 12 17 17 C 1.52999 * 109.47106 * 84.99641 * 15 14 12 18 18 C 1.52995 * 109.47647 * 205.00162 * 15 14 12 19 19 C 1.53007 * 109.47157 * 64.99794 * 18 15 14 20 20 H 1.09001 * 109.46918 * 55.00248 * 19 18 15 21 21 C 1.52996 * 109.46965 * 175.00285 * 19 18 15 22 22 N 1.46499 * 109.47122 * 295.00131 * 19 18 15 23 23 C 1.36936 * 119.99899 * 154.99545 * 22 19 18 24 24 H 1.07992 * 120.00212 * 0.02562 * 23 22 19 25 25 C 1.38813 * 119.99558 * 179.97438 * 23 22 19 26 26 N 1.31619 * 120.00526 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99486 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47284 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47286 * 120.00268 * 27 25 23 30 30 H 1.48506 * 109.46977 * 240.00212 * 27 25 23 31 31 H 1.09004 * 109.47420 * 263.47729 * 1 2 3 32 32 H 1.08997 * 109.47525 * 23.47714 * 1 2 3 33 33 H 1.08998 * 109.47091 * 143.47933 * 1 2 3 34 34 H 1.07998 * 119.92692 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.85330 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.93005 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.06955 * 180.27487 * 6 5 4 38 38 H 0.96996 * 120.00281 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47227 * 60.00224 * 11 10 8 40 40 H 1.08995 * 109.47432 * 299.99877 * 11 10 8 41 41 H 0.97005 * 120.00046 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.47076 * 60.00720 * 17 15 14 43 43 H 1.09002 * 109.47383 * 179.97438 * 17 15 14 44 44 H 1.08993 * 109.47516 * 300.00838 * 17 15 14 45 45 H 1.09004 * 109.47175 * 304.99921 * 18 15 14 46 46 H 1.08997 * 109.47785 * 185.00009 * 18 15 14 47 47 H 1.09002 * 109.47140 * 299.99848 * 21 19 18 48 48 H 1.09001 * 109.47333 * 60.00217 * 21 19 18 49 49 H 1.08997 * 109.47112 * 179.97438 * 21 19 18 50 50 H 0.97007 * 119.99649 * 335.00415 * 22 19 18 51 51 H 0.96996 * 119.99790 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0053 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4909 0.0017 9 8 0.2615 -2.4983 0.1124 10 7 2.1447 -3.6524 -0.1200 11 6 1.4170 -4.9239 -0.1195 12 6 2.3937 -6.0618 -0.2684 13 8 3.5809 -5.8333 -0.3650 14 7 1.9480 -7.3334 -0.2942 15 6 2.8976 -8.4397 -0.4384 16 1 3.7162 -8.1332 -1.0896 17 6 3.4533 -8.8172 0.9361 18 6 2.1846 -9.6475 -1.0496 19 6 1.7378 -9.3094 -2.4734 20 1 2.5970 -8.9726 -3.0534 21 6 1.1366 -10.5545 -3.1284 22 7 0.7309 -8.2462 -2.4297 23 6 0.5512 -7.4285 -3.5133 24 1 1.1514 -7.5676 -4.4002 25 6 -0.4033 -6.4214 -3.4720 26 7 -1.1352 -6.2521 -2.3913 27 14 -0.6489 -5.3064 -4.9506 28 1 0.2916 -5.7009 -6.0298 29 1 -2.0454 -5.4330 -5.4395 30 1 -0.3878 -3.8983 -4.5574 31 1 -0.3634 -0.1167 1.0210 32 1 -0.3634 0.9425 -0.4094 33 1 -0.3633 -0.8259 -0.6116 34 1 1.6585 2.1293 -0.0004 35 1 4.1182 2.1331 0.0010 36 1 5.3612 0.0100 0.0005 37 1 4.1493 -2.1300 0.0098 38 1 3.1106 -3.6465 -0.2080 39 1 0.7121 -4.9395 -0.9508 40 1 0.8739 -5.0313 0.8194 41 1 0.9985 -7.5163 -0.2174 42 1 2.6347 -9.1237 1.5873 43 1 4.1595 -9.6406 0.8289 44 1 3.9612 -7.9568 1.3716 45 1 1.3129 -9.8990 -0.4453 46 1 2.8664 -10.4975 -1.0750 47 1 1.8858 -11.3456 -3.1609 48 1 0.2774 -10.8913 -2.5484 49 1 0.8179 -10.3135 -4.1425 50 1 0.1916 -8.1214 -1.6331 51 1 -1.8018 -5.5481 -2.3624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136127601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:57 Heat of formation + Delta-G solvation = -37.816099 kcal Electronic energy + Delta-G solvation = -31454.518470 eV Core-core repulsion = 27354.031861 eV Total energy + Delta-G solvation = -4100.486609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31609 -39.40997 -38.09080 -36.88512 -34.54262 -34.04781 -32.52268 -32.34219 -31.43729 -30.68898 -28.62286 -27.59853 -26.55960 -26.29257 -23.68107 -23.58123 -21.79289 -21.08304 -20.30517 -20.27190 -19.64768 -18.04679 -17.20096 -16.28191 -16.17213 -15.81027 -15.48032 -15.35052 -14.96437 -14.69708 -14.61757 -14.36833 -13.86756 -13.72016 -13.50142 -13.32941 -13.15947 -13.00908 -12.76799 -12.60656 -12.24626 -12.07459 -12.03648 -11.98570 -11.80563 -11.75350 -11.73570 -11.66829 -11.13904 -11.02786 -10.85481 -10.75099 -10.41260 -10.23456 -9.91701 -9.69919 -9.42995 -9.38898 -9.08971 -9.00537 -8.85623 -8.63286 -8.45391 -6.96802 -5.81660 -3.08266 0.85343 1.27332 3.00789 3.12484 3.23369 3.43218 3.49806 3.52762 3.84929 3.93158 4.58330 4.70655 4.76779 4.80248 4.97370 5.02412 5.21813 5.24694 5.37344 5.40098 5.48902 5.53338 5.61048 5.63775 5.76648 5.80449 5.84875 5.86484 5.91650 5.92298 5.97574 6.10661 6.20439 6.21342 6.27965 6.30827 6.32930 6.33810 6.38233 6.51142 6.54537 6.57573 6.70734 6.82959 6.84103 7.01559 7.08906 7.69961 7.77731 8.04774 8.37460 8.47723 8.72710 9.49545 10.02303 10.37881 11.40586 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003428 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.053150 B = 8166.941495 C = 9872.852265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.081 4.081 7 C -0.133 4.133 8 C 0.554 3.446 9 O -0.526 6.526 10 N -0.709 5.709 11 C 0.095 3.905 12 C 0.526 3.474 13 O -0.567 6.567 14 N -0.689 5.689 15 C 0.150 3.850 16 H 0.083 0.917 17 C -0.162 4.162 18 C -0.134 4.134 19 C 0.169 3.831 20 H 0.047 0.953 21 C -0.164 4.164 22 N -0.717 5.717 23 C -0.232 4.232 24 H 0.067 0.933 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.896 3.104 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.406 0.594 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.408 0.592 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.045 0.955 49 H 0.052 0.948 50 H 0.377 0.623 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 5.722 8.569 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.100 4.100 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.405 6.405 10 N -0.364 5.364 11 C -0.031 4.031 12 C 0.313 3.687 13 O -0.448 6.448 14 N -0.341 5.341 15 C 0.046 3.954 16 H 0.102 0.898 17 C -0.221 4.221 18 C -0.173 4.173 19 C 0.059 3.941 20 H 0.065 0.935 21 C -0.224 4.224 22 N -0.360 5.360 23 C -0.363 4.363 24 H 0.085 0.915 25 C -0.204 4.204 26 N -0.580 5.580 27 Si 0.728 3.272 28 H -0.209 1.209 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.244 0.756 39 H 0.147 0.853 40 H 0.108 0.892 41 H 0.246 0.754 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.212 0.788 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.100 5.899 8.412 13.724 hybrid contribution -0.339 0.517 -0.744 0.968 sum 8.761 6.416 7.667 13.293 Atomic orbital electron populations 1.21114 0.89918 1.03160 1.03739 1.20092 0.97028 0.91442 0.93805 1.21046 0.94253 0.97433 1.02523 1.21313 0.94269 0.98183 0.97534 1.21061 1.00113 0.92173 1.02161 1.21394 0.93058 0.98816 0.96695 1.19845 0.93621 0.93280 1.06876 1.18179 0.87148 0.83454 0.77115 1.90751 1.13379 1.86989 1.49337 1.45592 1.11630 1.04988 1.74159 1.21240 0.94577 0.81384 1.05899 1.20243 0.88769 0.84506 0.75231 1.90587 1.17294 1.84598 1.52305 1.45856 1.11281 1.04720 1.72287 1.20823 0.92375 0.86382 0.95869 0.89849 1.22206 1.00857 1.01418 0.97584 1.22215 1.00276 0.96578 0.98186 1.20283 0.92428 0.88927 0.92431 0.93455 1.22422 0.99914 0.98350 1.01704 1.42460 1.41827 1.34771 1.16960 1.19213 1.15249 1.07976 0.93840 0.91471 1.24579 0.99062 0.99406 0.97329 1.69550 1.26142 1.35179 1.27082 0.86278 0.77400 0.81015 0.82494 1.20877 1.21970 1.21861 0.90654 0.92605 0.88240 0.85523 0.85782 0.85539 0.85354 0.75611 0.85259 0.89209 0.75386 0.92741 0.92081 0.92452 0.91649 0.90775 0.94616 0.93589 0.92869 0.78759 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.74 36.01 0.31 -1.39 16 2 C -0.02 -0.31 5.91 -104.23 -0.62 -0.93 16 3 C -0.13 -1.49 9.66 -39.64 -0.38 -1.88 16 4 C -0.09 -0.94 10.04 -39.49 -0.40 -1.33 16 5 C -0.14 -1.43 10.03 -39.64 -0.40 -1.83 16 6 C -0.08 -1.01 9.53 -39.18 -0.37 -1.39 16 7 C -0.13 -2.00 5.87 -104.97 -0.62 -2.61 16 8 C 0.55 9.83 7.70 -12.33 -0.09 9.73 16 9 O -0.53 -10.71 13.34 5.32 0.07 -10.64 16 10 N -0.71 -12.22 5.48 -62.43 -0.34 -12.56 16 11 C 0.10 1.77 6.15 -5.19 -0.03 1.74 16 12 C 0.53 9.74 7.86 -10.99 -0.09 9.66 16 13 O -0.57 -11.29 15.33 5.56 0.09 -11.21 16 14 N -0.69 -11.66 3.80 -53.81 -0.20 -11.87 16 15 C 0.15 2.27 2.57 -67.94 -0.17 2.10 16 16 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 17 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 18 C -0.13 -1.91 4.43 -26.73 -0.12 -2.02 16 19 C 0.17 3.03 2.89 -67.93 -0.20 2.84 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 22 N -0.72 -15.65 3.84 -53.43 -0.21 -15.86 16 23 C -0.23 -5.92 9.93 -15.06 -0.15 -6.07 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -25.14 12.78 55.49 0.71 -24.43 16 27 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.10 1.68 5.85 -51.93 -0.30 1.37 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.46 6.46 -52.49 -0.34 1.12 16 38 H 0.41 6.48 5.51 -40.82 -0.22 6.25 16 39 H 0.13 2.88 7.87 -51.93 -0.41 2.48 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.41 7.08 6.51 -40.82 -0.27 6.81 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.38 8.43 5.70 -40.82 -0.23 8.20 16 51 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -29.84 414.57 -9.42 -39.26 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -8.05 Total: 21.68 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.71 Total: 2.22 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.04 Total: -64.71 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.16 Total: -21.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.84 -9.42 -39.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136127601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.446 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds