Wall clock time and date at job start Wed Apr 1 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35912 * 116.99617 * 2 1 4 4 C 1.38495 * 119.98591 * 359.97438 * 3 2 1 5 5 C 1.39490 * 119.79270 * 180.02562 * 4 3 2 6 6 C 1.47863 * 120.11572 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99696 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99933 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46695 * 180.02562 * 9 8 6 11 11 N 1.46903 * 109.46832 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99959 * 294.30222 * 11 10 9 13 13 C 1.53243 * 109.34080 * 172.74724 * 12 11 10 14 14 N 1.47076 * 108.52281 * 53.82537 * 13 12 11 15 15 C 1.36939 * 120.88099 * 128.83561 * 14 13 12 16 16 H 1.07997 * 119.99912 * 206.56577 * 15 14 13 17 17 C 1.38806 * 119.99651 * 26.57007 * 15 14 13 18 18 N 1.31619 * 120.00421 * 17.01246 * 17 15 14 19 19 Si 1.86802 * 120.00032 * 197.01369 * 17 15 14 20 20 H 1.48503 * 109.46953 * 89.99551 * 19 17 15 21 21 H 1.48496 * 109.47677 * 210.00084 * 19 17 15 22 22 H 1.48498 * 109.47078 * 330.00431 * 19 17 15 23 23 C 1.47076 * 118.23842 * 308.82130 * 14 13 12 24 24 C 1.46904 * 110.99966 * 169.99907 * 11 10 9 25 25 C 1.39598 * 119.76521 * 359.97438 * 5 4 3 26 26 C 1.37961 * 119.96857 * 0.26354 * 25 5 4 27 27 C 1.38292 * 120.20289 * 359.50515 * 26 25 5 28 28 C 1.50706 * 119.88025 * 180.24035 * 27 26 25 29 29 H 1.08995 * 109.47454 * 299.99841 * 1 2 3 30 30 H 1.09001 * 109.47704 * 60.00485 * 1 2 3 31 31 H 1.09008 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.09961 * 0.02562 * 4 3 2 33 33 H 0.96997 * 119.99995 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.47263 * 299.99855 * 9 8 6 35 35 H 1.08993 * 109.47294 * 60.00508 * 9 8 6 36 36 H 1.08999 * 109.47363 * 299.99772 * 10 9 8 37 37 H 1.08998 * 109.47600 * 60.00113 * 10 9 8 38 38 H 1.09006 * 109.49253 * 292.70345 * 12 11 10 39 39 H 1.09000 * 109.49283 * 52.78486 * 12 11 10 40 40 H 1.09006 * 109.62364 * 294.12096 * 13 12 11 41 41 H 1.08996 * 109.63013 * 173.53865 * 13 12 11 42 42 H 0.97002 * 120.00318 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.62695 * 291.46921 * 23 14 13 44 44 H 1.09002 * 109.79125 * 170.98873 * 23 14 13 45 45 H 1.08996 * 109.49310 * 307.21058 * 24 11 10 46 46 H 1.08995 * 109.49341 * 67.29826 * 24 11 10 47 47 H 1.07999 * 120.01562 * 179.97438 * 25 5 4 48 48 H 1.07997 * 119.89761 * 179.74744 * 26 25 5 49 49 H 1.09001 * 109.46757 * 270.23412 * 28 27 26 50 50 H 1.09000 * 109.46956 * 30.22534 * 28 27 26 51 51 H 1.08996 * 109.46913 * 150.23133 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3723 -0.0005 5 6 1.9286 3.6131 -0.0011 6 6 1.1299 4.8574 -0.0022 7 8 -0.0843 4.8002 -0.0022 8 7 1.7482 6.0550 -0.0033 9 6 0.9568 7.2879 -0.0050 10 6 1.8953 8.4962 -0.0065 11 7 1.1019 9.7325 -0.0076 12 6 0.3421 9.8693 -1.2574 13 6 -0.6055 11.0685 -1.1467 14 7 0.1805 12.2513 -0.7639 15 6 0.0840 13.4188 -1.4729 16 1 0.9131 14.1106 -1.4895 17 6 -1.0796 13.7131 -2.1702 18 7 -2.1927 13.0666 -1.8959 19 14 -1.0657 15.0269 -3.4981 20 1 -0.7344 14.4056 -4.8056 21 1 -2.4045 15.6643 -3.5780 22 1 -0.0469 16.0551 -3.1665 23 6 1.0726 12.1469 0.4008 24 6 1.9542 10.9053 0.2291 25 6 3.3232 3.6758 -0.0005 26 6 4.0654 2.5128 -0.0050 27 6 3.4321 1.2834 0.0004 28 6 4.2500 0.0176 0.0010 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2126 2.3173 -0.0005 33 1 2.7170 6.1006 -0.0036 34 1 0.3285 7.3151 -0.8952 35 1 0.3278 7.3171 0.8847 36 1 2.5240 8.4692 0.8835 37 1 2.5241 8.4668 -0.8964 38 1 1.0317 10.0261 -2.0870 39 1 -0.2373 8.9627 -1.4320 40 1 -1.3609 10.8692 -0.3865 41 1 -1.0872 11.2446 -2.1084 42 1 -3.0059 13.2725 -2.3829 43 1 0.4785 12.0513 1.3096 44 1 1.7004 13.0356 0.4656 45 1 2.5438 10.7501 1.1326 46 1 2.6212 11.0477 -0.6211 47 1 3.8209 4.6343 -0.0014 48 1 5.1442 2.5627 -0.0087 49 1 4.4473 -0.2879 -1.0266 50 1 5.1947 0.1957 0.5147 51 1 3.6997 -0.7703 0.5151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265261627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:48 Heat of formation + Delta-G solvation = -37.013420 kcal Electronic energy + Delta-G solvation = -29725.323866 eV Core-core repulsion = 25624.872063 eV Total energy + Delta-G solvation = -4100.451802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63562 -40.54557 -39.71161 -38.24920 -36.90014 -35.52234 -33.99702 -33.25606 -31.65708 -31.29314 -30.44124 -28.60138 -28.33228 -27.19500 -25.03723 -24.30599 -23.60720 -23.22505 -22.57302 -21.56540 -20.83594 -19.54916 -18.72330 -17.76843 -17.41169 -17.12412 -16.87309 -16.71454 -16.61248 -16.34900 -15.99743 -15.78536 -15.42102 -15.27321 -15.11209 -14.95606 -14.87278 -14.68881 -14.43092 -14.37282 -14.10880 -13.23654 -13.19473 -13.04269 -13.01806 -12.97484 -12.84119 -12.63323 -12.58483 -12.35126 -12.23489 -12.18724 -12.08723 -12.03898 -11.86152 -11.56535 -11.44658 -11.14110 -10.59901 -10.26307 -9.88390 -9.30856 -9.22688 -8.69499 -7.88069 -5.33148 -0.27382 0.34259 1.46079 1.47261 1.56506 1.74091 1.91449 2.29609 2.50234 2.76011 3.05743 3.27315 3.55388 3.67482 3.75239 3.84343 3.91163 4.05228 4.09025 4.15081 4.29171 4.30376 4.34502 4.34783 4.44824 4.52806 4.54403 4.64181 4.68748 4.70458 4.72501 4.75433 4.81182 4.86816 4.90950 4.97538 5.03859 5.16566 5.19952 5.22695 5.25119 5.31150 5.37191 5.42048 5.60698 5.66798 5.70257 6.13081 6.21939 6.28511 6.36503 6.44082 7.09754 7.12193 7.83414 8.37582 9.18786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.001692 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.882913 B =16548.266867 C =17144.646683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.103 3.897 4 C -0.164 4.164 5 C -0.119 4.119 6 C 0.553 3.447 7 O -0.584 6.584 8 N -0.704 5.704 9 C 0.129 3.871 10 C 0.054 3.946 11 N -0.543 5.543 12 C 0.050 3.950 13 C 0.184 3.816 14 N -0.614 5.614 15 C -0.262 4.262 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.141 3.859 24 C 0.058 3.942 25 C -0.110 4.110 26 C -0.086 4.086 27 C -0.097 4.097 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.074 0.926 40 H -0.005 1.005 41 H 0.055 0.945 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.030 0.970 47 H 0.158 0.842 48 H 0.173 0.827 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.794 -27.476 4.962 33.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.058 3.942 4 C -0.184 4.184 5 C -0.122 4.122 6 C 0.342 3.658 7 O -0.465 6.465 8 N -0.357 5.357 9 C 0.004 3.996 10 C -0.074 4.074 11 N -0.268 5.268 12 C -0.080 4.080 13 C 0.058 3.942 14 N -0.338 5.338 15 C -0.392 4.392 16 H 0.089 0.911 17 C -0.250 4.250 18 N -0.584 5.584 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.191 1.191 23 C 0.015 3.985 24 C -0.071 4.071 25 C -0.128 4.128 26 C -0.103 4.103 27 C -0.098 4.098 28 C -0.163 4.163 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.048 0.952 47 H 0.176 0.824 48 H 0.190 0.810 49 H 0.097 0.903 50 H 0.109 0.891 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.548 -27.644 5.293 32.650 hybrid contribution -0.531 1.168 -1.367 1.875 sum 16.017 -26.475 3.926 31.191 Atomic orbital electron populations 1.23294 0.76960 1.05637 1.01639 1.86040 1.22734 1.26078 1.88758 1.18916 0.92570 0.84056 0.98652 1.21335 1.00717 0.91601 1.04705 1.19623 0.94702 0.91653 1.06258 1.18655 0.87093 0.84448 0.75622 1.90769 1.15919 1.87993 1.51817 1.45617 1.11293 1.04543 1.74231 1.21177 0.94103 0.82521 1.01770 1.22193 0.94450 0.87829 1.02884 1.61747 1.27433 1.02539 1.35126 1.22613 0.96660 0.98929 0.89773 1.20606 0.91057 0.84353 0.98179 1.44407 1.49482 1.09110 1.30813 1.19569 0.97306 0.98267 1.24105 0.91145 1.25836 0.94442 1.01216 1.03478 1.70202 0.99457 1.46084 1.42641 0.85227 0.76656 0.78975 0.79358 1.21264 1.22295 1.19070 1.21172 0.92134 0.96251 0.88917 1.22476 0.93906 0.89830 1.00844 1.21526 0.91112 1.00799 0.99396 1.21258 1.01827 0.89606 0.97650 1.19932 0.90194 0.98124 1.01525 1.20730 0.99312 0.93035 1.03273 0.92614 0.92696 0.85546 0.85438 0.74416 0.93047 0.92014 0.87656 0.93267 0.95771 0.90785 0.98657 0.92661 0.94144 0.96764 0.91779 0.87975 0.95194 0.82426 0.80998 0.90267 0.89140 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -5.65 9.52 -92.56 -0.88 -6.53 16 3 C 0.10 1.93 6.65 22.47 0.15 2.07 16 4 C -0.16 -3.57 8.58 22.63 0.19 -3.37 16 5 C -0.12 -2.46 5.87 -20.10 -0.12 -2.58 16 6 C 0.55 14.38 7.77 86.79 0.67 15.05 16 7 O -0.58 -20.71 16.35 -3.89 -0.06 -20.78 16 8 N -0.70 -14.27 5.51 -465.96 -2.57 -16.84 16 9 C 0.13 3.28 5.61 86.38 0.48 3.77 16 10 C 0.05 1.25 5.08 86.30 0.44 1.68 16 11 N -0.54 -17.77 4.63 -895.23 -4.14 -21.92 16 12 C 0.05 1.93 5.46 86.38 0.47 2.41 16 13 C 0.18 9.32 5.42 86.35 0.47 9.79 16 14 N -0.61 -31.63 3.04 -698.13 -2.12 -33.75 16 15 C -0.26 -14.63 9.63 84.03 0.81 -13.82 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 17 C -0.05 -3.11 4.94 84.86 0.42 -2.69 16 18 N -0.94 -57.02 11.15 21.65 0.24 -56.78 16 19 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 C 0.14 5.83 6.69 86.35 0.58 6.41 16 24 C 0.06 1.86 5.62 86.38 0.49 2.34 16 25 C -0.11 -1.40 9.54 22.53 0.21 -1.19 16 26 C -0.09 -0.89 9.68 22.22 0.21 -0.68 16 27 C -0.10 -1.36 5.90 -19.71 -0.12 -1.47 16 28 C -0.11 -0.98 9.78 71.24 0.70 -0.29 16 29 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 30 H 0.05 0.74 7.66 -2.39 -0.02 0.72 16 31 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.13 3.02 5.88 -2.91 -0.02 3.01 16 33 H 0.42 5.07 6.50 -92.71 -0.60 4.46 16 34 H 0.05 1.55 6.40 -2.39 -0.02 1.54 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.84 7.97 -2.39 -0.02 1.82 16 37 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 40 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.06 3.14 6.12 -2.39 -0.01 3.12 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 45 H 0.10 2.49 7.99 -2.39 -0.02 2.47 16 46 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.16 0.98 6.40 -2.91 -0.02 0.96 16 48 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.09 0.44 8.08 -2.39 -0.02 0.42 16 51 H 0.06 0.71 7.52 -2.39 -0.02 0.70 16 Total: -1.00 -77.28 404.79 0.00 -77.27 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.33 Total: 13.01 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.18 Total: 18.80 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -8.59 Total: -129.28 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.95 Total: -27.30 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.28 0.00 -77.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265261627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.261 kcal (2) G-P(sol) polarization free energy of solvation -77.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds