Wall clock time and date at job start Wed Apr 1 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38099 * 120.04503 * 2 1 4 4 C 1.38288 * 120.07862 * 179.72097 * 3 2 1 5 5 C 1.38289 * 120.15557 * 0.30156 * 4 3 2 6 6 C 1.38096 * 120.07442 * 359.95125 * 5 4 3 7 7 C 1.50706 * 120.04090 * 180.02562 * 6 5 4 8 8 C 1.38930 * 119.92616 * 0.02562 * 6 5 4 9 9 N 1.39724 * 120.08163 * 179.97438 * 8 6 5 10 10 C 1.34771 * 119.99995 * 239.11947 * 9 8 6 11 11 O 1.21372 * 120.00488 * 2.39633 * 10 9 8 12 12 C 1.49362 * 119.99848 * 182.39583 * 10 9 8 13 13 O 1.21362 * 119.99634 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99848 * 179.97438 * 12 10 9 15 15 C 1.46503 * 119.99676 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47243 * 324.99639 * 15 14 12 17 17 C 1.53001 * 109.47188 * 85.00026 * 15 14 12 18 18 C 1.53003 * 109.47034 * 204.99729 * 15 14 12 19 19 C 1.53000 * 109.46850 * 64.99779 * 18 15 14 20 20 H 1.08996 * 109.47450 * 305.00086 * 19 18 15 21 21 C 1.53001 * 109.47272 * 184.99640 * 19 18 15 22 22 N 1.46501 * 109.47023 * 65.00202 * 19 18 15 23 23 C 1.36934 * 120.00331 * 204.99529 * 22 19 18 24 24 H 1.08009 * 119.99891 * 0.02562 * 23 22 19 25 25 C 1.38808 * 120.00628 * 179.97438 * 23 22 19 26 26 N 1.31613 * 120.00650 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99571 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47170 * 89.99891 * 27 25 23 29 29 H 1.48498 * 109.46849 * 209.99558 * 27 25 23 30 30 H 1.48492 * 109.47282 * 329.99660 * 27 25 23 31 31 H 1.08993 * 109.47379 * 96.16002 * 1 2 3 32 32 H 1.09000 * 109.47514 * 216.16794 * 1 2 3 33 33 H 1.09006 * 109.46795 * 336.16343 * 1 2 3 34 34 H 1.07999 * 119.95407 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.92389 * 180.26855 * 4 3 2 36 36 H 1.07999 * 119.96412 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47084 * 89.99659 * 7 6 5 38 38 H 1.08993 * 109.47307 * 210.00290 * 7 6 5 39 39 H 1.09004 * 109.46816 * 330.00238 * 7 6 5 40 40 H 0.96999 * 119.99534 * 59.11571 * 9 8 6 41 41 H 0.97000 * 120.00310 * 359.97438 * 14 12 10 42 42 H 1.09003 * 109.47049 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46781 * 299.99594 * 17 15 14 44 44 H 1.09003 * 109.46948 * 59.99700 * 17 15 14 45 45 H 1.08996 * 109.47085 * 185.00130 * 18 15 14 46 46 H 1.08997 * 109.46973 * 305.00341 * 18 15 14 47 47 H 1.08993 * 109.47400 * 180.02562 * 21 19 18 48 48 H 1.08996 * 109.47247 * 300.00570 * 21 19 18 49 49 H 1.09003 * 109.46465 * 60.00437 * 21 19 18 50 50 H 0.96998 * 120.00222 * 24.99915 * 22 19 18 51 51 H 0.97001 * 120.00715 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1954 0.0000 4 6 3.5812 1.1963 0.0058 5 6 4.2766 0.0009 0.0054 6 6 3.5917 -1.1982 0.0001 7 6 4.3503 -2.5004 0.0002 8 6 2.2024 -1.2028 -0.0053 9 7 1.5061 -2.4141 -0.0111 10 6 0.6548 -2.6972 -1.0169 11 8 0.5255 -1.9195 -1.9396 12 6 -0.1296 -3.9681 -0.9959 13 8 0.0000 -4.7460 -0.0735 14 7 -0.9813 -4.2509 -2.0014 15 6 -1.7511 -5.4972 -1.9805 16 1 -1.1491 -6.2886 -1.5342 17 6 -3.0236 -5.2969 -1.1549 18 6 -2.1277 -5.8880 -3.4111 19 6 -0.8585 -6.2093 -4.2028 20 1 -0.1730 -5.3635 -4.1495 21 6 -1.2233 -6.4788 -5.6640 22 7 -0.2151 -7.3960 -3.6334 23 6 1.1306 -7.5901 -3.7968 24 1 1.7177 -6.8681 -4.3451 25 6 1.7403 -8.7141 -3.2569 26 7 3.0336 -8.9010 -3.4143 27 14 0.7250 -9.9625 -2.3080 28 1 0.2111 -10.9958 -3.2427 29 1 1.5739 -10.6080 -1.2746 30 1 -0.4170 -9.2761 -1.6525 31 1 -0.3634 -0.1103 -1.0216 32 1 -0.3634 -0.8296 0.6065 33 1 -0.3633 0.9401 0.4153 34 1 1.6584 2.1307 0.0004 35 1 4.1194 2.1326 0.0102 36 1 5.3566 0.0052 0.0095 37 1 4.5293 -2.8165 1.0279 38 1 3.7663 -3.2611 -0.5175 39 1 5.3042 -2.3651 -0.5096 40 1 1.6355 -3.0513 0.7087 41 1 -1.0852 -3.6289 -2.7385 42 1 -3.5965 -6.2241 -1.1398 43 1 -2.7553 -5.0185 -0.1358 44 1 -3.6255 -4.5054 -1.6013 45 1 -2.7745 -6.7650 -3.3898 46 1 -2.6532 -5.0604 -3.8874 47 1 -0.3193 -6.7081 -6.2279 48 1 -1.9088 -7.3245 -5.7174 49 1 -1.7020 -5.5958 -6.0876 50 1 -0.7422 -8.0442 -3.1408 51 1 3.4597 -9.6866 -3.0374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146821294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:03 Heat of formation + Delta-G solvation = -62.278005 kcal Electronic energy + Delta-G solvation = -31440.883988 eV Core-core repulsion = 27339.336631 eV Total energy + Delta-G solvation = -4101.547357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23843 -40.80350 -39.39499 -38.47089 -36.51235 -35.79189 -34.55944 -34.10206 -32.29096 -31.81317 -30.98765 -28.49834 -27.65168 -27.59538 -26.15103 -25.33322 -23.11940 -22.16140 -21.99410 -21.41442 -21.29660 -20.07717 -19.55894 -18.48077 -17.70658 -17.34229 -16.99266 -16.65157 -16.24724 -16.16370 -15.88941 -15.37712 -15.28581 -14.98655 -14.90772 -14.71341 -14.60688 -14.31667 -14.07719 -14.04345 -13.90866 -13.67689 -13.47847 -13.29524 -13.07897 -12.91379 -12.87186 -12.78316 -12.65721 -12.52396 -12.38290 -12.25684 -12.19320 -11.99903 -11.89460 -11.71521 -11.49327 -11.05498 -10.97882 -10.75259 -10.23021 -9.54169 -9.42669 -9.28492 -8.01174 -5.32453 0.04647 0.37754 0.44471 1.27092 1.35090 1.39576 1.45797 2.08041 2.48487 2.56814 2.72032 3.31287 3.34393 3.62791 3.75686 3.78371 3.84403 4.02186 4.05772 4.29710 4.36255 4.38256 4.42760 4.46854 4.51039 4.62191 4.67156 4.70596 4.74166 4.79674 4.80450 4.84794 4.89246 4.96426 5.06021 5.08427 5.13311 5.20954 5.26601 5.29593 5.30492 5.40947 5.43828 5.53458 5.56291 5.57512 5.78763 5.83042 6.04216 6.23009 6.26162 6.68400 6.91237 7.10904 7.88187 8.06007 9.21037 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003197 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.812593 B = 8756.112241 C = 9984.412008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.096 4.096 7 C -0.118 4.118 8 C 0.102 3.898 9 N -0.640 5.640 10 C 0.513 3.487 11 O -0.518 6.518 12 C 0.506 3.494 13 O -0.546 6.546 14 N -0.674 5.674 15 C 0.138 3.862 16 H 0.061 0.939 17 C -0.153 4.153 18 C -0.122 4.122 19 C 0.165 3.835 20 H 0.035 0.965 21 C -0.157 4.157 22 N -0.747 5.747 23 C -0.218 4.218 24 H 0.048 0.952 25 C -0.066 4.066 26 N -0.987 5.987 27 Si 0.951 3.049 28 H -0.276 1.276 29 H -0.302 1.302 30 H -0.251 1.251 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.422 0.578 41 H 0.417 0.583 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.076 0.924 50 H 0.364 0.636 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 21.326 8.407 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.098 4.098 7 C -0.175 4.175 8 C 0.010 3.990 9 N -0.289 5.289 10 C 0.295 3.705 11 O -0.393 6.393 12 C 0.286 3.714 13 O -0.424 6.424 14 N -0.326 5.326 15 C 0.034 3.966 16 H 0.080 0.920 17 C -0.211 4.211 18 C -0.161 4.161 19 C 0.057 3.943 20 H 0.053 0.947 21 C -0.217 4.217 22 N -0.391 5.391 23 C -0.349 4.349 24 H 0.066 0.934 25 C -0.257 4.257 26 N -0.639 5.639 27 Si 0.779 3.221 28 H -0.203 1.203 29 H -0.229 1.229 30 H -0.176 1.176 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.261 0.739 41 H 0.254 0.746 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.128 0.872 47 H 0.043 0.957 48 H 0.075 0.925 49 H 0.095 0.905 50 H 0.197 0.803 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.001 21.333 8.314 24.602 hybrid contribution 0.380 -1.460 0.418 1.566 sum -8.621 19.873 8.732 23.356 Atomic orbital electron populations 1.20843 0.90578 1.03133 1.02375 1.20165 0.96912 0.92282 0.99235 1.21240 0.94810 0.97213 1.00670 1.21550 0.94127 0.99002 0.98013 1.21218 1.01090 0.90959 1.00696 1.20184 0.91879 0.97264 1.00471 1.20792 1.00139 0.93301 1.03247 1.17541 0.90535 0.84770 1.06150 1.42935 1.41516 1.19265 1.25192 1.20232 0.80920 0.86729 0.82602 1.90729 1.65123 1.49509 1.33906 1.20014 0.81069 0.86558 0.83781 1.90759 1.66009 1.49751 1.35836 1.45769 1.40533 1.22931 1.23389 1.21201 0.92689 0.84840 0.97862 0.92035 1.22114 0.95953 1.03849 0.99153 1.22178 0.97260 1.03996 0.92626 1.20500 0.93069 0.88288 0.92408 0.94670 1.22277 1.00263 1.01799 0.97351 1.42776 1.04981 1.25525 1.65800 1.18935 0.84908 1.04288 1.26780 0.93358 1.25447 0.96605 1.00880 1.02788 1.69886 1.10902 1.30462 1.52610 0.85459 0.78636 0.79538 0.78469 1.20261 1.22929 1.17561 0.91167 0.92930 0.89250 0.83230 0.82659 0.83414 0.89469 0.93820 0.89912 0.73921 0.74587 0.89891 0.93702 0.90010 0.88539 0.87230 0.95699 0.92525 0.90533 0.80275 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 8.46 71.23 0.60 -1.74 16 2 C -0.08 -1.93 5.52 -19.73 -0.11 -2.04 16 3 C -0.12 -2.16 9.67 22.25 0.22 -1.95 16 4 C -0.11 -1.74 10.04 22.29 0.22 -1.52 16 5 C -0.12 -2.25 9.70 22.25 0.22 -2.03 16 6 C -0.10 -2.27 5.90 -19.73 -0.12 -2.39 16 7 C -0.12 -2.73 9.77 71.24 0.70 -2.03 16 8 C 0.10 2.64 5.67 38.22 0.22 2.86 16 9 N -0.64 -17.70 3.72 -304.83 -1.13 -18.83 16 10 C 0.51 15.94 6.60 87.24 0.58 16.51 16 11 O -0.52 -17.04 14.01 -3.31 -0.05 -17.09 16 12 C 0.51 16.78 7.85 87.24 0.68 17.47 16 13 O -0.55 -20.99 16.14 -3.28 -0.05 -21.04 16 14 N -0.67 -19.38 4.44 -443.95 -1.97 -21.35 16 15 C 0.14 3.87 2.52 44.99 0.11 3.98 16 16 H 0.06 2.30 7.05 -2.39 -0.02 2.29 16 17 C -0.15 -3.25 9.48 71.98 0.68 -2.57 16 18 C -0.12 -3.01 4.29 30.60 0.13 -2.88 16 19 C 0.16 5.79 2.84 44.99 0.13 5.92 16 20 H 0.04 1.38 7.56 -2.39 -0.02 1.36 16 21 C -0.16 -4.97 9.49 71.98 0.68 -4.29 16 22 N -0.75 -34.02 4.30 -322.94 -1.39 -35.41 16 23 C -0.22 -12.59 10.41 84.03 0.87 -11.71 16 24 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 25 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 26 N -0.99 -65.13 13.97 21.65 0.30 -64.83 16 27 Si 0.95 46.87 27.74 68.60 1.90 48.77 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 30 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 31 H 0.07 1.67 6.62 -2.39 -0.02 1.66 16 32 H 0.05 1.15 7.38 -2.39 -0.02 1.13 16 33 H 0.09 1.35 8.04 -2.38 -0.02 1.34 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.24 7.46 -2.39 -0.02 1.22 16 39 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 40 H 0.42 11.05 8.29 -92.71 -0.77 10.28 16 41 H 0.42 10.45 8.07 -92.71 -0.75 9.71 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 50 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 51 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -78.32 416.79 2.75 -75.56 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -1.14 Total: 46.17 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 6.29 Total: 8.05 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -4.19 Total: -140.43 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Total: -78.32 2.75 -75.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146821294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.286 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds