Wall clock time and date at job start Wed Apr 1 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21287 * 120.00004 * 2 1 4 4 N 1.34778 * 119.99715 * 180.02562 * 2 1 3 5 5 C 1.39956 * 119.99777 * 175.15611 * 4 2 1 6 6 C 1.38989 * 119.99848 * 326.90658 * 5 4 2 7 7 C 1.38212 * 120.22380 * 180.02562 * 6 5 4 8 8 C 1.38017 * 120.21856 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00094 * 179.97438 * 8 7 6 10 10 C 1.39576 * 119.99827 * 359.97438 * 8 7 6 11 11 C 1.47866 * 120.10764 * 180.02562 * 10 8 7 12 12 O 1.21544 * 120.00370 * 354.18161 * 11 10 8 13 13 N 1.34777 * 119.99461 * 174.18197 * 11 10 8 14 14 C 1.46509 * 119.99723 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47000 * 325.00639 * 14 13 11 16 16 C 1.53000 * 109.46631 * 85.00309 * 14 13 11 17 17 C 1.52998 * 109.47171 * 204.99877 * 14 13 11 18 18 C 1.52999 * 109.46876 * 65.00273 * 17 14 13 19 19 H 1.09003 * 109.46984 * 304.99691 * 18 17 14 20 20 C 1.52999 * 109.46966 * 184.99888 * 18 17 14 21 21 N 1.46494 * 109.47085 * 64.99940 * 18 17 14 22 22 C 1.36939 * 119.99962 * 204.99787 * 21 18 17 23 23 H 1.08001 * 120.00086 * 0.02562 * 22 21 18 24 24 C 1.38817 * 119.99964 * 179.97438 * 22 21 18 25 25 N 1.31620 * 120.00068 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99944 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46828 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47025 * 119.99884 * 26 24 22 29 29 H 1.48495 * 109.47072 * 240.00127 * 26 24 22 30 30 C 1.38589 * 119.99931 * 147.18783 * 5 4 2 31 31 H 1.08996 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47044 * 300.00215 * 1 2 3 33 33 H 1.09001 * 109.46946 * 59.99733 * 1 2 3 34 34 H 0.96998 * 119.99968 * 355.14997 * 4 2 1 35 35 H 1.08004 * 119.88610 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.89119 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47210 * 263.41554 * 9 8 7 38 38 H 1.09004 * 109.46921 * 23.41497 * 9 8 7 39 39 H 1.08999 * 109.47553 * 143.40838 * 9 8 7 40 40 H 0.96998 * 120.00398 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.46838 * 180.02562 * 16 14 13 42 42 H 1.09005 * 109.47081 * 299.99765 * 16 14 13 43 43 H 1.08995 * 109.47611 * 60.00142 * 16 14 13 44 44 H 1.08998 * 109.47087 * 185.00036 * 17 14 13 45 45 H 1.09003 * 109.47125 * 305.00691 * 17 14 13 46 46 H 1.08990 * 109.47298 * 300.00057 * 20 18 17 47 47 H 1.09001 * 109.47295 * 60.00194 * 20 18 17 48 48 H 1.09004 * 109.46906 * 179.97438 * 20 18 17 49 49 H 0.97001 * 120.00471 * 25.00288 * 21 18 17 50 50 H 0.96994 * 119.99680 * 179.97438 * 25 24 22 51 51 H 1.08003 * 120.11476 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1694 -0.1029 6 6 4.2201 -0.1903 -0.8507 7 6 5.5983 -0.1883 -0.9554 8 6 6.3447 -1.1589 -0.3184 9 6 7.8471 -1.1523 -0.4363 10 6 5.7081 -2.1464 0.4350 11 6 6.5054 -3.1870 1.1190 12 8 7.7062 -3.2476 0.9409 13 7 5.9006 -4.0684 1.9398 14 6 6.6905 -5.0998 2.6171 15 1 7.4985 -5.4267 1.9627 16 6 7.2795 -4.5259 3.9072 17 6 5.7920 -6.2919 2.9528 18 6 5.3027 -6.9424 1.6573 19 1 4.8146 -6.1917 1.0357 20 6 4.3066 -8.0551 1.9900 21 7 6.4438 -7.5087 0.9339 22 6 6.3788 -7.6766 -0.4236 23 1 5.4865 -7.3912 -0.9610 24 6 7.4603 -8.2127 -1.1092 25 7 8.5479 -8.5601 -0.4544 26 14 7.3714 -8.4425 -2.9609 27 1 6.0501 -7.9778 -3.4545 28 1 8.4478 -7.6516 -3.6101 29 1 7.5459 -9.8799 -3.2903 30 6 4.3169 -2.1511 0.5367 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6985 -2.0058 0.0701 35 1 3.6412 0.5710 -1.3524 36 1 6.0927 0.5747 -1.5382 37 1 8.1527 -1.8390 -1.2257 38 1 8.1882 -0.1457 -0.6782 39 1 8.2873 -1.4674 0.5098 40 1 4.9423 -4.0199 2.0822 41 1 7.8675 -5.2931 4.4109 42 1 7.9196 -3.6766 3.6681 43 1 6.4715 -4.1990 4.5616 44 1 6.3571 -7.0204 3.5342 45 1 4.9355 -5.9492 3.5333 46 1 4.7946 -8.8056 2.6116 47 1 3.4576 -7.6338 2.5282 48 1 3.9577 -8.5182 1.0670 49 1 7.2453 -7.7647 1.4164 50 1 9.3034 -8.9350 -0.9334 51 1 3.8185 -2.9152 1.1149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146813724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:10 Heat of formation + Delta-G solvation = -41.894396 kcal Electronic energy + Delta-G solvation = -31181.633565 eV Core-core repulsion = 27080.970108 eV Total energy + Delta-G solvation = -4100.663457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88765 -39.86322 -38.25673 -36.78390 -35.23549 -34.46585 -32.46120 -31.89370 -31.63479 -30.08165 -29.76654 -28.57963 -26.41307 -26.22869 -24.06703 -23.57750 -22.08748 -21.81236 -20.61875 -20.06106 -19.69080 -18.21523 -17.51161 -17.14620 -16.32367 -15.90651 -15.79363 -15.46379 -14.96183 -14.73337 -14.61697 -14.38638 -13.89117 -13.79241 -13.72122 -13.60582 -13.25826 -13.07539 -12.91227 -12.81255 -12.63648 -12.28217 -12.15223 -12.06269 -11.90993 -11.75754 -11.72890 -11.54627 -11.46468 -11.02319 -10.82141 -10.60269 -10.48782 -10.40675 -10.20959 -10.19227 -9.87310 -9.60571 -9.27322 -9.05399 -8.86293 -8.67154 -8.14295 -6.89898 -5.70959 -2.98785 0.88430 1.11683 2.23023 2.72116 3.11077 3.44542 3.46715 3.51629 3.54257 3.88165 4.32329 4.63829 4.64357 4.70524 4.73781 4.94641 4.97220 5.11086 5.18354 5.23385 5.29101 5.41227 5.42741 5.49649 5.63203 5.65358 5.71275 5.82614 5.89629 5.95261 6.01182 6.01821 6.02696 6.03753 6.13893 6.24607 6.28830 6.36880 6.40002 6.44416 6.57087 6.61105 6.74101 6.82653 6.86929 6.95162 7.03606 7.07207 7.74233 7.74568 7.82224 8.47328 8.56949 9.58867 10.16056 10.50134 11.51836 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009193 B = 0.003099 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.060970 B = 9033.618557 C = 9171.419826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.529 6.529 4 N -0.672 5.672 5 C 0.125 3.875 6 C -0.094 4.094 7 C -0.113 4.113 8 C -0.034 4.034 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.558 3.442 12 O -0.520 6.520 13 N -0.712 5.712 14 C 0.144 3.856 15 H 0.107 0.893 16 C -0.161 4.161 17 C -0.131 4.131 18 C 0.172 3.828 19 H 0.045 0.955 20 C -0.165 4.165 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.901 3.099 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.293 1.293 30 C -0.106 4.106 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.412 0.588 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.033 0.967 48 H 0.052 0.948 49 H 0.383 0.617 50 H 0.253 0.747 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 15.962 5.697 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.405 6.405 4 N -0.318 5.318 5 C 0.031 3.969 6 C -0.115 4.115 7 C -0.132 4.132 8 C -0.035 4.035 9 C -0.177 4.177 10 C -0.116 4.116 11 C 0.345 3.655 12 O -0.397 6.397 13 N -0.363 5.363 14 C 0.040 3.960 15 H 0.125 0.875 16 C -0.219 4.219 17 C -0.170 4.170 18 C 0.062 3.938 19 H 0.063 0.937 20 C -0.226 4.226 21 N -0.361 5.361 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.733 3.267 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.220 1.220 30 C -0.127 4.127 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.217 0.783 50 H 0.063 0.937 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.915 16.667 5.389 22.371 hybrid contribution -0.698 -0.841 -0.829 1.372 sum -14.613 15.825 4.560 22.017 Atomic orbital electron populations 1.21860 0.90686 1.04697 1.05694 1.21019 0.90903 0.83139 0.75133 1.90750 1.70486 1.31247 1.48006 1.43672 1.05170 1.09967 1.72953 1.17507 0.82648 0.97920 0.98813 1.21242 0.94760 0.98396 0.97066 1.20934 0.93071 0.98957 1.00243 1.20085 0.97231 0.92546 0.93659 1.21090 0.90044 1.01174 1.05380 1.19669 0.92595 0.97682 1.01626 1.18069 0.87364 0.81217 0.78820 1.90747 1.14384 1.71627 1.62955 1.45896 1.11102 1.32185 1.47087 1.21046 0.95121 0.86258 0.93541 0.87475 1.22185 1.00690 1.01616 0.97423 1.22174 0.98988 0.96765 0.99055 1.20209 0.89585 0.93129 0.90873 0.93749 1.22463 0.98683 1.00598 1.00820 1.42392 1.14152 1.74805 1.04792 1.19181 0.99281 1.34278 0.83706 0.91529 1.24687 0.96374 1.02077 0.97616 1.69653 1.04978 1.48948 1.34319 0.86201 0.77148 0.77244 0.86100 1.20745 1.21890 1.21995 1.20965 0.92983 0.99277 0.99524 0.90186 0.88365 0.88300 0.75136 0.84650 0.85095 0.90374 0.92744 0.88502 0.77478 0.91718 0.92470 0.93220 0.90565 0.92165 0.93508 0.94805 0.92936 0.78332 0.93656 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.39 36.01 0.37 -0.34 16 2 C 0.51 4.49 7.68 -10.98 -0.08 4.40 16 3 O -0.53 -6.94 14.74 5.55 0.08 -6.85 16 4 N -0.67 -5.51 5.34 -9.89 -0.05 -5.57 16 5 C 0.12 1.42 6.28 -83.74 -0.53 0.89 16 6 C -0.09 -1.17 8.65 -39.31 -0.34 -1.51 16 7 C -0.11 -1.41 9.65 -39.67 -0.38 -1.79 16 8 C -0.03 -0.48 5.91 -104.20 -0.62 -1.09 16 9 C -0.12 -1.72 8.73 36.01 0.31 -1.40 16 10 C -0.11 -1.63 5.87 -104.99 -0.62 -2.25 16 11 C 0.56 9.40 7.67 -12.32 -0.09 9.31 16 12 O -0.52 -10.55 12.98 5.33 0.07 -10.48 16 13 N -0.71 -10.39 4.40 -54.74 -0.24 -10.63 16 14 C 0.14 2.30 2.52 -67.93 -0.17 2.13 16 15 H 0.11 2.25 7.05 -51.93 -0.37 1.88 16 16 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 17 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 18 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 19 H 0.04 0.84 7.56 -51.93 -0.39 0.44 16 20 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16 21 N -0.72 -17.41 4.49 -53.43 -0.24 -17.65 16 22 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 26 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 C -0.11 -1.25 9.44 -38.99 -0.37 -1.62 16 31 H 0.08 0.15 7.92 -51.93 -0.41 -0.26 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 2.04 8.66 -40.82 -0.35 1.69 16 35 H 0.14 1.66 6.37 -52.48 -0.33 1.33 16 36 H 0.13 1.33 8.05 -52.49 -0.42 0.91 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 39 H 0.10 1.55 5.83 -51.93 -0.30 1.25 16 40 H 0.39 4.54 6.67 -40.82 -0.27 4.27 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.13 1.18 6.45 -52.48 -0.34 0.84 16 LS Contribution 416.33 15.07 6.27 6.27 Total: -1.00 -35.68 416.33 -8.89 -44.57 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -8.13 Total: 13.75 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.36 Total: -3.64 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.19 Total: -61.47 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.15 Total: -17.34 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.68 -8.89 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146813724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.674 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds