Wall clock time and date at job start Wed Apr 1 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38102 * 120.04306 * 2 1 4 4 C 1.38292 * 120.07732 * 180.30318 * 3 2 1 5 5 C 1.38287 * 120.15272 * 359.71550 * 4 3 2 6 6 C 1.38099 * 120.07773 * 0.02740 * 5 4 3 7 7 C 1.50699 * 120.03803 * 179.97438 * 6 5 4 8 8 C 1.38930 * 119.92390 * 359.97438 * 6 5 4 9 9 N 1.39720 * 120.07548 * 180.02562 * 8 6 5 10 10 C 1.34779 * 119.99809 * 127.88321 * 9 8 6 11 11 O 1.21373 * 120.00181 * 356.37195 * 10 9 8 12 12 C 1.49352 * 119.99473 * 176.37084 * 10 9 8 13 13 O 1.21359 * 120.00532 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99473 * 179.97438 * 12 10 9 15 15 C 1.46503 * 119.99688 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.47350 * 34.99951 * 15 14 12 17 17 C 1.53001 * 109.47295 * 274.99900 * 15 14 12 18 18 C 1.53002 * 109.46826 * 154.99922 * 15 14 12 19 19 C 1.53004 * 109.47271 * 294.99621 * 18 15 14 20 20 H 1.08999 * 109.46590 * 55.00205 * 19 18 15 21 21 C 1.52996 * 109.47119 * 175.00140 * 19 18 15 22 22 N 1.46495 * 109.47194 * 295.00529 * 19 18 15 23 23 C 1.36941 * 119.99945 * 155.00048 * 22 19 18 24 24 H 1.07997 * 119.99982 * 359.97438 * 23 22 19 25 25 C 1.38810 * 119.99573 * 179.97438 * 23 22 19 26 26 N 1.31628 * 119.99852 * 179.72310 * 25 23 22 27 27 Si 1.86801 * 120.00460 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46883 * 269.72651 * 27 25 23 29 29 H 1.48495 * 109.47168 * 29.72556 * 27 25 23 30 30 H 1.48503 * 109.47191 * 149.72719 * 27 25 23 31 31 H 1.09002 * 109.46908 * 278.11919 * 1 2 3 32 32 H 1.09003 * 109.46810 * 38.11414 * 1 2 3 33 33 H 1.08999 * 109.47436 * 158.11592 * 1 2 3 34 34 H 1.07999 * 119.95752 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.92107 * 179.74744 * 4 3 2 36 36 H 1.08007 * 119.96082 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47399 * 270.02277 * 7 6 5 38 38 H 1.09001 * 109.46995 * 30.02255 * 7 6 5 39 39 H 1.09003 * 109.47258 * 150.02068 * 7 6 5 40 40 H 0.97003 * 120.00032 * 307.87471 * 9 8 6 41 41 H 0.96999 * 120.00330 * 359.97438 * 14 12 10 42 42 H 1.08998 * 109.47004 * 59.99591 * 17 15 14 43 43 H 1.08998 * 109.47307 * 180.02562 * 17 15 14 44 44 H 1.09001 * 109.46964 * 300.00288 * 17 15 14 45 45 H 1.09004 * 109.47135 * 175.00109 * 18 15 14 46 46 H 1.08992 * 109.47592 * 55.00139 * 18 15 14 47 47 H 1.09004 * 109.47194 * 300.00347 * 21 19 18 48 48 H 1.08999 * 109.47337 * 60.00522 * 21 19 18 49 49 H 1.09000 * 109.47243 * 180.02562 * 21 19 18 50 50 H 0.97001 * 120.00438 * 334.99387 * 22 19 18 51 51 H 0.96993 * 119.99934 * 180.27444 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5813 1.1963 -0.0063 5 6 4.2766 0.0010 -0.0067 6 6 3.5917 -1.1982 -0.0014 7 6 4.3503 -2.5003 -0.0024 8 6 2.2024 -1.2027 0.0049 9 7 1.5062 -2.4141 0.0109 10 6 0.5532 -2.6391 0.9370 11 8 0.3451 -1.8174 1.8057 12 6 -0.2467 -3.8996 0.8942 13 8 -0.0384 -4.7215 0.0259 14 7 -1.1994 -4.1248 1.8207 15 6 -1.9845 -5.3610 1.7784 16 1 -1.3546 -6.1798 1.4308 17 6 -3.1645 -5.1833 0.8208 18 6 -2.5086 -5.6804 3.1799 19 6 -1.3306 -5.9807 4.1089 20 1 -0.6289 -5.1469 4.0868 21 6 -1.8442 -6.1774 5.5366 22 7 -0.6539 -7.2003 3.6608 23 6 0.6652 -7.4035 3.9673 24 1 1.2068 -6.6644 4.5389 25 6 1.3061 -8.5594 3.5431 26 7 2.5755 -8.7522 3.8329 27 14 0.3691 -9.8381 2.5551 28 1 -0.2477 -10.8234 3.4793 29 1 -0.6942 -9.1698 1.7626 30 1 1.3042 -10.5378 1.6379 31 1 -0.3633 0.1451 1.0174 32 1 -0.3633 0.8086 -0.6343 33 1 -0.3634 -0.9536 -0.3830 34 1 1.6584 2.1308 -0.0004 35 1 4.1194 2.1327 -0.0104 36 1 5.3567 0.0053 -0.0113 37 1 4.5289 -2.8159 -1.0303 38 1 5.3044 -2.3653 0.5072 39 1 3.7665 -3.2614 0.5151 40 1 1.7087 -3.0932 -0.6516 41 1 -1.3652 -3.4685 2.5154 42 1 -2.7911 -4.9557 -0.1776 43 1 -3.7489 -6.1029 0.7897 44 1 -3.7944 -4.3645 1.1685 45 1 -3.1650 -6.5493 3.1331 46 1 -3.0649 -4.8252 3.5635 47 1 -2.3476 -5.2699 5.8699 48 1 -2.5459 -7.0112 5.5586 49 1 -1.0049 -6.3909 6.1985 50 1 -1.1403 -7.8641 3.1472 51 1 3.0244 -9.5581 3.5332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146821297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:15 Heat of formation + Delta-G solvation = -37.587739 kcal Electronic energy + Delta-G solvation = -31454.547307 eV Core-core repulsion = 27354.070600 eV Total energy + Delta-G solvation = -4100.476707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21613 -39.72308 -38.30416 -37.05518 -35.24048 -34.50465 -33.69536 -32.17714 -30.99425 -30.85182 -29.24794 -27.57471 -26.79530 -26.48426 -25.03579 -23.32110 -22.10370 -21.22281 -20.88651 -20.21158 -19.87904 -18.82342 -17.62871 -17.42817 -16.56821 -16.31090 -15.76149 -15.34579 -15.16749 -14.74775 -14.34843 -14.21029 -14.06674 -13.94380 -13.68182 -13.62987 -13.25203 -13.12279 -13.03979 -12.79061 -12.69420 -12.43873 -12.21226 -12.01770 -12.00124 -11.81898 -11.74036 -11.50950 -11.42148 -11.35295 -11.27215 -10.95139 -10.67788 -10.55509 -10.30014 -10.18847 -9.97971 -9.55814 -9.52715 -9.00503 -8.90971 -8.71663 -8.44005 -7.24430 -5.73668 -3.08952 0.99439 1.19800 1.58565 2.38004 3.28414 3.40004 3.41869 3.47854 3.56351 3.65092 4.48202 4.60605 4.62097 4.65496 4.79635 4.91410 5.08292 5.17683 5.20962 5.24791 5.28262 5.35271 5.45739 5.51692 5.55571 5.56484 5.60703 5.69033 5.70721 5.74462 5.81921 5.96465 5.97295 6.07736 6.14875 6.15936 6.16792 6.23059 6.28729 6.37406 6.37629 6.40802 6.42467 6.54365 6.78721 6.80487 6.97037 6.99929 7.41900 7.78750 8.01970 8.11143 8.45024 9.23549 9.96168 10.15324 11.44857 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003191 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.373325 B = 8773.808339 C =10003.246703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.121 4.121 8 C 0.135 3.865 9 N -0.649 5.649 10 C 0.510 3.490 11 O -0.500 6.500 12 C 0.511 3.489 13 O -0.514 6.514 14 N -0.682 5.682 15 C 0.140 3.860 16 H 0.104 0.896 17 C -0.162 4.162 18 C -0.135 4.135 19 C 0.174 3.826 20 H 0.055 0.945 21 C -0.165 4.165 22 N -0.746 5.746 23 C -0.239 4.239 24 H 0.088 0.912 25 C 0.005 3.995 26 N -0.935 5.935 27 Si 0.883 3.117 28 H -0.286 1.286 29 H -0.277 1.277 30 H -0.292 1.292 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.421 0.579 41 H 0.408 0.592 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.045 0.955 49 H 0.057 0.943 50 H 0.360 0.640 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 19.197 -9.568 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.087 4.087 7 C -0.178 4.178 8 C 0.042 3.958 9 N -0.298 5.298 10 C 0.293 3.707 11 O -0.373 6.373 12 C 0.291 3.709 13 O -0.390 6.390 14 N -0.335 5.335 15 C 0.037 3.963 16 H 0.122 0.878 17 C -0.221 4.221 18 C -0.174 4.174 19 C 0.065 3.935 20 H 0.073 0.927 21 C -0.225 4.225 22 N -0.389 5.389 23 C -0.369 4.369 24 H 0.106 0.894 25 C -0.190 4.190 26 N -0.583 5.583 27 Si 0.713 3.287 28 H -0.213 1.213 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.260 0.740 41 H 0.244 0.756 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.192 0.808 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.405 19.149 -9.477 22.039 hybrid contribution -0.411 -1.089 -0.569 1.296 sum -5.816 18.060 -10.046 21.469 Atomic orbital electron populations 1.20876 0.90910 1.01845 1.03003 1.19850 0.96347 0.91841 0.99200 1.20846 0.94172 0.96970 1.01508 1.21122 0.94168 0.98019 1.00275 1.20879 0.99825 0.91332 1.01347 1.19931 0.91857 0.96442 1.00468 1.20819 1.00290 0.94003 1.02650 1.17272 0.90004 0.84834 1.03704 1.43043 1.36554 1.17369 1.32807 1.20388 0.81057 0.87538 0.81747 1.90765 1.66361 1.46143 1.34049 1.19723 0.81331 0.86583 0.83275 1.90785 1.66853 1.45644 1.35685 1.45737 1.35367 1.22332 1.30030 1.21191 0.92324 0.86644 0.96153 0.87758 1.22199 0.97934 1.02137 0.99809 1.22238 0.99161 1.01970 0.94016 1.20220 0.91736 0.90487 0.91045 0.92700 1.22407 1.00942 0.99561 0.99608 1.42783 1.10235 1.20191 1.65698 1.19021 0.85181 1.03830 1.28828 0.89444 1.24645 0.95697 0.98015 1.00670 1.69702 1.09437 1.28051 1.51069 0.86572 0.79304 0.82441 0.80335 1.21271 1.20269 1.21838 0.89620 0.91850 0.92572 0.85752 0.85863 0.85586 0.90793 0.90872 0.90968 0.74016 0.75582 0.92312 0.91407 0.92583 0.90341 0.91213 0.94259 0.93588 0.92363 0.80757 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.22 36.00 0.30 -0.91 16 2 C -0.07 -0.84 5.48 -104.42 -0.57 -1.41 16 3 C -0.12 -1.17 9.73 -39.61 -0.39 -1.56 16 4 C -0.12 -1.09 10.04 -39.54 -0.40 -1.49 16 5 C -0.12 -1.15 9.70 -39.61 -0.38 -1.54 16 6 C -0.09 -0.99 5.90 -104.42 -0.62 -1.61 16 7 C -0.12 -1.30 9.67 36.01 0.35 -0.95 16 8 C 0.13 1.72 5.84 -83.75 -0.49 1.23 16 9 N -0.65 -8.55 3.90 -10.30 -0.04 -8.59 16 10 C 0.51 7.59 6.03 -11.63 -0.07 7.52 16 11 O -0.50 -7.92 13.54 5.48 0.07 -7.85 16 12 C 0.51 8.20 7.85 -11.63 -0.09 8.11 16 13 O -0.51 -9.49 16.14 5.49 0.09 -9.40 16 14 N -0.68 -9.88 4.44 -54.26 -0.24 -10.13 16 15 C 0.14 2.07 2.52 -67.93 -0.17 1.90 16 16 H 0.10 1.96 7.05 -51.93 -0.37 1.60 16 17 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 18 C -0.14 -1.88 4.29 -26.73 -0.11 -1.99 16 19 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 20 H 0.06 1.07 7.56 -51.93 -0.39 0.67 16 21 C -0.17 -2.77 9.49 37.16 0.35 -2.42 16 22 N -0.75 -17.05 4.30 -53.43 -0.23 -17.28 16 23 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 24 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 27 Si 0.88 22.35 27.74 -169.99 -4.72 17.64 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.56 6.51 56.52 0.37 -6.19 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 31 H 0.09 1.02 7.09 -51.93 -0.37 0.65 16 32 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.06 0.65 6.17 -51.93 -0.32 0.33 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.07 0.91 7.45 -51.93 -0.39 0.52 16 40 H 0.42 5.13 8.15 -40.82 -0.33 4.80 16 41 H 0.41 5.26 8.07 -40.82 -0.33 4.93 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.36 8.14 5.65 -40.82 -0.23 7.91 16 51 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 414.97 15.07 6.25 6.25 Total: -1.00 -33.90 414.97 -8.66 -42.55 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -8.23 Total: 16.10 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.39 Total: -0.51 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.26 Total: -64.79 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.72 Total: 17.64 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.90 -8.66 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146821297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.967 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds