Wall clock time and date at job start Wed Apr 1 2020 04:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85878 * 2 1 4 4 C 1.37951 * 120.15117 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07735 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84949 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47596 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47208 * 179.97438 * 12 11 10 14 14 C 1.46907 * 110.99733 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.46933 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99793 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99986 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99779 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47034 * 90.00278 * 22 20 18 24 24 H 1.48501 * 109.47162 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47382 * 330.00157 * 22 20 18 26 26 C 1.39569 * 119.71017 * 0.24996 * 6 4 3 27 27 C 1.50705 * 120.07038 * 179.72433 * 26 6 4 28 28 C 1.37957 * 119.85643 * 359.47467 * 26 6 4 29 29 H 1.09001 * 109.46832 * 89.99927 * 1 2 3 30 30 H 1.09004 * 109.47439 * 209.99755 * 1 2 3 31 31 H 1.09000 * 109.47092 * 330.00489 * 1 2 3 32 32 H 1.08002 * 119.92144 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47235 * 269.97921 * 5 4 3 34 34 H 1.09001 * 109.47202 * 29.97824 * 5 4 3 35 35 H 1.09003 * 109.47390 * 149.97905 * 5 4 3 36 36 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.09007 * 109.46479 * 300.00271 * 11 10 9 40 40 H 1.09003 * 109.47114 * 59.99483 * 11 10 9 41 41 H 1.08998 * 109.46818 * 300.00027 * 12 11 10 42 42 H 1.09002 * 109.47128 * 59.99191 * 12 11 10 43 43 H 1.00891 * 110.99960 * 56.04611 * 13 12 11 44 44 H 1.09001 * 109.47119 * 299.99811 * 14 13 12 45 45 H 1.09000 * 109.47102 * 60.00106 * 14 13 12 46 46 H 0.96997 * 120.00245 * 0.02562 * 17 15 14 47 47 H 0.96997 * 119.99370 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46898 * 90.00261 * 27 26 6 49 49 H 1.08999 * 109.46910 * 209.99947 * 27 26 6 50 50 H 1.09001 * 109.47632 * 330.00134 * 27 26 6 51 51 H 1.07997 * 119.92986 * 180.27570 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7547 -0.0001 0.0005 8 8 6.3625 -0.0001 1.0532 9 7 6.4285 -0.0059 -1.1667 10 6 7.8935 -0.0119 -1.1667 11 6 8.4035 -0.0170 -2.6092 12 6 9.9334 -0.0240 -2.6093 13 7 10.4230 -0.0295 -3.9943 14 6 11.8915 -0.0357 -4.0334 15 6 12.3557 -0.0418 -5.4671 16 8 11.5432 -0.0406 -6.3677 17 7 13.6737 -0.0476 -5.7487 18 6 14.0960 -0.0526 -7.0530 19 1 13.3725 -0.0516 -7.8549 20 6 15.4549 -0.0591 -7.3433 21 7 15.8596 -0.0634 -8.5935 22 14 16.7062 -0.0602 -5.9564 23 1 17.0320 -1.4605 -5.5848 24 1 17.9409 0.6334 -6.4031 25 1 16.1405 0.6456 -4.7786 26 6 3.5752 -1.2070 -0.0053 27 6 4.3238 -2.5150 -0.0116 28 6 2.1957 -1.2001 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1331 -0.0004 33 1 4.5051 2.8302 -1.0264 34 1 3.7316 3.2723 0.5146 35 1 5.2764 2.3881 0.5156 36 1 5.9435 -0.0058 -2.0067 37 1 8.2605 0.8777 -0.6551 38 1 8.2531 -0.9022 -0.6507 39 1 8.0364 -0.9066 -3.1212 40 1 8.0438 0.8734 -3.1249 41 1 10.3008 0.8653 -2.0972 42 1 10.2927 -0.9146 -2.0937 43 1 10.0511 0.7523 -4.5123 44 1 12.2722 0.8540 -3.5317 45 1 12.2648 -0.9260 -3.5273 46 1 14.3236 -0.0482 -5.0285 47 1 16.8082 -0.0676 -8.7961 48 1 4.5042 -2.8353 1.0145 49 1 3.7318 -3.2699 -0.5291 50 1 5.2767 -2.3859 -0.5248 51 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175440303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:37 Heat of formation + Delta-G solvation = -91.452475 kcal Electronic energy + Delta-G solvation = -28676.400954 eV Core-core repulsion = 24573.588497 eV Total energy + Delta-G solvation = -4102.812457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54040 -40.31034 -39.70648 -37.66021 -36.14977 -35.67572 -34.63278 -34.53514 -33.75573 -32.37265 -29.13921 -28.91808 -28.10249 -27.72425 -26.27097 -24.50236 -22.76862 -22.59732 -21.82932 -21.29714 -20.96152 -20.24537 -18.66408 -17.86155 -17.47297 -17.26711 -17.10325 -16.75108 -16.16787 -16.04638 -15.69450 -15.38297 -15.20949 -15.15000 -14.92661 -14.81317 -14.38152 -14.35929 -14.18949 -14.14454 -14.02670 -13.98525 -13.63613 -13.45212 -13.32698 -13.20716 -12.89353 -12.74692 -12.66343 -12.46089 -12.41517 -12.38567 -12.19510 -11.97743 -11.96860 -11.85893 -11.51514 -11.05683 -10.44776 -10.25055 -10.19957 -9.59757 -9.57566 -9.33679 -8.41551 -6.02568 0.09866 0.34313 1.30578 1.36013 1.44762 1.45453 1.95220 2.07996 2.23077 2.60371 2.75238 3.14893 3.40824 3.62464 3.74446 3.76602 3.87326 3.98511 4.11001 4.16911 4.21394 4.30196 4.35145 4.43738 4.44891 4.54871 4.55921 4.57927 4.61944 4.64413 4.66643 4.68930 4.76430 4.78467 4.86506 4.93126 5.03879 5.13693 5.18393 5.24346 5.26655 5.35682 5.42351 5.46398 5.52464 5.60190 5.90060 5.96787 6.04032 6.37678 6.41792 6.59560 6.87703 7.08542 7.39493 7.95896 8.76080 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.001380 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.135310 B =20282.971637 C =20420.776729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.120 4.120 6 C -0.160 4.160 7 C 0.573 3.427 8 O -0.578 6.578 9 N -0.710 5.710 10 C 0.126 3.874 11 C -0.117 4.117 12 C 0.064 3.936 13 N -0.688 5.688 14 C 0.061 3.939 15 C 0.447 3.553 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.331 4.331 19 H 0.055 0.945 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.231 1.231 26 C -0.053 4.053 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.413 0.587 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.345 0.655 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.057 0.943 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.798 1.200 24.357 37.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.153 4.153 4 C -0.054 4.054 5 C -0.177 4.177 6 C -0.163 4.163 7 C 0.360 3.640 8 O -0.458 6.458 9 N -0.361 5.361 10 C 0.002 3.998 11 C -0.155 4.155 12 C -0.065 4.065 13 N -0.320 5.320 14 C -0.071 4.071 15 C 0.235 3.765 16 O -0.499 6.499 17 N -0.233 5.233 18 C -0.460 4.460 19 H 0.073 0.927 20 C -0.212 4.212 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.154 1.154 26 C -0.054 4.054 27 C -0.177 4.177 28 C -0.153 4.153 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.164 0.836 44 H 0.095 0.905 45 H 0.132 0.868 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.112 0.888 50 H 0.076 0.924 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.768 0.520 24.266 37.639 hybrid contribution 1.245 0.847 -0.136 1.511 sum -27.523 1.367 24.130 36.628 Atomic orbital electron populations 1.20901 0.88849 1.03992 1.03504 1.20415 0.97762 0.92588 0.95622 1.21114 0.92540 0.99085 1.02585 1.20060 0.94483 0.93956 0.96892 1.20895 0.99499 0.93863 1.03433 1.19661 0.91838 0.94813 1.09982 1.18473 0.87577 0.74445 0.83548 1.90779 1.70640 1.51520 1.32862 1.46009 1.07634 1.73912 1.08593 1.21271 0.78902 1.02311 0.97342 1.21596 0.95063 1.03952 0.94862 1.21894 0.94551 1.01894 0.88138 1.60048 1.06255 1.51584 1.14135 1.21634 0.89875 1.04062 0.91524 1.21012 0.81971 0.81100 0.92373 1.90540 1.54132 1.55164 1.50091 1.42038 1.06663 1.67752 1.06802 1.19024 0.92844 1.50470 0.83665 0.92662 1.26108 0.99106 0.95989 1.00025 1.69804 1.17118 1.50237 1.20297 0.85367 0.77747 0.79953 0.78464 1.18187 1.20019 1.15430 1.20056 0.94493 0.93941 0.96919 1.20900 0.99894 0.94021 1.02908 1.21117 0.92536 0.99101 1.02582 0.89821 0.90411 0.90386 0.83511 0.89477 0.89281 0.93298 0.75027 0.91592 0.91593 0.90412 0.90537 0.93684 0.89960 0.83612 0.90487 0.86799 0.77439 0.91134 0.90976 0.88813 0.92368 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.00 71.23 0.71 0.05 16 2 C -0.06 -0.73 5.89 -19.81 -0.12 -0.85 16 3 C -0.14 -1.71 9.34 22.23 0.21 -1.50 16 4 C -0.05 -0.86 5.91 -19.61 -0.12 -0.98 16 5 C -0.12 -1.66 9.62 71.24 0.69 -0.98 16 6 C -0.16 -3.04 5.63 -20.09 -0.11 -3.15 16 7 C 0.57 12.49 4.19 86.79 0.36 12.85 16 8 O -0.58 -17.32 17.10 -3.88 -0.07 -17.39 16 9 N -0.71 -11.74 5.55 -465.97 -2.58 -14.32 16 10 C 0.13 2.06 5.67 86.38 0.49 2.55 16 11 C -0.12 -1.84 5.59 30.59 0.17 -1.67 16 12 C 0.06 1.21 5.68 86.30 0.49 1.70 16 13 N -0.69 -19.08 6.13 -517.94 -3.17 -22.25 16 14 C 0.06 1.82 6.17 85.55 0.53 2.35 16 15 C 0.45 20.04 7.82 87.65 0.69 20.73 16 16 O -0.61 -33.93 15.78 -3.07 -0.05 -33.98 16 17 N -0.59 -27.75 5.09 -306.98 -1.56 -29.32 16 18 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 19 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 21 N -0.93 -56.29 13.96 21.66 0.30 -55.99 16 22 Si 0.96 38.62 27.74 68.60 1.90 40.53 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 26 C -0.05 -0.88 5.91 -19.61 -0.12 -0.99 16 27 C -0.12 -1.72 9.62 71.24 0.69 -1.04 16 28 C -0.14 -1.74 9.34 22.23 0.21 -1.53 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.32 8.08 -2.38 -0.02 0.31 16 31 H 0.08 0.32 8.08 -2.39 -0.02 0.30 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.05 0.88 7.08 -2.39 -0.02 0.87 16 36 H 0.41 5.20 8.46 -92.71 -0.78 4.42 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.35 10.16 8.43 -89.70 -0.76 9.40 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 47 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 50 H 0.06 0.93 7.07 -2.39 -0.02 0.91 16 51 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -82.92 424.64 -0.32 -83.23 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -1.18 Total: 40.78 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.09 Total: 8.70 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -7.02 Total: -121.87 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.11 Total: -51.37 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.53 kcal Total: -82.92 -0.32 -83.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175440303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.218 kcal (2) G-P(sol) polarization free energy of solvation -82.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds