Wall clock time and date at job start Wed Apr 1 2020 04:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.84942 * 2 1 4 4 C 1.37935 * 120.14550 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.85095 * 0.02562 * 4 3 2 6 6 C 1.47852 * 120.14434 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99884 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00021 * 359.97438 * 6 5 4 9 9 C 1.46495 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47252 * 325.00508 * 9 8 6 11 11 C 1.53000 * 109.46997 * 85.00023 * 9 8 6 12 12 C 1.53002 * 109.47530 * 205.00424 * 9 8 6 13 13 C 1.53002 * 109.47102 * 64.99753 * 12 9 8 14 14 N 1.46896 * 109.47087 * 180.02562 * 13 12 9 15 15 C 1.46896 * 111.00127 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47446 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99395 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00001 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00238 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99946 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99903 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47183 * 59.99859 * 23 21 19 25 25 H 1.48499 * 109.47072 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46987 * 299.99888 * 23 21 19 27 27 C 1.39557 * 119.71216 * 359.71134 * 5 4 3 28 28 C 1.37979 * 119.85073 * 0.54115 * 27 5 4 29 29 C 1.50703 * 119.92827 * 179.75190 * 28 27 5 30 30 H 1.08999 * 109.47116 * 270.02321 * 1 2 3 31 31 H 1.08998 * 109.47015 * 30.02698 * 1 2 3 32 32 H 1.09002 * 109.46446 * 150.02262 * 1 2 3 33 33 H 1.08005 * 119.92858 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.07935 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99849 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47226 * 300.00077 * 11 9 8 37 37 H 1.09007 * 109.46660 * 60.00397 * 11 9 8 38 38 H 1.09000 * 109.47268 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.47055 * 185.00003 * 12 9 8 40 40 H 1.09004 * 109.46809 * 304.99915 * 12 9 8 41 41 H 1.08997 * 109.46979 * 300.00724 * 13 12 9 42 42 H 1.09001 * 109.46721 * 60.00113 * 13 12 9 43 43 H 1.00906 * 110.99998 * 303.95583 * 14 13 12 44 44 H 1.09005 * 109.46880 * 299.99884 * 15 14 13 45 45 H 1.09005 * 109.47136 * 59.99800 * 15 14 13 46 46 H 0.96997 * 119.99703 * 359.97438 * 18 16 15 47 47 H 0.97004 * 120.00300 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.07665 * 180.29572 * 27 5 4 49 49 H 1.09002 * 109.47152 * 269.72665 * 29 28 27 50 50 H 1.09001 * 109.46980 * 149.72766 * 29 28 27 51 51 H 1.09004 * 109.47113 * 29.72747 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 0.0005 5 6 4.2762 0.0002 0.0005 6 6 5.7547 0.0003 0.0017 7 8 6.3625 -1.0524 0.0012 8 7 6.4285 1.1674 0.0022 9 6 7.8935 1.1676 0.0028 10 1 8.2567 0.3256 0.5921 11 6 8.4040 1.0422 -1.4341 12 6 8.4033 2.4747 0.6130 13 6 7.9979 2.5418 2.0868 14 7 8.4868 3.7971 2.6725 15 6 8.1158 3.8961 4.0904 16 6 8.6327 5.1940 4.6555 17 8 9.2498 5.9608 3.9468 18 7 8.4100 5.5021 5.9485 19 6 8.8798 6.6832 6.4625 20 1 9.4286 7.3664 5.8313 21 6 8.6498 7.0011 7.7954 22 7 7.9816 6.1700 8.5633 23 14 9.2905 8.6099 8.4958 24 1 8.6960 9.7469 7.7481 25 1 8.9159 8.7096 9.9293 26 1 10.7693 8.6518 8.3670 27 6 3.5755 -1.2067 0.0061 28 6 2.1957 -1.1998 0.0003 29 6 1.4373 -2.5020 0.0006 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6522 2.1335 -0.0004 34 1 4.1116 2.1446 0.0010 35 1 5.9435 2.0075 0.0022 36 1 8.0409 0.1110 -1.8687 37 1 8.0408 1.8842 -2.0234 38 1 9.4940 1.0418 -1.4337 39 1 9.4896 2.5138 0.5327 40 1 7.9688 3.3192 0.0779 41 1 6.9116 2.5026 2.1670 42 1 8.4324 1.6973 2.6218 43 1 9.4847 3.8874 2.5530 44 1 7.0303 3.8658 4.1849 45 1 8.5518 3.0612 4.6392 46 1 7.9168 4.8886 6.5153 47 1 7.8207 6.3921 9.4937 48 1 4.1119 -2.1440 0.0110 49 1 1.2545 -2.8163 -1.0270 50 1 0.4853 -2.3679 0.5143 51 1 2.0234 -3.2638 0.5148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268421936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:53 Heat of formation + Delta-G solvation = -67.569695 kcal Electronic energy + Delta-G solvation = -29115.409578 eV Core-core repulsion = 25013.632756 eV Total energy + Delta-G solvation = -4101.776822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64561 -39.21217 -38.30341 -36.90424 -35.01255 -34.01254 -33.79035 -32.50334 -31.63544 -31.19661 -29.28167 -28.16521 -26.97337 -26.21751 -24.18214 -23.26583 -22.29224 -22.13909 -21.09546 -20.23757 -19.23303 -17.95884 -17.78736 -16.85248 -16.19095 -15.79545 -15.66787 -15.46596 -15.22788 -14.97670 -14.60016 -14.50110 -14.35484 -13.98867 -13.83496 -13.72807 -13.66896 -13.40902 -13.24044 -13.09901 -12.88562 -12.75017 -12.47036 -12.27109 -12.23206 -12.05803 -11.74799 -11.65313 -11.50273 -11.36080 -11.24441 -11.23926 -11.02468 -10.90819 -10.44364 -10.21356 -10.11556 -9.50092 -9.36059 -9.17668 -8.93551 -8.46854 -8.06816 -7.95969 -6.41515 -3.82544 0.51479 1.00094 2.58651 2.90905 3.20097 3.25721 3.30127 3.51989 3.90818 4.03817 4.24309 4.33170 4.34578 4.46527 4.60666 4.79948 4.81145 4.84356 4.86834 4.95268 5.07525 5.13079 5.15746 5.22403 5.24375 5.30677 5.31776 5.34759 5.37236 5.46044 5.52165 5.58266 5.66572 5.69131 5.73847 5.80550 5.91418 5.94352 5.95352 5.99877 6.02095 6.08500 6.19929 6.26922 6.31116 6.54902 7.20280 7.27500 7.55001 7.65490 7.99210 8.06137 8.61324 9.17694 9.54335 10.05804 10.76128 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.001830 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.771278 B =15294.020831 C =17104.083339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.138 4.138 6 C 0.560 3.440 7 O -0.540 6.540 8 N -0.719 5.719 9 C 0.143 3.857 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.126 4.126 13 C 0.058 3.942 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.057 4.057 28 C -0.098 4.098 29 C -0.116 4.116 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.135 0.865 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -16.440 -19.049 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.141 4.141 6 C 0.348 3.652 7 O -0.418 6.418 8 N -0.371 5.371 9 C 0.039 3.961 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.164 4.164 13 C -0.071 4.071 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.759 3.241 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.076 4.076 28 C -0.098 4.098 29 C -0.173 4.173 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.237 0.763 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.153 0.847 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.432 -16.275 -19.516 28.743 hybrid contribution 0.368 0.290 1.280 1.363 sum -13.064 -15.984 -18.237 27.545 Atomic orbital electron populations 1.20908 0.90918 1.03152 1.02762 1.20016 0.96316 0.92603 0.97326 1.20994 0.93881 0.97841 1.01470 1.21301 0.94580 0.97004 0.97584 1.19917 0.92803 0.94441 1.06905 1.18275 0.87086 0.83875 0.75969 1.90761 1.69885 1.31204 1.49952 1.46055 1.07441 1.08505 1.75079 1.21002 0.78985 0.99121 0.97030 0.89266 1.22160 1.01502 1.02317 0.96049 1.21883 1.02166 0.96528 0.95808 1.21965 1.00575 0.90624 0.93955 1.60097 1.20959 1.34088 1.15002 1.21667 1.01296 0.96681 0.88581 1.19809 0.85798 0.88661 0.83120 1.90516 1.45179 1.52041 1.59066 1.41863 1.49670 1.19934 1.08553 1.19657 1.32531 0.96538 0.94243 0.87962 1.25272 0.97154 0.99447 0.96114 1.69608 1.40428 1.36707 1.07582 0.85906 0.79240 0.81456 0.77544 1.19876 1.20982 1.19918 1.21133 0.93103 0.97791 0.95526 1.19755 0.93361 0.95258 1.01389 1.20837 1.00068 0.93841 1.02516 0.90648 0.91205 0.91040 0.85262 0.85494 0.76316 0.92149 0.92294 0.91398 0.90072 0.90179 0.91227 0.95482 0.83194 0.89715 0.93911 0.77454 0.91814 0.84727 0.91002 0.91105 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.18 36.01 0.33 -0.27 16 2 C -0.06 -0.47 5.89 -104.53 -0.62 -1.08 16 3 C -0.12 -0.94 9.68 -39.64 -0.38 -1.32 16 4 C -0.09 -0.71 9.54 -39.19 -0.37 -1.09 16 5 C -0.14 -1.40 5.87 -104.96 -0.62 -2.01 16 6 C 0.56 6.49 7.74 -12.33 -0.10 6.39 16 7 O -0.54 -7.99 16.01 5.32 0.09 -7.90 16 8 N -0.72 -6.75 4.48 -54.75 -0.25 -7.00 16 9 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16 10 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 11 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 12 C -0.13 -1.22 5.01 -26.73 -0.13 -1.35 16 13 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 14 N -0.67 -10.67 6.13 -115.06 -0.70 -11.37 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 17 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 18 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.06 -0.56 9.24 -39.18 -0.36 -0.92 16 28 C -0.10 -0.79 5.87 -104.68 -0.61 -1.41 16 29 C -0.12 -0.66 9.18 36.01 0.33 -0.33 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.07 0.29 6.68 -51.93 -0.35 -0.05 16 33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.13 0.80 6.41 -52.49 -0.34 0.47 16 35 H 0.40 3.04 6.64 -40.82 -0.27 2.77 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.13 1.34 7.65 -52.49 -0.40 0.94 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.32 6.68 -51.93 -0.35 -0.02 16 51 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 LS Contribution 422.44 15.07 6.37 6.37 Total: -1.00 -33.87 422.44 -9.66 -43.53 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -8.15 Total: 13.90 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.74 Total: 0.64 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.28 Total: -56.80 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.87 -9.66 -43.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268421936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.041 kcal (2) G-P(sol) polarization free energy of solvation -33.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds