Wall clock time and date at job start Wed Apr 1 2020 04:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47057 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.46843 * 179.97438 * 14 13 12 16 16 C 1.46900 * 110.99536 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46737 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00373 * 0.02562 * 17 16 15 19 19 N 1.34785 * 119.99889 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99788 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00513 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99912 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99777 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47380 * 89.99853 * 24 22 20 26 26 H 1.48506 * 109.47029 * 210.00014 * 24 22 20 27 27 H 1.48506 * 109.47188 * 329.99906 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 41 41 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 42 42 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 43 43 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 44 44 H 1.08998 * 109.46699 * 299.99205 * 14 13 12 45 45 H 1.08996 * 109.47144 * 59.99633 * 14 13 12 46 46 H 1.00899 * 111.00353 * 56.04092 * 15 14 13 47 47 H 1.08994 * 109.47402 * 299.99887 * 16 15 14 48 48 H 1.09002 * 109.47354 * 60.00118 * 16 15 14 49 49 H 0.96999 * 119.99831 * 0.02562 * 19 17 16 50 50 H 0.96998 * 119.99812 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 6 6.5090 -6.2728 4.4957 15 7 7.2431 -7.5452 4.4965 16 6 7.5054 -8.0006 5.8683 17 6 8.2578 -9.3058 5.8290 18 8 8.5474 -9.8071 4.7632 19 7 8.6097 -9.9156 6.9783 20 6 9.2946 -11.1027 6.9425 21 1 9.5524 -11.5491 5.9935 22 6 9.6570 -11.7317 8.1274 23 7 10.3139 -12.8693 8.0932 24 14 9.2104 -10.9601 9.7689 25 1 7.8796 -11.4557 10.2031 26 1 10.2308 -11.3285 10.7830 27 1 9.1658 -9.4826 9.6256 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 5.5624 -4.6303 0.9335 40 1 6.0793 -3.7467 3.5657 41 1 4.5376 -4.6363 3.5653 42 1 5.6667 -6.5912 2.5389 43 1 7.2082 -5.7011 2.5396 44 1 7.0975 -5.5131 5.0099 45 1 5.5561 -6.4031 5.0085 46 1 8.1011 -7.4681 3.9711 47 1 8.1013 -7.2530 6.3917 48 1 6.5596 -8.1425 6.3912 49 1 8.3785 -9.5146 7.8307 50 1 10.5672 -13.3081 8.9203 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165702170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:30 Heat of formation + Delta-G solvation = -92.283738 kcal Electronic energy + Delta-G solvation = -27931.313820 eV Core-core repulsion = 23828.465317 eV Total energy + Delta-G solvation = -4102.848503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11747 -40.31232 -39.98841 -37.65752 -36.13666 -35.64630 -34.47263 -34.37446 -33.75759 -32.45622 -29.66014 -28.52533 -27.84428 -27.56163 -26.23182 -24.40540 -22.59098 -22.31427 -21.62566 -21.29622 -20.91071 -20.23611 -18.03770 -17.80553 -17.32480 -17.27626 -16.97530 -16.87680 -16.73255 -16.28082 -15.73230 -15.50431 -15.32179 -15.10998 -14.90077 -14.85045 -14.46861 -14.40543 -14.18042 -14.00770 -13.87113 -13.84287 -13.49829 -13.34762 -13.31510 -13.09286 -12.88184 -12.68717 -12.53695 -12.42903 -12.40347 -12.35828 -11.97860 -11.89306 -11.85524 -11.83272 -11.51619 -10.97375 -10.44778 -10.25116 -10.08818 -9.51324 -9.42197 -9.33893 -8.41603 -6.02576 0.41537 0.48203 1.30470 1.35869 1.44597 1.65634 1.95055 2.18147 2.22994 2.73784 2.87933 3.14859 3.42172 3.66034 3.86437 3.93987 3.97936 4.01049 4.13314 4.18638 4.23459 4.26700 4.37245 4.43942 4.44672 4.53123 4.55906 4.58099 4.61269 4.70175 4.70682 4.72995 4.79254 4.79696 4.83275 4.99807 5.06177 5.17143 5.21792 5.28757 5.36198 5.46449 5.52429 5.61882 5.64929 5.73100 5.90074 6.03947 6.15717 6.39192 6.57720 6.59539 6.87646 7.27884 7.39417 7.95715 8.76027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.001193 C = 0.001192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.915911 B =23457.152654 C =23493.896343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.070 4.070 8 C -0.097 4.097 9 C 0.511 3.489 10 O -0.581 6.581 11 N -0.720 5.720 12 C 0.127 3.873 13 C -0.116 4.116 14 C 0.063 3.937 15 N -0.687 5.687 16 C 0.061 3.939 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.331 4.331 21 H 0.056 0.944 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.231 1.231 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.417 0.583 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.346 0.654 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.497 32.370 -16.003 40.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.156 4.156 4 C -0.094 4.094 5 C -0.169 4.169 6 C -0.149 4.149 7 C -0.070 4.070 8 C -0.136 4.136 9 C 0.299 3.701 10 O -0.461 6.461 11 N -0.373 5.373 12 C 0.003 3.997 13 C -0.154 4.154 14 C -0.066 4.066 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.460 4.460 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.155 1.155 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.095 0.905 48 H 0.131 0.869 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.044 31.955 -16.024 40.043 hybrid contribution 1.058 -0.118 1.045 1.491 sum -16.986 31.836 -14.979 39.070 Atomic orbital electron populations 1.20819 0.89759 1.03666 1.02678 1.20191 0.97288 0.93052 0.98833 1.21177 0.93839 0.98216 1.02411 1.20194 0.94237 0.96103 0.98832 1.20818 0.99827 0.93165 1.03084 1.21078 1.00088 0.91897 1.01880 1.19491 0.93781 0.94400 0.99326 1.20737 1.03837 0.96014 0.93056 1.21041 0.76776 0.80326 0.91980 1.90726 1.52291 1.55103 1.47988 1.45938 1.58006 1.23913 1.09427 1.21156 0.99790 0.95669 0.83101 1.21595 1.01268 0.95552 0.97012 1.21910 0.98962 0.88652 0.97081 1.60054 1.28406 1.31020 1.12483 1.21633 1.00801 0.92509 0.92183 1.21007 0.83347 0.88610 0.83486 1.90538 1.59553 1.68564 1.31233 1.42039 1.52259 1.21238 1.07719 1.19028 1.33305 0.98642 0.95043 0.92614 1.26099 0.96032 0.96135 1.02922 1.69800 1.39498 1.18001 1.30149 0.85372 0.79199 0.80297 0.76696 1.18199 1.20011 1.15457 1.21080 0.93777 0.98234 1.01873 0.91147 0.90425 0.90763 0.84821 0.90033 0.90893 0.91405 0.85563 0.85417 0.85388 0.74594 0.92239 0.92237 0.90296 0.90429 0.93889 0.90148 0.83577 0.90549 0.86854 0.77450 0.91128 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.09 -1.51 5.88 -19.87 -0.12 -1.62 16 3 C -0.14 -2.19 9.36 22.27 0.21 -1.98 16 4 C -0.09 -1.50 5.88 -19.86 -0.12 -1.62 16 5 C -0.11 -1.21 10.01 71.24 0.71 -0.49 16 6 C -0.13 -2.22 9.36 22.27 0.21 -2.01 16 7 C -0.07 -1.15 4.37 -19.87 -0.09 -1.24 16 8 C -0.10 -1.06 5.83 29.10 0.17 -0.89 16 9 C 0.51 8.96 7.82 87.66 0.69 9.65 16 10 O -0.58 -16.06 16.03 -3.05 -0.05 -16.11 16 11 N -0.72 -9.45 5.56 -463.07 -2.57 -12.02 16 12 C 0.13 1.99 5.67 86.38 0.49 2.48 16 13 C -0.12 -1.75 5.59 30.60 0.17 -1.58 16 14 C 0.06 1.19 5.69 86.30 0.49 1.68 16 15 N -0.69 -18.97 6.13 -517.93 -3.17 -22.15 16 16 C 0.06 1.81 6.17 85.56 0.53 2.34 16 17 C 0.45 20.01 7.82 87.66 0.69 20.70 16 18 O -0.61 -33.80 15.78 -3.07 -0.05 -33.85 16 19 N -0.59 -27.73 5.09 -306.97 -1.56 -29.29 16 20 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 21 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.93 -56.22 13.96 21.66 0.30 -55.91 16 24 Si 0.96 38.61 27.74 68.60 1.90 40.51 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 28 C -0.13 -2.23 9.36 22.27 0.21 -2.02 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.66 8.08 -2.39 -0.02 0.65 16 35 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.13 0.77 8.08 -2.39 -0.02 0.75 16 38 H 0.13 0.75 8.09 -2.39 -0.02 0.73 16 39 H 0.42 2.95 8.47 -92.71 -0.79 2.17 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.35 10.08 8.43 -89.69 -0.76 9.32 16 47 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 49 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 50 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -84.90 427.95 -0.11 -85.02 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.19 Total: 39.71 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.27 Total: 4.10 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -7.01 Total: -119.37 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.10 Total: -49.96 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -84.90 -0.11 -85.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165702170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.267 kcal (2) G-P(sol) polarization free energy of solvation -84.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds