Wall clock time and date at job start Wed Apr 1 2020 04:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.84942 * 2 1 4 4 C 1.37935 * 120.14550 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.85095 * 0.02562 * 4 3 2 6 6 C 1.47852 * 120.14434 * 180.02562 * 5 4 3 7 7 O 1.21550 * 119.99884 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00021 * 359.97438 * 6 5 4 9 9 C 1.46495 * 120.00213 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47252 * 325.00508 * 9 8 6 11 11 C 1.53000 * 109.46997 * 85.00023 * 9 8 6 12 12 C 1.53002 * 109.47530 * 205.00424 * 9 8 6 13 13 C 1.53002 * 109.47102 * 64.99753 * 12 9 8 14 14 N 1.46896 * 109.47087 * 180.02562 * 13 12 9 15 15 C 1.46896 * 111.00127 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47446 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99395 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00001 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00238 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99946 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99903 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47183 * 59.99859 * 23 21 19 25 25 H 1.48499 * 109.47072 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46987 * 299.99888 * 23 21 19 27 27 C 1.39557 * 119.71216 * 359.71134 * 5 4 3 28 28 C 1.37979 * 119.85073 * 0.54115 * 27 5 4 29 29 C 1.50703 * 119.92827 * 179.75190 * 28 27 5 30 30 H 1.08999 * 109.47116 * 270.02321 * 1 2 3 31 31 H 1.08998 * 109.47015 * 30.02698 * 1 2 3 32 32 H 1.09002 * 109.46446 * 150.02262 * 1 2 3 33 33 H 1.08005 * 119.92858 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.07935 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99849 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47226 * 300.00077 * 11 9 8 37 37 H 1.09007 * 109.46660 * 60.00397 * 11 9 8 38 38 H 1.09000 * 109.47268 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.47055 * 185.00003 * 12 9 8 40 40 H 1.09004 * 109.46809 * 304.99915 * 12 9 8 41 41 H 1.08997 * 109.46979 * 300.00724 * 13 12 9 42 42 H 1.09001 * 109.46721 * 60.00113 * 13 12 9 43 43 H 1.00906 * 110.99998 * 303.95583 * 14 13 12 44 44 H 1.09005 * 109.46880 * 299.99884 * 15 14 13 45 45 H 1.09005 * 109.47136 * 59.99800 * 15 14 13 46 46 H 0.96997 * 119.99703 * 359.97438 * 18 16 15 47 47 H 0.97004 * 120.00300 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.07665 * 180.29572 * 27 5 4 49 49 H 1.09002 * 109.47152 * 269.72665 * 29 28 27 50 50 H 1.09001 * 109.46980 * 149.72766 * 29 28 27 51 51 H 1.09004 * 109.47113 * 29.72747 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 0.0005 5 6 4.2762 0.0002 0.0005 6 6 5.7547 0.0003 0.0017 7 8 6.3625 -1.0524 0.0012 8 7 6.4285 1.1674 0.0022 9 6 7.8935 1.1676 0.0028 10 1 8.2567 0.3256 0.5921 11 6 8.4040 1.0422 -1.4341 12 6 8.4033 2.4747 0.6130 13 6 7.9979 2.5418 2.0868 14 7 8.4868 3.7971 2.6725 15 6 8.1158 3.8961 4.0904 16 6 8.6327 5.1940 4.6555 17 8 9.2498 5.9608 3.9468 18 7 8.4100 5.5021 5.9485 19 6 8.8798 6.6832 6.4625 20 1 9.4286 7.3664 5.8313 21 6 8.6498 7.0011 7.7954 22 7 7.9816 6.1700 8.5633 23 14 9.2905 8.6099 8.4958 24 1 8.6960 9.7469 7.7481 25 1 8.9159 8.7096 9.9293 26 1 10.7693 8.6518 8.3670 27 6 3.5755 -1.2067 0.0061 28 6 2.1957 -1.1998 0.0003 29 6 1.4373 -2.5020 0.0006 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6522 2.1335 -0.0004 34 1 4.1116 2.1446 0.0010 35 1 5.9435 2.0075 0.0022 36 1 8.0409 0.1110 -1.8687 37 1 8.0408 1.8842 -2.0234 38 1 9.4940 1.0418 -1.4337 39 1 9.4896 2.5138 0.5327 40 1 7.9688 3.3192 0.0779 41 1 6.9116 2.5026 2.1670 42 1 8.4324 1.6973 2.6218 43 1 9.4847 3.8874 2.5530 44 1 7.0303 3.8658 4.1849 45 1 8.5518 3.0612 4.6392 46 1 7.9168 4.8886 6.5153 47 1 7.8207 6.3921 9.4937 48 1 4.1119 -2.1440 0.0110 49 1 1.2545 -2.8163 -1.0270 50 1 0.4853 -2.3679 0.5143 51 1 2.0234 -3.2638 0.5148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268421936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:50 Heat of formation + Delta-G solvation = -90.525701 kcal Electronic energy + Delta-G solvation = -29116.405025 eV Core-core repulsion = 25013.632756 eV Total energy + Delta-G solvation = -4102.772269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.41297 -40.19037 -39.87966 -37.94644 -36.31870 -35.71935 -34.61894 -33.28711 -33.07206 -32.45534 -30.35202 -28.69061 -27.80841 -27.51527 -25.81149 -24.08002 -23.14450 -22.89945 -21.92372 -21.09822 -20.95552 -19.91511 -18.60823 -17.85863 -17.64450 -17.04758 -16.51937 -16.36164 -16.28920 -16.05887 -15.96163 -15.65129 -15.38776 -15.15202 -15.00247 -14.81764 -14.63333 -14.36274 -14.01157 -13.85853 -13.62712 -13.60837 -13.49173 -13.36427 -13.22400 -12.93734 -12.88909 -12.81025 -12.65154 -12.44190 -12.31372 -12.22331 -12.14331 -12.11793 -11.91502 -11.77137 -11.50514 -11.01064 -10.36857 -10.20392 -10.02716 -9.81295 -9.54069 -9.36901 -8.46993 -5.96190 -0.16616 0.37659 1.39947 1.41840 1.53010 1.81029 2.03893 2.12532 2.28796 2.82840 2.86718 3.19938 3.46791 3.65714 3.78494 3.91057 3.93346 4.01784 4.03359 4.08530 4.27541 4.31031 4.31791 4.41183 4.47192 4.51590 4.58984 4.60043 4.66658 4.75475 4.80531 4.81052 4.85019 4.86558 4.89059 4.97455 5.04638 5.18326 5.21299 5.27770 5.29512 5.31761 5.40242 5.41470 5.51427 5.62324 5.86632 5.96421 6.07768 6.38321 6.49759 6.58894 7.11438 7.16282 7.54919 8.09798 8.70135 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.001830 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.771278 B =15294.020831 C =17104.083339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.087 4.087 5 C -0.158 4.158 6 C 0.558 3.442 7 O -0.582 6.582 8 N -0.708 5.708 9 C 0.147 3.853 10 H 0.072 0.928 11 C -0.156 4.156 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.678 5.678 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.076 4.076 28 C -0.105 4.105 29 C -0.116 4.116 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.345 0.655 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.121 0.879 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 -15.856 -19.290 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.161 4.161 6 C 0.347 3.653 7 O -0.463 6.463 8 N -0.360 5.360 9 C 0.043 3.957 10 H 0.090 0.910 11 C -0.215 4.215 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.310 5.310 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.095 4.095 28 C -0.105 4.105 29 C -0.172 4.172 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.249 0.751 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.164 0.836 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.139 0.861 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.924 -15.691 -19.761 29.316 hybrid contribution 0.779 0.077 1.312 1.527 sum -14.145 -15.615 -18.449 28.005 Atomic orbital electron populations 1.20976 0.88916 1.04274 1.03500 1.20397 0.97847 0.92266 0.95978 1.21337 0.93721 0.98904 1.00749 1.21512 0.95161 0.96898 0.97015 1.19919 0.91990 0.95444 1.08769 1.18571 0.87811 0.83699 0.75256 1.90731 1.70774 1.32649 1.52153 1.45991 1.07464 1.08458 1.74084 1.20935 0.79002 0.98358 0.97442 0.91001 1.22104 1.02246 1.01887 0.95220 1.21779 1.02709 0.96562 0.94117 1.22025 1.00753 0.88877 0.95106 1.60114 1.20833 1.36357 1.13723 1.21531 1.02073 0.93522 0.89754 1.20832 0.84330 0.90049 0.82241 1.90484 1.46620 1.53883 1.59814 1.41941 1.50110 1.19580 1.09410 1.19650 1.34138 0.97710 0.94960 0.90174 1.26076 0.96881 1.02604 0.95846 1.69673 1.40535 1.37983 1.07965 0.84966 0.78605 0.77360 0.77277 1.19603 1.19531 1.19669 1.21196 0.94107 0.97386 0.96790 1.20032 0.92809 0.96749 1.00912 1.20888 1.00346 0.92646 1.03312 0.89926 0.90068 0.90034 0.83058 0.83734 0.75087 0.93787 0.91148 0.90220 0.89280 0.89545 0.90709 0.95362 0.83613 0.87951 0.92060 0.77027 0.91279 0.86051 0.90054 0.89624 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.18 71.24 0.65 -0.24 16 2 C -0.06 -0.86 5.89 -19.81 -0.12 -0.98 16 3 C -0.13 -1.72 9.68 22.23 0.22 -1.50 16 4 C -0.09 -1.34 9.54 22.53 0.21 -1.13 16 5 C -0.16 -3.24 5.87 -20.09 -0.12 -3.36 16 6 C 0.56 13.21 7.74 86.79 0.67 13.88 16 7 O -0.58 -18.10 16.01 -3.87 -0.06 -18.16 16 8 N -0.71 -12.87 4.48 -445.42 -2.00 -14.86 16 9 C 0.15 2.70 2.57 44.99 0.12 2.82 16 10 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 11 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 12 C -0.11 -2.01 5.01 30.60 0.15 -1.86 16 13 C 0.06 1.38 5.57 86.30 0.48 1.86 16 14 N -0.68 -20.68 6.13 -517.93 -3.17 -23.85 16 15 C 0.06 2.20 6.17 85.56 0.53 2.72 16 16 C 0.44 20.88 7.82 87.66 0.69 21.57 16 17 O -0.62 -34.30 15.78 -3.06 -0.05 -34.35 16 18 N -0.57 -29.59 5.29 -306.99 -1.62 -31.22 16 19 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 22 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 23 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C -0.08 -1.54 9.24 22.53 0.21 -1.34 16 28 C -0.10 -1.65 5.87 -19.90 -0.12 -1.76 16 29 C -0.12 -1.20 9.18 71.24 0.65 -0.55 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.08 0.45 6.68 -2.39 -0.02 0.44 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.15 1.56 6.41 -2.91 -0.02 1.54 16 35 H 0.41 5.65 6.64 -92.71 -0.62 5.03 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.07 1.62 7.75 -2.39 -0.02 1.60 16 42 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.35 10.99 8.43 -89.69 -0.76 10.24 16 44 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 45 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.12 2.67 7.65 -2.91 -0.02 2.65 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.08 0.62 6.68 -2.39 -0.02 0.61 16 51 H 0.07 0.72 8.08 -2.38 -0.02 0.70 16 Total: -1.00 -74.12 422.44 0.46 -73.66 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -1.14 Total: 43.77 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.19 Total: 9.69 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -6.51 Total: -119.52 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.11 Total: -52.51 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.12 0.46 -73.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268421936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.863 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds