Wall clock time and date at job start Wed Apr 1 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99617 * 2 1 4 4 C 1.38495 * 119.98591 * 359.97438 * 3 2 1 5 5 C 1.39490 * 119.79270 * 180.02562 * 4 3 2 6 6 C 1.47863 * 120.11572 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99933 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46695 * 180.02562 * 9 8 6 11 11 N 1.46903 * 109.46832 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99959 * 294.30222 * 11 10 9 13 13 C 1.53243 * 109.34080 * 172.74724 * 12 11 10 14 14 N 1.47076 * 108.52281 * 53.82537 * 13 12 11 15 15 C 1.36939 * 120.88099 * 128.83561 * 14 13 12 16 16 H 1.07997 * 119.99912 * 206.56577 * 15 14 13 17 17 C 1.38806 * 119.99651 * 26.57007 * 15 14 13 18 18 N 1.31619 * 120.00421 * 17.01246 * 17 15 14 19 19 Si 1.86802 * 120.00032 * 197.01369 * 17 15 14 20 20 H 1.48503 * 109.46953 * 89.99551 * 19 17 15 21 21 H 1.48496 * 109.47677 * 210.00084 * 19 17 15 22 22 H 1.48498 * 109.47078 * 330.00431 * 19 17 15 23 23 C 1.47076 * 118.23842 * 308.82130 * 14 13 12 24 24 C 1.46904 * 110.99966 * 169.99907 * 11 10 9 25 25 C 1.39598 * 119.76521 * 359.97438 * 5 4 3 26 26 C 1.37961 * 119.96857 * 0.26354 * 25 5 4 27 27 C 1.38292 * 120.20289 * 359.50515 * 26 25 5 28 28 C 1.50706 * 119.88025 * 180.24035 * 27 26 25 29 29 H 1.08995 * 109.47454 * 299.99841 * 1 2 3 30 30 H 1.09001 * 109.47704 * 60.00485 * 1 2 3 31 31 H 1.09008 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.09961 * 0.02562 * 4 3 2 33 33 H 0.96997 * 119.99995 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47263 * 299.99855 * 9 8 6 35 35 H 1.08993 * 109.47294 * 60.00508 * 9 8 6 36 36 H 1.08999 * 109.47363 * 299.99772 * 10 9 8 37 37 H 1.08998 * 109.47600 * 60.00113 * 10 9 8 38 38 H 1.09006 * 109.49253 * 292.70345 * 12 11 10 39 39 H 1.09000 * 109.49283 * 52.78486 * 12 11 10 40 40 H 1.09006 * 109.62364 * 294.12096 * 13 12 11 41 41 H 1.08996 * 109.63013 * 173.53865 * 13 12 11 42 42 H 0.97002 * 120.00318 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.62695 * 291.46921 * 23 14 13 44 44 H 1.09002 * 109.79125 * 170.98873 * 23 14 13 45 45 H 1.08996 * 109.49310 * 307.21058 * 24 11 10 46 46 H 1.08995 * 109.49341 * 67.29826 * 24 11 10 47 47 H 1.07999 * 120.01562 * 179.97438 * 25 5 4 48 48 H 1.07997 * 119.89761 * 179.74744 * 26 25 5 49 49 H 1.09001 * 109.46757 * 270.23412 * 28 27 26 50 50 H 1.09000 * 109.46956 * 30.22534 * 28 27 26 51 51 H 1.08996 * 109.46913 * 150.23133 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3723 -0.0005 5 6 1.9286 3.6131 -0.0011 6 6 1.1299 4.8574 -0.0022 7 8 -0.0843 4.8002 -0.0022 8 7 1.7482 6.0550 -0.0033 9 6 0.9568 7.2879 -0.0050 10 6 1.8953 8.4962 -0.0065 11 7 1.1019 9.7325 -0.0076 12 6 0.3421 9.8693 -1.2574 13 6 -0.6055 11.0685 -1.1467 14 7 0.1805 12.2513 -0.7639 15 6 0.0840 13.4188 -1.4729 16 1 0.9131 14.1106 -1.4895 17 6 -1.0796 13.7131 -2.1702 18 7 -2.1927 13.0666 -1.8959 19 14 -1.0657 15.0269 -3.4981 20 1 -0.7344 14.4056 -4.8056 21 1 -2.4045 15.6643 -3.5780 22 1 -0.0469 16.0551 -3.1665 23 6 1.0726 12.1469 0.4008 24 6 1.9542 10.9053 0.2291 25 6 3.3232 3.6758 -0.0005 26 6 4.0654 2.5128 -0.0050 27 6 3.4321 1.2834 0.0004 28 6 4.2500 0.0176 0.0010 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2126 2.3173 -0.0005 33 1 2.7170 6.1006 -0.0036 34 1 0.3285 7.3151 -0.8952 35 1 0.3278 7.3171 0.8847 36 1 2.5240 8.4692 0.8835 37 1 2.5241 8.4668 -0.8964 38 1 1.0317 10.0261 -2.0870 39 1 -0.2373 8.9627 -1.4320 40 1 -1.3609 10.8692 -0.3865 41 1 -1.0872 11.2446 -2.1084 42 1 -3.0059 13.2725 -2.3829 43 1 0.4785 12.0513 1.3096 44 1 1.7004 13.0356 0.4656 45 1 2.5438 10.7501 1.1326 46 1 2.6212 11.0477 -0.6211 47 1 3.8209 4.6343 -0.0014 48 1 5.1442 2.5627 -0.0087 49 1 4.4473 -0.2879 -1.0266 50 1 5.1947 0.1957 0.5147 51 1 3.6997 -0.7703 0.5151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265261627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:50 Heat of formation + Delta-G solvation = -13.681117 kcal Electronic energy + Delta-G solvation = -29724.312101 eV Core-core repulsion = 25624.872063 eV Total energy + Delta-G solvation = -4099.440038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.89722 -39.63589 -38.24642 -37.56672 -35.48683 -34.04967 -33.28196 -31.47629 -30.60805 -29.94780 -29.18987 -28.02650 -27.36067 -25.74004 -23.46080 -22.88829 -22.61214 -22.41099 -21.36068 -20.69947 -19.13288 -18.72128 -17.00408 -16.79937 -16.62203 -16.21132 -16.00095 -15.68072 -15.59430 -14.95741 -14.56913 -14.53046 -14.28015 -14.21367 -13.97024 -13.83318 -13.62275 -13.46690 -13.43064 -12.93402 -12.70629 -12.60704 -12.51568 -12.36486 -11.85665 -11.62471 -11.52718 -11.50195 -11.44268 -11.29589 -11.05758 -10.75682 -10.45612 -10.32455 -10.13230 -10.05570 -9.75372 -9.62657 -9.31815 -9.11290 -8.58415 -8.50569 -7.90270 -6.66851 -5.77298 -3.18883 0.45553 0.96985 2.60236 2.80871 2.93500 3.38191 3.44931 3.46353 3.49662 4.22122 4.35082 4.40741 4.50943 4.59852 4.63860 4.69715 4.81360 4.85137 4.96967 5.06895 5.14516 5.15873 5.21719 5.26670 5.36703 5.39778 5.42011 5.49620 5.69275 5.78052 5.81103 5.89455 5.89692 5.95352 5.97938 6.04369 6.10002 6.18831 6.24214 6.30586 6.33802 6.53245 6.68123 6.91295 6.92075 7.23391 7.29782 7.53106 7.63257 7.69351 7.81551 8.02722 8.43964 9.21707 9.85072 10.43478 11.31463 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.001692 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.882913 B =16548.266867 C =17144.646683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.313 6.313 3 C 0.118 3.882 4 C -0.146 4.146 5 C -0.098 4.098 6 C 0.556 3.444 7 O -0.533 6.533 8 N -0.722 5.722 9 C 0.120 3.880 10 C 0.045 3.955 11 N -0.529 5.529 12 C 0.031 3.969 13 C 0.177 3.823 14 N -0.595 5.595 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.148 3.852 24 C 0.046 3.954 25 C -0.119 4.119 26 C -0.091 4.091 27 C -0.095 4.095 28 C -0.108 4.108 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.028 0.972 47 H 0.129 0.871 48 H 0.136 0.864 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -26.558 4.753 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.073 3.927 4 C -0.166 4.166 5 C -0.101 4.101 6 C 0.343 3.657 7 O -0.411 6.411 8 N -0.374 5.374 9 C -0.003 4.003 10 C -0.084 4.084 11 N -0.254 5.254 12 C -0.098 4.098 13 C 0.051 3.949 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.022 3.978 24 C -0.083 4.083 25 C -0.138 4.138 26 C -0.109 4.109 27 C -0.095 4.095 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.161 0.839 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.147 0.853 48 H 0.154 0.846 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.350 -26.718 5.063 29.867 hybrid contribution 0.717 0.950 -1.383 1.825 sum 13.067 -25.768 3.680 29.126 Atomic orbital electron populations 1.23135 0.77905 1.04155 1.01954 1.86058 1.21684 1.26230 1.88706 1.18705 0.91726 0.84299 0.97997 1.21340 1.01082 0.90723 1.03420 1.19722 0.93530 0.93080 1.03748 1.18206 0.87485 0.83342 0.76712 1.90797 1.13629 1.87283 1.49343 1.45860 1.10501 1.05849 1.75156 1.21431 0.93962 0.81256 1.03630 1.22198 0.94989 0.90627 1.00624 1.61876 1.26113 1.00729 1.36708 1.23014 0.97255 1.01052 0.88515 1.20874 0.90513 0.82323 1.01146 1.44122 1.48908 1.09448 1.29384 1.19200 0.97321 0.97618 1.24104 0.91613 1.25032 0.94746 0.98715 1.01256 1.70029 0.98985 1.44203 1.41475 0.86281 0.76865 0.81323 0.82238 1.21525 1.21735 1.20484 1.20971 0.92342 0.93561 0.90968 1.22629 0.94906 0.91828 0.98945 1.21204 0.92511 0.98939 1.01155 1.20830 1.00129 0.90647 0.99299 1.19483 0.90621 0.96515 1.02927 1.20675 0.98860 0.94350 1.02613 0.92305 0.92279 0.87978 0.83943 0.76677 0.90853 0.90196 0.90825 0.94942 0.95575 0.91763 0.95422 0.89288 0.93583 0.95604 0.92549 0.91958 0.95336 0.85339 0.84606 0.91005 0.91351 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.76 9.52 -19.46 -0.19 -2.94 16 3 C 0.12 1.12 6.65 -39.27 -0.26 0.86 16 4 C -0.15 -1.55 8.58 -39.02 -0.33 -1.88 16 5 C -0.10 -1.04 5.87 -104.98 -0.62 -1.66 16 6 C 0.56 7.24 7.77 -12.32 -0.10 7.15 16 7 O -0.53 -9.00 16.35 5.32 0.09 -8.91 16 8 N -0.72 -7.96 5.51 -61.25 -0.34 -8.30 16 9 C 0.12 1.61 5.61 -4.04 -0.02 1.58 16 10 C 0.04 0.59 5.08 -3.82 -0.02 0.57 16 11 N -0.53 -9.16 4.63 -234.31 -1.08 -10.24 16 12 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 13 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 14 N -0.60 -15.13 3.04 -172.02 -0.52 -15.65 16 15 C -0.25 -6.98 9.63 -15.06 -0.15 -7.13 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 18 N -0.90 -26.44 11.15 55.49 0.62 -25.82 16 19 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 24 C 0.05 0.81 5.62 -3.70 -0.02 0.78 16 25 C -0.12 -0.94 9.54 -39.18 -0.37 -1.32 16 26 C -0.09 -0.64 9.68 -39.66 -0.38 -1.03 16 27 C -0.09 -0.77 5.90 -104.39 -0.62 -1.38 16 28 C -0.11 -0.64 9.78 36.01 0.35 -0.29 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.10 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.14 1.52 5.88 -52.49 -0.31 1.21 16 33 H 0.40 3.14 6.50 -40.82 -0.27 2.87 16 34 H 0.07 1.11 6.40 -51.93 -0.33 0.77 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 37 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 2.40 6.12 -51.93 -0.32 2.09 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 45 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.13 0.70 6.40 -52.49 -0.34 0.36 16 48 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 51 H 0.07 0.46 7.52 -51.93 -0.39 0.07 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -33.58 404.79 -10.13 -43.71 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.08 Total: -0.05 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.70 Total: 5.34 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.33 Total: -60.02 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.10 Total: -11.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.58 -10.13 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265261627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.030 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds