Wall clock time and date at job start Wed Apr 1 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 120.07464 * 2 1 4 4 C 1.38337 * 120.14633 * 179.97438 * 3 2 1 5 5 C 1.38379 * 120.29378 * 0.02562 * 4 3 2 6 6 C 1.37942 * 120.14069 * 359.74493 * 5 4 3 7 7 C 1.39553 * 120.07315 * 179.97438 * 2 1 3 8 8 C 1.47854 * 120.14525 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99732 * 353.99056 * 8 7 2 10 10 N 1.34774 * 119.99637 * 173.98837 * 8 7 2 11 11 C 1.46502 * 119.99515 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46998 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00423 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00089 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00457 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.47039 * 325.00288 * 15 14 12 17 17 C 1.52999 * 109.47106 * 84.99641 * 15 14 12 18 18 C 1.52995 * 109.47647 * 205.00162 * 15 14 12 19 19 C 1.53007 * 109.47157 * 64.99794 * 18 15 14 20 20 H 1.09001 * 109.46918 * 55.00248 * 19 18 15 21 21 C 1.52996 * 109.46965 * 175.00285 * 19 18 15 22 22 N 1.46499 * 109.47122 * 295.00131 * 19 18 15 23 23 C 1.36936 * 119.99899 * 154.99545 * 22 19 18 24 24 H 1.07992 * 120.00212 * 0.02562 * 23 22 19 25 25 C 1.38813 * 119.99558 * 179.97438 * 23 22 19 26 26 N 1.31619 * 120.00526 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99486 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47284 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47286 * 120.00268 * 27 25 23 30 30 H 1.48506 * 109.46977 * 240.00212 * 27 25 23 31 31 H 1.09004 * 109.47420 * 263.47729 * 1 2 3 32 32 H 1.08997 * 109.47525 * 23.47714 * 1 2 3 33 33 H 1.08998 * 109.47091 * 143.47933 * 1 2 3 34 34 H 1.07998 * 119.92692 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.85330 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.93005 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.06955 * 180.27487 * 6 5 4 38 38 H 0.96996 * 120.00281 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47227 * 60.00224 * 11 10 8 40 40 H 1.08995 * 109.47432 * 299.99877 * 11 10 8 41 41 H 0.97005 * 120.00046 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.47076 * 60.00720 * 17 15 14 43 43 H 1.09002 * 109.47383 * 179.97438 * 17 15 14 44 44 H 1.08993 * 109.47516 * 300.00838 * 17 15 14 45 45 H 1.09004 * 109.47175 * 304.99921 * 18 15 14 46 46 H 1.08997 * 109.47785 * 185.00009 * 18 15 14 47 47 H 1.09002 * 109.47140 * 299.99848 * 21 19 18 48 48 H 1.09001 * 109.47333 * 60.00217 * 21 19 18 49 49 H 1.08997 * 109.47112 * 179.97438 * 21 19 18 50 50 H 0.97007 * 119.99649 * 335.00415 * 22 19 18 51 51 H 0.96996 * 119.99790 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0005 6 6 3.6022 -1.1989 0.0053 7 6 2.2063 -1.2077 0.0005 8 6 1.4719 -2.4909 0.0017 9 8 0.2615 -2.4983 0.1124 10 7 2.1447 -3.6524 -0.1200 11 6 1.4170 -4.9239 -0.1195 12 6 2.3937 -6.0618 -0.2684 13 8 3.5809 -5.8333 -0.3650 14 7 1.9480 -7.3334 -0.2942 15 6 2.8976 -8.4397 -0.4384 16 1 3.7162 -8.1332 -1.0896 17 6 3.4533 -8.8172 0.9361 18 6 2.1846 -9.6475 -1.0496 19 6 1.7378 -9.3094 -2.4734 20 1 2.5970 -8.9726 -3.0534 21 6 1.1366 -10.5545 -3.1284 22 7 0.7309 -8.2462 -2.4297 23 6 0.5512 -7.4285 -3.5133 24 1 1.1514 -7.5676 -4.4002 25 6 -0.4033 -6.4214 -3.4720 26 7 -1.1352 -6.2521 -2.3913 27 14 -0.6489 -5.3064 -4.9506 28 1 0.2916 -5.7009 -6.0298 29 1 -2.0454 -5.4330 -5.4395 30 1 -0.3878 -3.8983 -4.5574 31 1 -0.3634 -0.1167 1.0210 32 1 -0.3634 0.9425 -0.4094 33 1 -0.3633 -0.8259 -0.6116 34 1 1.6585 2.1293 -0.0004 35 1 4.1182 2.1331 0.0010 36 1 5.3612 0.0100 0.0005 37 1 4.1493 -2.1300 0.0098 38 1 3.1106 -3.6465 -0.2080 39 1 0.7121 -4.9395 -0.9508 40 1 0.8739 -5.0313 0.8194 41 1 0.9985 -7.5163 -0.2174 42 1 2.6347 -9.1237 1.5873 43 1 4.1595 -9.6406 0.8289 44 1 3.9612 -7.9568 1.3716 45 1 1.3129 -9.8990 -0.4453 46 1 2.8664 -10.4975 -1.0750 47 1 1.8858 -11.3456 -3.1609 48 1 0.2774 -10.8913 -2.5484 49 1 0.8179 -10.3135 -4.1425 50 1 0.1916 -8.1214 -1.6331 51 1 -1.8018 -5.5481 -2.3624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136127601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:56 Heat of formation + Delta-G solvation = -55.933764 kcal Electronic energy + Delta-G solvation = -31455.304111 eV Core-core repulsion = 27354.031861 eV Total energy + Delta-G solvation = -4101.272250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57759 -40.75662 -39.25750 -38.35453 -36.04588 -35.54561 -34.08184 -33.52418 -32.60003 -32.00339 -30.30367 -28.82833 -27.70021 -27.52126 -25.58550 -24.64569 -22.92499 -22.22532 -21.71331 -21.59170 -21.10248 -19.25927 -19.11487 -17.68395 -17.41635 -17.05555 -16.80736 -16.64913 -16.47782 -15.96839 -15.85654 -15.67662 -15.51869 -15.35577 -14.76639 -14.52119 -14.35987 -14.20461 -14.07055 -13.99630 -13.63248 -13.51891 -13.30951 -13.18431 -13.06338 -12.96491 -12.93637 -12.79901 -12.68144 -12.60440 -12.29696 -12.14302 -12.03509 -11.71440 -11.61595 -11.40096 -10.92164 -10.91444 -10.75753 -10.32199 -9.94982 -9.87900 -9.68148 -8.84341 -7.89088 -5.10333 -0.15404 0.37131 1.39365 1.44578 1.49280 1.61328 1.81362 1.87571 2.54371 2.58170 2.83529 3.46022 3.61570 3.71025 3.83307 3.87673 3.91490 4.06636 4.13864 4.18002 4.30823 4.38500 4.39730 4.47720 4.58011 4.66753 4.70407 4.71841 4.78017 4.80603 4.85185 4.88989 4.92885 4.97873 5.08168 5.12806 5.14922 5.17127 5.32076 5.36643 5.38670 5.43097 5.46757 5.58338 5.59463 5.63652 5.73143 5.95083 6.33135 6.42467 6.59714 7.11058 7.25660 7.43380 8.17469 8.42954 9.31367 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.003428 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.053150 B = 8166.941495 C = 9872.852265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 C -0.133 4.133 4 C -0.082 4.082 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.163 4.163 8 C 0.546 3.454 9 O -0.564 6.564 10 N -0.706 5.706 11 C 0.104 3.896 12 C 0.525 3.475 13 O -0.583 6.583 14 N -0.684 5.684 15 C 0.147 3.853 16 H 0.062 0.938 17 C -0.152 4.152 18 C -0.120 4.120 19 C 0.161 3.839 20 H 0.032 0.968 21 C -0.155 4.155 22 N -0.720 5.720 23 C -0.221 4.221 24 H 0.059 0.941 25 C -0.051 4.051 26 N -0.942 5.942 27 Si 0.934 3.066 28 H -0.276 1.276 29 H -0.296 1.296 30 H -0.309 1.309 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.412 0.588 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.406 0.594 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.028 0.972 50 H 0.375 0.625 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.535 5.749 9.322 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.045 4.045 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.166 4.166 8 C 0.336 3.664 9 O -0.444 6.444 10 N -0.360 5.360 11 C -0.024 4.024 12 C 0.311 3.689 13 O -0.465 6.465 14 N -0.335 5.335 15 C 0.043 3.957 16 H 0.080 0.920 17 C -0.210 4.210 18 C -0.159 4.159 19 C 0.053 3.947 20 H 0.050 0.950 21 C -0.215 4.215 22 N -0.363 5.363 23 C -0.354 4.354 24 H 0.077 0.923 25 C -0.245 4.245 26 N -0.592 5.592 27 Si 0.767 3.233 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.238 1.238 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.251 0.749 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.129 0.871 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.209 0.791 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.541 5.869 9.150 15.855 hybrid contribution -0.985 0.504 -1.007 1.496 sum 10.556 6.373 8.143 14.777 Atomic orbital electron populations 1.20985 0.90711 1.02837 1.02855 1.20257 0.96873 0.92304 0.95100 1.21371 0.95161 0.97174 1.01361 1.21805 0.93819 0.99578 0.94812 1.21474 1.01737 0.91387 1.00495 1.21540 0.92016 1.00306 0.96870 1.19785 0.94746 0.92030 1.10018 1.18818 0.87005 0.84508 0.76094 1.90728 1.15000 1.87601 1.51099 1.45574 1.11806 1.04592 1.74075 1.21007 0.94309 0.82408 1.04640 1.20188 0.88397 0.84985 0.75345 1.90565 1.17716 1.84896 1.53321 1.45934 1.11527 1.04763 1.71276 1.21000 0.91434 0.85947 0.97359 0.92010 1.22107 1.01591 1.01676 0.95621 1.22138 1.01312 0.97111 0.95308 1.20519 0.90877 0.88254 0.95058 0.94997 1.22280 1.00824 0.98436 0.99915 1.42546 1.42628 1.35353 1.15773 1.19325 1.13884 1.07748 0.94396 0.92300 1.24956 1.00056 1.00818 0.98649 1.69628 1.26603 1.35256 1.27760 0.85651 0.77069 0.79164 0.81369 1.20101 1.22380 1.23786 0.91125 0.90084 0.92038 0.82828 0.81845 0.82401 0.84967 0.74915 0.89076 0.88499 0.75607 0.91443 0.89454 0.93960 0.90569 0.87131 0.91162 0.93434 0.95321 0.79076 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 8.74 71.24 0.62 -2.79 16 2 C -0.04 -1.23 5.91 -19.61 -0.12 -1.35 16 3 C -0.13 -2.63 9.66 22.23 0.21 -2.42 16 4 C -0.08 -1.32 10.04 22.33 0.22 -1.09 16 5 C -0.13 -2.40 10.03 22.23 0.22 -2.18 16 6 C -0.09 -2.17 9.53 22.53 0.21 -1.96 16 7 C -0.16 -5.04 5.87 -20.09 -0.12 -5.15 16 8 C 0.55 20.79 7.70 86.79 0.67 21.46 16 9 O -0.56 -24.96 13.34 -3.87 -0.05 -25.01 16 10 N -0.71 -25.90 5.48 -469.70 -2.57 -28.47 16 11 C 0.10 4.09 6.15 85.63 0.53 4.62 16 12 C 0.52 20.04 7.86 87.66 0.69 20.73 16 13 O -0.58 -23.66 15.33 -3.04 -0.05 -23.70 16 14 N -0.68 -23.29 3.80 -442.55 -1.68 -24.97 16 15 C 0.15 4.22 2.57 44.99 0.12 4.34 16 16 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 17 C -0.15 -3.44 9.48 71.98 0.68 -2.76 16 18 C -0.12 -3.09 4.43 30.59 0.14 -2.96 16 19 C 0.16 5.57 2.89 44.99 0.13 5.70 16 20 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 21 C -0.15 -4.85 9.49 71.98 0.68 -4.17 16 22 N -0.72 -31.53 3.84 -322.94 -1.24 -32.77 16 23 C -0.22 -11.49 9.93 84.03 0.83 -10.65 16 24 H 0.06 3.13 7.83 -2.91 -0.02 3.11 16 25 C -0.05 -2.78 5.50 84.86 0.47 -2.31 16 26 N -0.94 -52.77 12.78 21.65 0.28 -52.49 16 27 Si 0.93 46.97 29.55 68.60 2.03 49.00 16 28 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 30 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.08 1.83 8.04 -2.39 -0.02 1.81 16 33 H 0.06 2.26 5.85 -2.39 -0.01 2.25 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.13 3.00 6.46 -2.91 -0.02 2.98 16 38 H 0.41 13.81 5.51 -92.71 -0.51 13.30 16 39 H 0.09 4.39 7.87 -2.39 -0.02 4.37 16 40 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 41 H 0.41 14.27 6.51 -92.70 -0.60 13.66 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.37 16.86 5.70 -92.70 -0.53 16.33 16 51 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -68.80 414.57 2.22 -66.58 By element: Atomic # 1 Polarization: 55.46 SS G_CDS: -0.69 Total: 54.77 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.20 Total: 17.08 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -5.22 Total: -138.70 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.10 Total: -48.72 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -68.80 2.22 -66.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136127601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.643 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds