Wall clock time and date at job start Wed Apr 1 2020 04:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47057 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.46843 * 179.97438 * 14 13 12 16 16 C 1.46900 * 110.99536 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46737 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00373 * 0.02562 * 17 16 15 19 19 N 1.34785 * 119.99889 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99788 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00513 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99912 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99777 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47380 * 89.99853 * 24 22 20 26 26 H 1.48506 * 109.47029 * 210.00014 * 24 22 20 27 27 H 1.48506 * 109.47188 * 329.99906 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 41 41 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 42 42 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 43 43 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 44 44 H 1.08998 * 109.46699 * 299.99205 * 14 13 12 45 45 H 1.08996 * 109.47144 * 59.99633 * 14 13 12 46 46 H 1.00899 * 111.00353 * 56.04092 * 15 14 13 47 47 H 1.08994 * 109.47402 * 299.99887 * 16 15 14 48 48 H 1.09002 * 109.47354 * 60.00118 * 16 15 14 49 49 H 0.96999 * 119.99831 * 0.02562 * 19 17 16 50 50 H 0.96998 * 119.99812 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 6 6.5090 -6.2728 4.4957 15 7 7.2431 -7.5452 4.4965 16 6 7.5054 -8.0006 5.8683 17 6 8.2578 -9.3058 5.8290 18 8 8.5474 -9.8071 4.7632 19 7 8.6097 -9.9156 6.9783 20 6 9.2946 -11.1027 6.9425 21 1 9.5524 -11.5491 5.9935 22 6 9.6570 -11.7317 8.1274 23 7 10.3139 -12.8693 8.0932 24 14 9.2104 -10.9601 9.7689 25 1 7.8796 -11.4557 10.2031 26 1 10.2308 -11.3285 10.7830 27 1 9.1658 -9.4826 9.6256 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 5.5624 -4.6303 0.9335 40 1 6.0793 -3.7467 3.5657 41 1 4.5376 -4.6363 3.5653 42 1 5.6667 -6.5912 2.5389 43 1 7.2082 -5.7011 2.5396 44 1 7.0975 -5.5131 5.0099 45 1 5.5561 -6.4031 5.0085 46 1 8.1011 -7.4681 3.9711 47 1 8.1013 -7.2530 6.3917 48 1 6.5596 -8.1425 6.3912 49 1 8.3785 -9.5146 7.8307 50 1 10.5672 -13.3081 8.9203 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165702170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:31 Heat of formation + Delta-G solvation = -65.427554 kcal Electronic energy + Delta-G solvation = -27930.149249 eV Core-core repulsion = 23828.465317 eV Total energy + Delta-G solvation = -4101.683932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47097 -39.36327 -38.51662 -36.65809 -34.94257 -33.92205 -33.87729 -33.86086 -31.76187 -31.47172 -28.98280 -27.59250 -27.04378 -26.94049 -24.75541 -23.16939 -21.79968 -21.66102 -21.08794 -20.27675 -19.37607 -18.34342 -17.32017 -16.74149 -16.53650 -16.40256 -16.11493 -15.83253 -15.41206 -14.94356 -14.67100 -14.50671 -14.49274 -14.23899 -13.94297 -13.57975 -13.55657 -13.36487 -13.33705 -13.24131 -13.00149 -12.91371 -12.65062 -12.37754 -12.19000 -12.04375 -11.91746 -11.84286 -11.72367 -11.55220 -11.36268 -11.32544 -11.19892 -11.03014 -10.60192 -10.19103 -9.98442 -9.58315 -9.37537 -8.93266 -8.84712 -8.61685 -8.21472 -8.16608 -6.32087 -3.83560 1.00385 1.07034 2.34979 2.82754 3.01974 3.06638 3.14687 3.44179 3.72762 4.05573 4.10218 4.19956 4.36735 4.43777 4.55031 4.72918 4.77012 4.78635 4.82817 4.90200 4.97729 4.98133 5.03559 5.09438 5.19411 5.20511 5.21373 5.23079 5.25982 5.34453 5.44044 5.46954 5.49958 5.55097 5.61824 5.79106 5.79550 5.85689 5.88863 5.92798 5.98370 6.12999 6.19572 6.21282 6.30562 6.70457 7.04894 7.16974 7.53368 7.57407 7.92651 8.13401 8.58781 8.93904 9.41447 9.81525 10.81035 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.001193 C = 0.001192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.915911 B =23457.152654 C =23493.896343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.058 4.058 8 C -0.103 4.103 9 C 0.512 3.488 10 O -0.531 6.531 11 N -0.731 5.731 12 C 0.121 3.879 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.350 0.650 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 29.918 -16.933 38.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.171 4.171 6 C -0.130 4.130 7 C -0.058 4.058 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.384 5.384 12 C -0.003 4.003 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.129 4.129 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.092 0.908 46 H 0.170 0.830 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.801 29.496 -16.918 37.928 hybrid contribution 0.658 0.682 1.477 1.754 sum -16.144 30.178 -15.441 37.547 Atomic orbital electron populations 1.20789 0.91177 1.02669 1.02453 1.19842 0.96005 0.93003 0.99314 1.20892 0.93531 0.97504 1.02152 1.19842 0.93808 0.95193 0.99346 1.20789 0.99989 0.94067 1.02232 1.20820 0.99463 0.91468 1.01212 1.19193 0.93481 0.93428 0.99703 1.20684 1.02407 0.96433 0.94781 1.20539 0.77685 0.80659 0.91302 1.90747 1.50076 1.53510 1.46304 1.46027 1.58835 1.24257 1.09273 1.21311 1.00451 0.95982 0.82567 1.21743 1.00982 0.95895 0.98117 1.21834 0.99160 0.90188 0.95597 1.60050 1.28331 1.28494 1.13296 1.21706 1.00297 0.95931 0.90565 1.19710 0.84835 0.87194 0.84745 1.90561 1.58046 1.66774 1.29357 1.42208 1.52170 1.22352 1.06240 1.19439 1.30991 0.96252 0.96805 0.86275 1.25034 0.97052 0.95966 0.98038 1.69619 1.38197 1.15964 1.28328 0.86670 0.79284 0.79249 0.84164 1.19572 1.20171 1.19535 1.20821 0.93323 0.97623 1.01178 0.91101 0.91601 0.91530 0.86254 0.91196 0.91562 0.91508 0.86347 0.87805 0.87847 0.76379 0.91537 0.91290 0.90049 0.91191 0.95220 0.90755 0.83020 0.93696 0.89410 0.79662 0.91600 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.30 16 2 C -0.08 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.99 9.36 -39.59 -0.37 -1.36 16 4 C -0.08 -0.67 5.88 -104.62 -0.62 -1.29 16 5 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 6 C -0.11 -0.96 9.36 -39.58 -0.37 -1.34 16 7 C -0.06 -0.50 4.37 -104.63 -0.46 -0.95 16 8 C -0.10 -0.65 5.83 -29.03 -0.17 -0.82 16 9 C 0.51 4.80 7.82 -10.99 -0.09 4.71 16 10 O -0.53 -7.37 16.03 5.55 0.09 -7.28 16 11 N -0.73 -5.46 5.56 -60.30 -0.33 -5.80 16 12 C 0.12 1.05 5.67 -4.05 -0.02 1.02 16 13 C -0.13 -1.12 5.59 -26.73 -0.15 -1.27 16 14 C 0.06 0.67 5.69 -3.82 -0.02 0.65 16 15 N -0.67 -9.96 6.13 -115.06 -0.70 -10.66 16 16 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 17 C 0.45 10.17 7.82 -10.98 -0.09 10.08 16 18 O -0.57 -15.13 15.78 5.55 0.09 -15.04 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 24 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 28 C -0.11 -0.97 9.36 -39.59 -0.37 -1.34 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.40 1.91 8.47 -40.82 -0.35 1.57 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 427.95 15.07 6.45 6.45 Total: -1.00 -36.34 427.95 -9.79 -46.13 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.48 Total: 11.43 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.89 Total: -0.80 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.32 Total: -55.51 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.18 Total: -22.33 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -36.34 -9.79 -46.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165702170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.298 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds