Wall clock time and date at job start Wed Apr 1 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38099 * 120.04503 * 2 1 4 4 C 1.38288 * 120.07862 * 179.72097 * 3 2 1 5 5 C 1.38289 * 120.15557 * 0.30156 * 4 3 2 6 6 C 1.38096 * 120.07442 * 359.95125 * 5 4 3 7 7 C 1.50706 * 120.04090 * 180.02562 * 6 5 4 8 8 C 1.38930 * 119.92616 * 0.02562 * 6 5 4 9 9 N 1.39724 * 120.08163 * 179.97438 * 8 6 5 10 10 C 1.34771 * 119.99995 * 239.11947 * 9 8 6 11 11 O 1.21372 * 120.00488 * 2.39633 * 10 9 8 12 12 C 1.49362 * 119.99848 * 182.39583 * 10 9 8 13 13 O 1.21362 * 119.99634 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99848 * 179.97438 * 12 10 9 15 15 C 1.46503 * 119.99676 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47243 * 324.99639 * 15 14 12 17 17 C 1.53001 * 109.47188 * 85.00026 * 15 14 12 18 18 C 1.53003 * 109.47034 * 204.99729 * 15 14 12 19 19 C 1.53000 * 109.46850 * 64.99779 * 18 15 14 20 20 H 1.08996 * 109.47450 * 305.00086 * 19 18 15 21 21 C 1.53001 * 109.47272 * 184.99640 * 19 18 15 22 22 N 1.46501 * 109.47023 * 65.00202 * 19 18 15 23 23 C 1.36934 * 120.00331 * 204.99529 * 22 19 18 24 24 H 1.08009 * 119.99891 * 0.02562 * 23 22 19 25 25 C 1.38808 * 120.00628 * 179.97438 * 23 22 19 26 26 N 1.31613 * 120.00650 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99571 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47170 * 89.99891 * 27 25 23 29 29 H 1.48498 * 109.46849 * 209.99558 * 27 25 23 30 30 H 1.48492 * 109.47282 * 329.99660 * 27 25 23 31 31 H 1.08993 * 109.47379 * 96.16002 * 1 2 3 32 32 H 1.09000 * 109.47514 * 216.16794 * 1 2 3 33 33 H 1.09006 * 109.46795 * 336.16343 * 1 2 3 34 34 H 1.07999 * 119.95407 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.92389 * 180.26855 * 4 3 2 36 36 H 1.07999 * 119.96412 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47084 * 89.99659 * 7 6 5 38 38 H 1.08993 * 109.47307 * 210.00290 * 7 6 5 39 39 H 1.09004 * 109.46816 * 330.00238 * 7 6 5 40 40 H 0.96999 * 119.99534 * 59.11571 * 9 8 6 41 41 H 0.97000 * 120.00310 * 359.97438 * 14 12 10 42 42 H 1.09003 * 109.47049 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46781 * 299.99594 * 17 15 14 44 44 H 1.09003 * 109.46948 * 59.99700 * 17 15 14 45 45 H 1.08996 * 109.47085 * 185.00130 * 18 15 14 46 46 H 1.08997 * 109.46973 * 305.00341 * 18 15 14 47 47 H 1.08993 * 109.47400 * 180.02562 * 21 19 18 48 48 H 1.08996 * 109.47247 * 300.00570 * 21 19 18 49 49 H 1.09003 * 109.46465 * 60.00437 * 21 19 18 50 50 H 0.96998 * 120.00222 * 24.99915 * 22 19 18 51 51 H 0.97001 * 120.00715 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1954 0.0000 4 6 3.5812 1.1963 0.0058 5 6 4.2766 0.0009 0.0054 6 6 3.5917 -1.1982 0.0001 7 6 4.3503 -2.5004 0.0002 8 6 2.2024 -1.2028 -0.0053 9 7 1.5061 -2.4141 -0.0111 10 6 0.6548 -2.6972 -1.0169 11 8 0.5255 -1.9195 -1.9396 12 6 -0.1296 -3.9681 -0.9959 13 8 0.0000 -4.7460 -0.0735 14 7 -0.9813 -4.2509 -2.0014 15 6 -1.7511 -5.4972 -1.9805 16 1 -1.1491 -6.2886 -1.5342 17 6 -3.0236 -5.2969 -1.1549 18 6 -2.1277 -5.8880 -3.4111 19 6 -0.8585 -6.2093 -4.2028 20 1 -0.1730 -5.3635 -4.1495 21 6 -1.2233 -6.4788 -5.6640 22 7 -0.2151 -7.3960 -3.6334 23 6 1.1306 -7.5901 -3.7968 24 1 1.7177 -6.8681 -4.3451 25 6 1.7403 -8.7141 -3.2569 26 7 3.0336 -8.9010 -3.4143 27 14 0.7250 -9.9625 -2.3080 28 1 0.2111 -10.9958 -3.2427 29 1 1.5739 -10.6080 -1.2746 30 1 -0.4170 -9.2761 -1.6525 31 1 -0.3634 -0.1103 -1.0216 32 1 -0.3634 -0.8296 0.6065 33 1 -0.3633 0.9401 0.4153 34 1 1.6584 2.1307 0.0004 35 1 4.1194 2.1326 0.0102 36 1 5.3566 0.0052 0.0095 37 1 4.5293 -2.8165 1.0279 38 1 3.7663 -3.2611 -0.5175 39 1 5.3042 -2.3651 -0.5096 40 1 1.6355 -3.0513 0.7087 41 1 -1.0852 -3.6289 -2.7385 42 1 -3.5965 -6.2241 -1.1398 43 1 -2.7553 -5.0185 -0.1358 44 1 -3.6255 -4.5054 -1.6013 45 1 -2.7745 -6.7650 -3.3898 46 1 -2.6532 -5.0604 -3.8874 47 1 -0.3193 -6.7081 -6.2279 48 1 -1.9088 -7.3245 -5.7174 49 1 -1.7020 -5.5958 -6.0876 50 1 -0.7422 -8.0442 -3.1408 51 1 3.4597 -9.6866 -3.0374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146821294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:04 Heat of formation + Delta-G solvation = -39.803883 kcal Electronic energy + Delta-G solvation = -31439.909437 eV Core-core repulsion = 27339.336631 eV Total energy + Delta-G solvation = -4100.572806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14301 -39.72265 -38.29526 -37.04825 -35.22681 -34.49510 -33.71362 -32.17674 -30.98658 -30.86012 -29.24726 -27.56340 -26.78690 -26.48168 -25.02361 -23.31940 -22.10196 -21.17262 -20.89006 -20.23798 -19.87645 -18.83076 -17.62388 -17.41326 -16.54141 -16.28859 -15.74001 -15.35013 -15.20486 -14.75052 -14.34153 -14.19143 -14.06088 -13.92197 -13.67416 -13.62112 -13.24376 -13.12692 -13.01073 -12.83633 -12.69256 -12.43567 -12.20819 -12.04583 -11.99950 -11.81193 -11.73992 -11.53983 -11.42819 -11.37129 -11.27436 -10.94965 -10.67680 -10.55254 -10.29923 -10.03856 -9.97943 -9.55644 -9.52975 -9.00013 -8.90905 -8.72280 -8.52844 -7.24388 -5.73568 -3.08826 1.00878 1.19656 1.56206 2.39802 3.29827 3.40117 3.42033 3.47957 3.54706 3.66333 4.49575 4.60323 4.62209 4.65387 4.78728 4.91708 5.08745 5.17986 5.21113 5.25018 5.28646 5.36582 5.46006 5.52808 5.54933 5.55769 5.61062 5.68478 5.70979 5.74660 5.82175 5.96460 5.96749 6.09640 6.15063 6.16200 6.17095 6.24263 6.28931 6.37551 6.38122 6.41047 6.42798 6.54697 6.78694 6.80620 6.97212 7.00089 7.42776 7.80426 8.02006 8.12063 8.45024 9.23643 9.96276 10.15482 11.44948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003197 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.812593 B = 8756.112241 C = 9984.412008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.080 4.080 7 C -0.121 4.121 8 C 0.132 3.868 9 N -0.650 5.650 10 C 0.512 3.488 11 O -0.502 6.502 12 C 0.511 3.489 13 O -0.514 6.514 14 N -0.683 5.683 15 C 0.140 3.860 16 H 0.104 0.896 17 C -0.162 4.162 18 C -0.135 4.135 19 C 0.174 3.826 20 H 0.055 0.945 21 C -0.165 4.165 22 N -0.746 5.746 23 C -0.239 4.239 24 H 0.088 0.912 25 C 0.006 3.994 26 N -0.935 5.935 27 Si 0.883 3.117 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.421 0.579 41 H 0.408 0.592 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.038 0.962 50 H 0.360 0.640 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 19.477 8.069 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.136 4.136 6 C -0.081 4.081 7 C -0.177 4.177 8 C 0.039 3.961 9 N -0.300 5.300 10 C 0.294 3.706 11 O -0.375 6.375 12 C 0.291 3.709 13 O -0.390 6.390 14 N -0.335 5.335 15 C 0.037 3.963 16 H 0.122 0.878 17 C -0.221 4.221 18 C -0.174 4.174 19 C 0.065 3.935 20 H 0.073 0.927 21 C -0.225 4.225 22 N -0.389 5.389 23 C -0.369 4.369 24 H 0.106 0.894 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.713 3.287 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.259 0.741 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.192 0.808 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.466 19.435 7.998 21.989 hybrid contribution -0.459 -1.050 0.583 1.286 sum -6.926 18.385 8.581 21.438 Atomic orbital electron populations 1.20890 0.90993 1.02191 1.03353 1.19910 0.96308 0.91945 0.98796 1.20876 0.94190 0.96948 1.01728 1.21140 0.94182 0.98032 0.99882 1.20895 0.99866 0.91351 1.01501 1.20011 0.92046 0.96418 0.99671 1.20819 1.00248 0.93984 1.02683 1.17233 0.89910 0.84769 1.04155 1.42996 1.42266 1.18891 1.25854 1.20412 0.80606 0.87252 0.82305 1.90750 1.64273 1.49220 1.33290 1.19733 0.80947 0.86385 0.83841 1.90785 1.64915 1.48688 1.34598 1.45738 1.41181 1.22872 1.23695 1.21190 0.92133 0.86085 0.96905 0.87762 1.22199 0.97298 1.02146 1.00434 1.22238 0.99394 1.01759 0.93998 1.20222 0.91599 0.90845 0.90822 0.92696 1.22406 1.01303 0.99646 0.99161 1.42779 1.06863 1.23800 1.65457 1.19020 0.82806 1.05918 1.29118 0.89445 1.24638 0.95455 0.98235 1.00676 1.69695 1.08679 1.29525 1.50361 0.86576 0.79771 0.82237 0.80103 1.21268 1.21841 1.20266 0.89668 0.92077 0.91640 0.85760 0.85843 0.85571 0.90759 0.90944 0.90904 0.74056 0.75590 0.91414 0.92309 0.92586 0.90343 0.91216 0.92360 0.93593 0.94254 0.80767 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.46 36.00 0.30 -0.95 16 2 C -0.07 -0.80 5.52 -104.42 -0.58 -1.37 16 3 C -0.12 -1.19 9.67 -39.61 -0.38 -1.57 16 4 C -0.11 -1.06 10.04 -39.54 -0.40 -1.46 16 5 C -0.12 -1.19 9.70 -39.61 -0.38 -1.57 16 6 C -0.08 -0.94 5.90 -104.42 -0.62 -1.55 16 7 C -0.12 -1.34 9.77 36.01 0.35 -0.99 16 8 C 0.13 1.68 5.67 -83.74 -0.48 1.20 16 9 N -0.65 -8.52 3.72 -10.29 -0.04 -8.56 16 10 C 0.51 7.62 6.60 -11.63 -0.08 7.55 16 11 O -0.50 -8.05 14.01 5.48 0.08 -7.97 16 12 C 0.51 8.21 7.85 -11.63 -0.09 8.11 16 13 O -0.51 -9.48 16.14 5.49 0.09 -9.39 16 14 N -0.68 -9.91 4.44 -54.26 -0.24 -10.15 16 15 C 0.14 2.08 2.52 -67.93 -0.17 1.90 16 16 H 0.10 1.96 7.05 -51.93 -0.37 1.60 16 17 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 18 C -0.14 -1.88 4.29 -26.73 -0.11 -1.99 16 19 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 20 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16 21 C -0.17 -2.77 9.49 37.16 0.35 -2.42 16 22 N -0.75 -17.05 4.30 -53.43 -0.23 -17.28 16 23 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 24 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -29.56 13.97 55.49 0.78 -28.79 16 27 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 30 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 31 H 0.08 1.02 6.62 -51.93 -0.34 0.68 16 32 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 33 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.95 7.46 -51.93 -0.39 0.57 16 39 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.42 5.09 8.29 -40.82 -0.34 4.75 16 41 H 0.41 5.29 8.07 -40.82 -0.33 4.96 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 51 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 416.79 15.07 6.28 6.28 Total: -1.00 -33.93 416.79 -8.65 -42.57 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -8.27 Total: 16.15 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.37 Total: -0.50 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.27 Total: -64.78 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.17 Total: -17.36 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.93 -8.65 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146821294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.770 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds