Wall clock time and date at job start Wed Apr 1 2020 04:18:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38379 * 119.84942 * 2 1
4 4 C 1.37935 * 120.14550 * 179.97438 * 3 2 1
5 5 C 1.39597 * 119.85095 * 0.02562 * 4 3 2
6 6 C 1.47852 * 120.14434 * 180.02562 * 5 4 3
7 7 O 1.21550 * 119.99884 * 180.02562 * 6 5 4
8 8 N 1.34771 * 120.00021 * 359.97438 * 6 5 4
9 9 C 1.46495 * 120.00213 * 180.02562 * 8 6 5
10 10 H 1.08998 * 109.47252 * 325.00508 * 9 8 6
11 11 C 1.53000 * 109.46997 * 85.00023 * 9 8 6
12 12 C 1.53002 * 109.47530 * 205.00424 * 9 8 6
13 13 C 1.53002 * 109.47102 * 64.99753 * 12 9 8
14 14 N 1.46896 * 109.47087 * 180.02562 * 13 12 9
15 15 C 1.46896 * 111.00127 * 180.02562 * 14 13 12
16 16 C 1.50703 * 109.47446 * 180.02562 * 15 14 13
17 17 O 1.21289 * 119.99395 * 359.97438 * 16 15 14
18 18 N 1.34776 * 120.00001 * 180.02562 * 16 15 14
19 19 C 1.37101 * 119.99635 * 180.02562 * 18 16 15
20 20 H 1.07994 * 120.00238 * 359.97438 * 19 18 16
21 21 C 1.38946 * 119.99946 * 179.97438 * 19 18 16
22 22 N 1.31415 * 119.99903 * 359.97438 * 21 19 18
23 23 Si 1.86796 * 120.00223 * 179.97438 * 21 19 18
24 24 H 1.48497 * 109.47183 * 59.99859 * 23 21 19
25 25 H 1.48499 * 109.47072 * 180.02562 * 23 21 19
26 26 H 1.48502 * 109.46987 * 299.99888 * 23 21 19
27 27 C 1.39557 * 119.71216 * 359.71134 * 5 4 3
28 28 C 1.37979 * 119.85073 * 0.54115 * 27 5 4
29 29 C 1.50703 * 119.92827 * 179.75190 * 28 27 5
30 30 H 1.08999 * 109.47116 * 270.02321 * 1 2 3
31 31 H 1.08998 * 109.47015 * 30.02698 * 1 2 3
32 32 H 1.09002 * 109.46446 * 150.02262 * 1 2 3
33 33 H 1.08005 * 119.92858 * 359.97438 * 3 2 1
34 34 H 1.07996 * 120.07935 * 180.02562 * 4 3 2
35 35 H 0.97002 * 119.99849 * 0.02562 * 8 6 5
36 36 H 1.08995 * 109.47226 * 300.00077 * 11 9 8
37 37 H 1.09007 * 109.46660 * 60.00397 * 11 9 8
38 38 H 1.09000 * 109.47268 * 180.02562 * 11 9 8
39 39 H 1.08995 * 109.47055 * 185.00003 * 12 9 8
40 40 H 1.09004 * 109.46809 * 304.99915 * 12 9 8
41 41 H 1.08997 * 109.46979 * 300.00724 * 13 12 9
42 42 H 1.09001 * 109.46721 * 60.00113 * 13 12 9
43 43 H 1.00906 * 110.99998 * 303.95583 * 14 13 12
44 44 H 1.09005 * 109.46880 * 299.99884 * 15 14 13
45 45 H 1.09005 * 109.47136 * 59.99800 * 15 14 13
46 46 H 0.96997 * 119.99703 * 359.97438 * 18 16 15
47 47 H 0.97004 * 120.00300 * 180.02562 * 22 21 19
48 48 H 1.07998 * 120.07665 * 180.29572 * 27 5 4
49 49 H 1.09002 * 109.47152 * 269.72665 * 29 28 27
50 50 H 1.09001 * 109.46980 * 149.72766 * 29 28 27
51 51 H 1.09004 * 109.47113 * 29.72747 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1958 1.2002 0.0000
4 6 3.5751 1.2073 0.0005
5 6 4.2762 0.0002 0.0005
6 6 5.7547 0.0003 0.0017
7 8 6.3625 -1.0524 0.0012
8 7 6.4285 1.1674 0.0022
9 6 7.8935 1.1676 0.0028
10 1 8.2567 0.3256 0.5921
11 6 8.4040 1.0422 -1.4341
12 6 8.4033 2.4747 0.6130
13 6 7.9979 2.5418 2.0868
14 7 8.4868 3.7971 2.6725
15 6 8.1158 3.8961 4.0904
16 6 8.6327 5.1940 4.6555
17 8 9.2498 5.9608 3.9468
18 7 8.4100 5.5021 5.9485
19 6 8.8798 6.6832 6.4625
20 1 9.4286 7.3664 5.8313
21 6 8.6498 7.0011 7.7954
22 7 7.9816 6.1700 8.5633
23 14 9.2905 8.6099 8.4958
24 1 8.6960 9.7469 7.7481
25 1 8.9159 8.7096 9.9293
26 1 10.7693 8.6518 8.3670
27 6 3.5755 -1.2067 0.0061
28 6 2.1957 -1.1998 0.0003
29 6 1.4373 -2.5020 0.0006
30 1 -0.3633 0.0004 1.0277
31 1 -0.3633 0.8897 -0.5142
32 1 -0.3632 -0.8902 -0.5135
33 1 1.6522 2.1335 -0.0004
34 1 4.1116 2.1446 0.0010
35 1 5.9435 2.0075 0.0022
36 1 8.0409 0.1110 -1.8687
37 1 8.0408 1.8842 -2.0234
38 1 9.4940 1.0418 -1.4337
39 1 9.4896 2.5138 0.5327
40 1 7.9688 3.3192 0.0779
41 1 6.9116 2.5026 2.1670
42 1 8.4324 1.6973 2.6218
43 1 9.4847 3.8874 2.5530
44 1 7.0303 3.8658 4.1849
45 1 8.5518 3.0612 4.6392
46 1 7.9168 4.8886 6.5153
47 1 7.8207 6.3921 9.4937
48 1 4.1119 -2.1440 0.0110
49 1 1.2545 -2.8163 -1.0270
50 1 0.4853 -2.3679 0.5143
51 1 2.0234 -3.2638 0.5148
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001268421936.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:53
Heat of formation + Delta-G solvation = -67.569695 kcal
Electronic energy + Delta-G solvation = -29115.409578 eV
Core-core repulsion = 25013.632756 eV
Total energy + Delta-G solvation = -4101.776822 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-40.64561 -39.21217 -38.30341 -36.90424 -35.01255 -34.01254 -33.79035 -32.50334
-31.63544 -31.19661 -29.28167 -28.16521 -26.97337 -26.21751 -24.18214 -23.26583
-22.29224 -22.13909 -21.09546 -20.23757 -19.23303 -17.95884 -17.78736 -16.85248
-16.19095 -15.79545 -15.66787 -15.46596 -15.22788 -14.97670 -14.60016 -14.50110
-14.35484 -13.98867 -13.83496 -13.72807 -13.66896 -13.40902 -13.24044 -13.09901
-12.88562 -12.75017 -12.47036 -12.27109 -12.23206 -12.05803 -11.74799 -11.65313
-11.50273 -11.36080 -11.24441 -11.23926 -11.02468 -10.90819 -10.44364 -10.21356
-10.11556 -9.50092 -9.36059 -9.17668 -8.93551 -8.46854 -8.06816 -7.95969
-6.41515 -3.82544 0.51479 1.00094 2.58651 2.90905 3.20097 3.25721
3.30127 3.51989 3.90818 4.03817 4.24309 4.33170 4.34578 4.46527
4.60666 4.79948 4.81145 4.84356 4.86834 4.95268 5.07525 5.13079
5.15746 5.22403 5.24375 5.30677 5.31776 5.34759 5.37236 5.46044
5.52165 5.58266 5.66572 5.69131 5.73847 5.80550 5.91418 5.94352
5.95352 5.99877 6.02095 6.08500 6.19929 6.26922 6.31116 6.54902
7.20280 7.27500 7.55001 7.65490 7.99210 8.06137 8.61324 9.17694
9.54335 10.05804 10.76128
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011096 B = 0.001830 C = 0.001637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2522.771278 B =15294.020831 C =17104.083339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.062 4.062
3 C -0.124 4.124
4 C -0.086 4.086
5 C -0.138 4.138
6 C 0.560 3.440
7 O -0.540 6.540
8 N -0.719 5.719
9 C 0.143 3.857
10 H 0.089 0.911
11 C -0.162 4.162
12 C -0.126 4.126
13 C 0.058 3.942
14 N -0.669 5.669
15 C 0.050 3.950
16 C 0.441 3.559
17 O -0.584 6.584
18 N -0.564 5.564
19 C -0.300 4.300
20 H 0.103 0.897
21 C 0.022 3.978
22 N -0.902 5.902
23 Si 0.932 3.068
24 H -0.273 1.273
25 H -0.284 1.284
26 H -0.274 1.274
27 C -0.057 4.057
28 C -0.098 4.098
29 C -0.116 4.116
30 H 0.075 0.925
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.129 0.871
34 H 0.127 0.873
35 H 0.401 0.599
36 H 0.059 0.941
37 H 0.058 0.942
38 H 0.067 0.933
39 H 0.081 0.919
40 H 0.080 0.920
41 H 0.069 0.931
42 H 0.027 0.973
43 H 0.349 0.651
44 H 0.085 0.915
45 H 0.043 0.957
46 H 0.392 0.608
47 H 0.272 0.728
48 H 0.135 0.865
49 H 0.071 0.929
50 H 0.070 0.930
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.728 -16.440 -19.049 28.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.063 4.063
3 C -0.142 4.142
4 C -0.105 4.105
5 C -0.141 4.141
6 C 0.348 3.652
7 O -0.418 6.418
8 N -0.371 5.371
9 C 0.039 3.961
10 H 0.107 0.893
11 C -0.220 4.220
12 C -0.164 4.164
13 C -0.071 4.071
14 N -0.301 5.301
15 C -0.082 4.082
16 C 0.226 3.774
17 O -0.468 6.468
18 N -0.200 5.200
19 C -0.430 4.430
20 H 0.120 0.880
21 C -0.180 4.180
22 N -0.543 5.543
23 Si 0.759 3.241
24 H -0.199 1.199
25 H -0.210 1.210
26 H -0.199 1.199
27 C -0.076 4.076
28 C -0.098 4.098
29 C -0.173 4.173
30 H 0.094 0.906
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.147 0.853
34 H 0.145 0.855
35 H 0.237 0.763
36 H 0.079 0.921
37 H 0.077 0.923
38 H 0.086 0.914
39 H 0.099 0.901
40 H 0.098 0.902
41 H 0.088 0.912
42 H 0.045 0.955
43 H 0.168 0.832
44 H 0.103 0.897
45 H 0.061 0.939
46 H 0.225 0.775
47 H 0.082 0.918
48 H 0.153 0.847
49 H 0.090 0.910
50 H 0.089 0.911
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -13.432 -16.275 -19.516 28.743
hybrid contribution 0.368 0.290 1.280 1.363
sum -13.064 -15.984 -18.237 27.545
Atomic orbital electron populations
1.20908 0.90918 1.03152 1.02762 1.20016 0.96316 0.92603 0.97326
1.20994 0.93881 0.97841 1.01470 1.21301 0.94580 0.97004 0.97584
1.19917 0.92803 0.94441 1.06905 1.18275 0.87086 0.83875 0.75969
1.90761 1.69885 1.31204 1.49952 1.46055 1.07441 1.08505 1.75079
1.21002 0.78985 0.99121 0.97030 0.89266 1.22160 1.01502 1.02317
0.96049 1.21883 1.02166 0.96528 0.95808 1.21965 1.00575 0.90624
0.93955 1.60097 1.20959 1.34088 1.15002 1.21667 1.01296 0.96681
0.88581 1.19809 0.85798 0.88661 0.83120 1.90516 1.45179 1.52041
1.59066 1.41863 1.49670 1.19934 1.08553 1.19657 1.32531 0.96538
0.94243 0.87962 1.25272 0.97154 0.99447 0.96114 1.69608 1.40428
1.36707 1.07582 0.85906 0.79240 0.81456 0.77544 1.19876 1.20982
1.19918 1.21133 0.93103 0.97791 0.95526 1.19755 0.93361 0.95258
1.01389 1.20837 1.00068 0.93841 1.02516 0.90648 0.91205 0.91040
0.85262 0.85494 0.76316 0.92149 0.92294 0.91398 0.90072 0.90179
0.91227 0.95482 0.83194 0.89715 0.93911 0.77454 0.91814 0.84727
0.91002 0.91105 0.91242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.60 9.18 36.01 0.33 -0.27 16
2 C -0.06 -0.47 5.89 -104.53 -0.62 -1.08 16
3 C -0.12 -0.94 9.68 -39.64 -0.38 -1.32 16
4 C -0.09 -0.71 9.54 -39.19 -0.37 -1.09 16
5 C -0.14 -1.40 5.87 -104.96 -0.62 -2.01 16
6 C 0.56 6.49 7.74 -12.33 -0.10 6.39 16
7 O -0.54 -7.99 16.01 5.32 0.09 -7.90 16
8 N -0.72 -6.75 4.48 -54.75 -0.25 -7.00 16
9 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16
10 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16
11 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16
12 C -0.13 -1.22 5.01 -26.73 -0.13 -1.35 16
13 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16
14 N -0.67 -10.67 6.13 -115.06 -0.70 -11.37 16
15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16
16 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16
17 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16
18 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16
19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16
20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16
21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
22 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16
23 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16
24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
27 C -0.06 -0.56 9.24 -39.18 -0.36 -0.92 16
28 C -0.10 -0.79 5.87 -104.68 -0.61 -1.41 16
29 C -0.12 -0.66 9.18 36.01 0.33 -0.33 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16
32 H 0.07 0.29 6.68 -51.93 -0.35 -0.05 16
33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16
34 H 0.13 0.80 6.41 -52.49 -0.34 0.47 16
35 H 0.40 3.04 6.64 -40.82 -0.27 2.77 16
36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16
38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
41 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16
42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16
43 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16
44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
45 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16
47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
48 H 0.13 1.34 7.65 -52.49 -0.40 0.94 16
49 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
50 H 0.07 0.32 6.68 -51.93 -0.35 -0.02 16
51 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16
LS Contribution 422.44 15.07 6.37 6.37
Total: -1.00 -33.87 422.44 -9.66 -43.53
By element:
Atomic # 1 Polarization: 22.05 SS G_CDS: -8.15 Total: 13.90 kcal
Atomic # 6 Polarization: 3.37 SS G_CDS: -2.74 Total: 0.64 kcal
Atomic # 7 Polarization: -56.52 SS G_CDS: -0.28 Total: -56.80 kcal
Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 6.37 Total: 6.37 kcal
Total: -33.87 -9.66 -43.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268421936.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.041 kcal
(2) G-P(sol) polarization free energy of solvation -33.872 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds