Wall clock time and date at job start Wed Apr 1 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51266 * 120.84856 * 2 1 4 4 C 1.53226 * 108.69545 * 231.26790 * 3 2 1 5 5 C 1.53004 * 109.38160 * 305.66346 * 4 3 2 6 6 C 1.50704 * 109.39818 * 183.50756 * 5 4 3 7 7 O 1.21278 * 119.99991 * 265.12517 * 6 5 4 8 8 N 1.34777 * 119.99893 * 85.12042 * 6 5 4 9 9 C 1.47866 * 126.92403 * 4.99882 * 8 6 5 10 10 C 1.56028 * 105.10810 * 181.91274 * 9 8 6 11 11 H 1.09006 * 116.25229 * 159.69998 * 10 9 8 12 12 C 1.57077 * 99.59997 * 32.80031 * 10 9 8 13 13 C 1.49280 * 126.92911 * 184.67605 * 8 6 5 14 14 H 1.09002 * 116.12189 * 16.02244 * 13 8 6 15 15 C 1.55470 * 104.39134 * 246.97858 * 13 8 6 16 16 N 1.48291 * 105.13352 * 288.93038 * 15 13 8 17 17 C 1.46899 * 111.00125 * 122.46869 * 16 15 13 18 18 C 1.50699 * 109.47289 * 183.49248 * 17 16 15 19 19 O 1.21293 * 120.00069 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00037 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99855 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00299 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00285 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46860 * 90.00343 * 25 23 21 27 27 H 1.48501 * 109.47302 * 210.00559 * 25 23 21 28 28 H 1.48494 * 109.47195 * 330.00665 * 25 23 21 29 29 C 1.52955 * 109.98385 * 63.31395 * 5 4 3 30 30 C 1.51265 * 120.84747 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.99993 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99888 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.62628 * 351.08097 * 3 2 1 34 34 H 1.09007 * 109.62635 * 111.46483 * 3 2 1 35 35 H 1.08998 * 109.48038 * 65.45119 * 4 3 2 36 36 H 1.09002 * 109.48462 * 185.49133 * 4 3 2 37 37 H 1.09000 * 109.26545 * 303.19396 * 5 4 3 38 38 H 1.09001 * 110.31101 * 300.81380 * 9 8 6 39 39 H 1.08987 * 110.31806 * 62.90154 * 9 8 6 40 40 H 1.08999 * 112.36128 * 64.33904 * 12 10 9 41 41 H 1.09008 * 112.35451 * 191.74527 * 12 10 9 42 42 H 1.08999 * 110.35802 * 169.98265 * 15 13 8 43 43 H 1.08999 * 110.31408 * 47.85938 * 15 13 8 44 44 H 1.09005 * 109.46832 * 303.49679 * 17 16 15 45 45 H 1.08996 * 109.47288 * 63.48855 * 17 16 15 46 46 H 0.97001 * 119.99661 * 359.97438 * 20 18 17 47 47 H 0.97000 * 120.00053 * 179.97438 * 24 23 21 48 48 H 1.09006 * 109.48508 * 176.50629 * 29 5 4 49 49 H 1.09002 * 109.48812 * 56.45991 * 29 5 4 50 50 H 1.09007 * 109.62608 * 248.34702 * 30 2 1 51 51 H 1.08996 * 109.63253 * 8.73081 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1172 1.2547 -1.1322 5 6 3.9805 0.0002 -0.9841 6 6 5.0499 0.0003 -2.0460 7 8 4.8703 -0.5946 -3.0875 8 7 6.2058 0.6615 -1.8382 9 6 6.6269 1.3459 -0.5969 10 6 8.0142 1.9769 -0.9311 11 1 8.3392 2.7950 -0.2882 12 6 7.7944 2.3025 -2.4519 13 6 7.3218 0.8449 -2.8125 14 1 7.0853 0.6416 -3.8569 15 6 8.4996 0.0291 -2.2090 16 7 8.9369 0.8014 -1.0210 17 6 8.8650 -0.0186 0.1957 18 6 9.2335 0.8223 1.3908 19 8 9.5276 1.9898 1.2434 20 7 9.2373 0.2768 2.6232 21 6 9.5720 1.0420 3.7104 22 1 9.8330 2.0817 3.5793 23 6 9.5764 0.4794 4.9809 24 7 9.8968 1.2130 6.0232 25 14 9.1255 -1.3191 5.2077 26 1 10.3500 -2.1531 5.1050 27 1 8.5074 -1.5098 6.5444 28 1 8.1609 -1.7243 4.1540 29 6 3.1142 -1.2514 -1.1353 30 6 2.0856 -1.2987 -0.0006 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.4027 2.1330 -0.1592 34 1 2.5960 1.4203 0.9555 35 1 2.6020 1.2270 -2.0924 36 1 3.7485 2.1419 -1.0836 37 1 4.4488 0.0000 0.0002 38 1 5.9111 2.1242 -0.3324 39 1 6.7224 0.6278 0.2174 40 1 7.0124 3.0457 -2.6081 41 1 8.7221 2.5733 -2.9562 42 1 9.3139 -0.0507 -2.9292 43 1 8.1596 -0.9628 -1.9115 44 1 7.8509 -0.3992 0.3179 45 1 9.5591 -0.8548 0.1119 46 1 9.0024 -0.6569 2.7410 47 1 9.8995 0.8204 6.9102 48 1 3.7461 -2.1385 -1.0904 49 1 2.5965 -1.2216 -2.0940 50 1 2.5986 -1.4192 0.9537 51 1 1.4023 -2.1333 -0.1568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267712245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:50 Heat of formation + Delta-G solvation = -33.082212 kcal Electronic energy + Delta-G solvation = -32069.541964 eV Core-core repulsion = 27969.260631 eV Total energy + Delta-G solvation = -4100.281332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.48902 -40.69113 -39.79401 -38.54543 -36.05486 -35.04466 -33.90551 -33.71012 -32.23844 -31.95929 -30.84364 -28.39860 -27.70654 -26.17643 -25.56035 -24.02708 -23.34696 -21.94349 -21.55106 -21.22308 -20.26970 -19.63802 -19.28726 -18.42901 -17.77621 -17.61257 -17.06214 -16.60798 -16.32835 -16.05600 -15.79025 -15.69569 -15.35834 -14.98166 -14.92277 -14.56066 -14.44171 -14.34020 -14.28742 -13.95890 -13.79139 -13.66302 -13.35391 -13.18592 -13.06157 -12.96399 -12.70218 -12.58497 -12.47081 -12.42553 -12.39672 -12.27446 -12.04417 -12.02861 -11.97624 -11.65729 -11.47618 -11.19052 -10.83375 -10.30452 -10.22020 -9.93013 -9.83660 -9.22507 -8.39664 -5.99545 1.29650 1.34606 1.34895 1.43134 1.48228 1.75945 1.94769 2.22740 2.57879 3.07474 3.16701 3.25127 3.42992 3.52614 3.61221 3.66838 3.76565 3.92798 3.96564 4.02091 4.12384 4.18390 4.22097 4.28271 4.32070 4.36254 4.41824 4.48925 4.55895 4.58700 4.69376 4.71615 4.72317 4.80210 4.89290 4.96366 4.97291 4.97985 5.05708 5.09398 5.13203 5.14234 5.18395 5.28873 5.53839 5.74225 5.74886 5.86423 5.97165 6.01153 6.40720 6.60206 6.89982 7.02033 7.40786 7.96029 8.77529 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008798 B = 0.003663 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.898650 B = 7643.201138 C = 9714.737486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 C -0.083 4.083 4 C -0.096 4.096 5 C -0.101 4.101 6 C 0.536 3.464 7 O -0.576 6.576 8 N -0.616 5.616 9 C 0.064 3.936 10 C 0.059 3.941 11 H 0.126 0.874 12 C -0.120 4.120 13 C 0.109 3.891 14 H 0.134 0.866 15 C 0.031 3.969 16 N -0.509 5.509 17 C 0.038 3.962 18 C 0.457 3.543 19 O -0.598 6.598 20 N -0.592 5.592 21 C -0.322 4.322 22 H 0.062 0.938 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.956 3.044 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.233 1.233 29 C -0.091 4.091 30 C -0.083 4.083 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.387 0.613 47 H 0.278 0.722 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 -5.900 -15.879 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.327 3.673 7 O -0.456 6.456 8 N -0.350 5.350 9 C -0.060 4.060 10 C -0.049 4.049 11 H 0.143 0.857 12 C -0.158 4.158 13 C 0.007 3.993 14 H 0.152 0.848 15 C -0.097 4.097 16 N -0.234 5.234 17 C -0.093 4.093 18 C 0.245 3.755 19 O -0.481 6.481 20 N -0.233 5.233 21 C -0.451 4.451 22 H 0.080 0.920 23 C -0.210 4.210 24 N -0.573 5.573 25 Si 0.777 3.223 26 H -0.185 1.185 27 H -0.201 1.201 28 H -0.157 1.157 29 C -0.129 4.129 30 C -0.120 4.120 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.131 0.869 46 H 0.222 0.778 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.305 -5.310 -16.364 23.027 hybrid contribution -0.619 -1.026 1.067 1.605 sum -15.924 -6.336 -15.298 22.973 Atomic orbital electron populations 1.23800 0.94794 1.02644 1.01832 1.22050 0.95511 0.95823 1.00129 1.20800 0.97280 0.95373 0.98509 1.21397 0.96850 0.95450 0.99649 1.21337 0.94433 0.98715 0.97699 1.20731 0.81619 0.76742 0.88249 1.90661 1.79974 1.45059 1.29908 1.49421 1.17100 1.53292 1.15186 1.23293 0.98414 0.97504 0.86761 1.24757 0.87433 0.94476 0.98205 0.85675 1.23977 1.02796 0.95316 0.93699 1.24115 0.84640 0.95917 0.94668 0.84826 1.23667 0.97208 0.95888 0.92985 1.64746 1.50180 1.06933 1.01497 1.22171 1.02186 0.96148 0.88821 1.20544 0.82281 0.88550 0.84149 1.90506 1.52984 1.19073 1.85562 1.42045 1.63079 1.12158 1.06023 1.18989 1.44836 0.95727 0.85522 0.92040 1.25998 0.96757 1.04166 0.94082 1.69792 1.48696 1.39038 0.99817 0.85481 0.79901 0.77422 0.79478 1.18488 1.20118 1.15667 1.21304 0.96738 0.95558 0.99286 1.20820 0.97323 0.95403 0.98494 0.87666 0.87730 0.89807 0.90446 0.91858 0.90859 0.88783 0.89652 0.91064 0.88774 0.87763 0.87487 0.92209 0.90773 0.86911 0.77831 0.91233 0.91933 0.91938 0.90483 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 13.99 67.78 0.95 -1.82 16 2 C -0.14 -2.18 5.36 -16.13 -0.09 -2.26 16 3 C -0.08 -1.28 6.02 30.10 0.18 -1.10 16 4 C -0.10 -1.68 5.21 30.67 0.16 -1.52 16 5 C -0.10 -2.02 2.01 -11.55 -0.02 -2.04 16 6 C 0.54 13.28 6.99 87.66 0.61 13.89 16 7 O -0.58 -17.84 16.54 -3.02 -0.05 -17.89 16 8 N -0.62 -14.01 2.95 -768.73 -2.27 -16.28 16 9 C 0.06 1.53 5.21 87.17 0.45 1.99 16 10 C 0.06 1.61 4.19 46.85 0.20 1.81 16 11 H 0.13 4.29 6.38 -2.38 -0.02 4.27 16 12 C -0.12 -2.41 6.82 33.58 0.23 -2.18 16 13 C 0.11 2.26 5.21 46.86 0.24 2.51 16 14 H 0.13 2.60 8.07 -2.39 -0.02 2.58 16 15 C 0.03 0.67 6.27 86.88 0.54 1.21 16 16 N -0.51 -14.29 5.15 -845.30 -4.36 -18.64 16 17 C 0.04 1.14 4.65 85.56 0.40 1.53 16 18 C 0.46 19.20 7.46 87.66 0.65 19.85 16 19 O -0.60 -30.04 13.61 -3.07 -0.04 -30.08 16 20 N -0.59 -26.46 5.09 -306.99 -1.56 -28.03 16 21 C -0.32 -17.97 10.16 84.04 0.85 -17.11 16 22 H 0.06 4.08 7.39 -2.91 -0.02 4.06 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.93 -54.72 13.96 21.66 0.30 -54.42 16 25 Si 0.96 37.76 27.74 68.60 1.90 39.66 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 29 C -0.09 -1.76 4.69 30.65 0.14 -1.62 16 30 C -0.08 -1.34 6.03 30.10 0.18 -1.16 16 31 H 0.11 1.31 7.92 -2.91 -0.02 1.28 16 32 H 0.10 1.31 7.92 -2.91 -0.02 1.28 16 33 H 0.08 1.12 7.89 -2.39 -0.02 1.10 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.23 7.73 -2.39 -0.02 1.22 16 37 H 0.09 1.83 7.45 -2.39 -0.02 1.81 16 38 H 0.09 1.85 7.73 -2.39 -0.02 1.84 16 39 H 0.07 1.85 5.20 -2.39 -0.01 1.84 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.32 7.62 -2.39 -0.02 1.30 16 44 H 0.07 1.96 5.64 -2.38 -0.01 1.95 16 45 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.39 14.57 5.76 -92.71 -0.53 14.03 16 47 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.06 1.37 7.99 -2.39 -0.02 1.35 16 50 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 Total: -1.00 -72.12 393.55 0.43 -71.69 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: 0.34 Total: 42.15 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 6.16 Total: 11.84 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -7.89 Total: -117.36 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.09 Total: -47.98 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -72.12 0.43 -71.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267712245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds