Wall clock time and date at job start Wed Apr 1 2020 04:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38380 * 119.85442 * 2 1 4 4 C 1.37941 * 120.14513 * 179.76640 * 3 2 1 5 5 C 1.39597 * 119.84867 * 0.50673 * 4 3 2 6 6 C 1.47849 * 120.13978 * 179.72110 * 5 4 3 7 7 O 1.21551 * 119.99922 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00044 * 0.02831 * 6 5 4 9 9 C 1.46498 * 120.00098 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46904 * 34.99438 * 9 8 6 11 11 C 1.53010 * 109.46995 * 274.99948 * 9 8 6 12 12 C 1.52997 * 109.47376 * 154.99759 * 9 8 6 13 13 C 1.52997 * 109.47055 * 294.99851 * 12 9 8 14 14 N 1.46908 * 109.46886 * 179.97438 * 13 12 9 15 15 C 1.46894 * 110.99583 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47015 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99622 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00179 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99568 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00561 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99421 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00537 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46820 * 59.99982 * 23 21 19 25 25 H 1.48489 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47015 * 300.00293 * 23 21 19 27 27 C 1.39553 * 119.71475 * 359.75156 * 5 4 3 28 28 C 1.37976 * 119.85150 * 359.97438 * 27 5 4 29 29 C 1.50706 * 119.92740 * 179.97438 * 28 27 5 30 30 H 1.09002 * 109.47152 * 269.72297 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72397 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72378 * 1 2 3 33 33 H 1.07995 * 119.92684 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.06887 * 180.23430 * 4 3 2 35 35 H 0.96994 * 119.99930 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47094 * 59.99860 * 11 9 8 37 37 H 1.08997 * 109.47147 * 179.97438 * 11 9 8 38 38 H 1.08992 * 109.46863 * 299.99952 * 11 9 8 39 39 H 1.09004 * 109.46899 * 55.00582 * 12 9 8 40 40 H 1.09002 * 109.47144 * 174.99533 * 12 9 8 41 41 H 1.08992 * 109.47491 * 299.99929 * 13 12 9 42 42 H 1.09000 * 109.46863 * 60.00362 * 13 12 9 43 43 H 1.00905 * 111.00013 * 303.95395 * 14 13 12 44 44 H 1.09001 * 109.47050 * 299.99272 * 15 14 13 45 45 H 1.09000 * 109.47687 * 60.00022 * 15 14 13 46 46 H 0.96994 * 120.00176 * 359.97438 * 18 16 15 47 47 H 0.96991 * 120.00497 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.07365 * 179.97438 * 27 5 4 49 49 H 1.08999 * 109.47225 * 270.02579 * 29 28 27 50 50 H 1.08998 * 109.46645 * 30.02796 * 29 28 27 51 51 H 1.09002 * 109.46708 * 150.02294 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2072 0.0049 5 6 4.2762 0.0000 -0.0009 6 6 5.7547 0.0000 -0.0020 7 8 6.3625 -1.0527 -0.0075 8 7 6.4286 1.1672 0.0032 9 6 7.8936 1.1672 0.0027 10 1 8.2567 0.3281 -0.5906 11 6 8.4040 1.0348 1.4391 12 6 8.4034 2.4773 -0.6010 13 6 7.9982 2.5515 -2.0745 14 7 8.4872 3.8098 -2.6540 15 6 8.1153 3.9161 -4.0711 16 6 8.6333 5.2163 -4.6302 17 8 9.2511 5.9793 -3.9179 18 7 8.4101 5.5311 -5.9215 19 6 8.8819 6.7136 -6.4301 20 1 9.4320 7.3930 -5.7960 21 6 8.6522 7.0379 -7.7616 22 7 7.9824 6.2114 -8.5332 23 14 9.2944 8.6494 -8.4546 24 1 10.7732 8.6894 -8.3255 25 1 8.9190 8.7567 -9.8872 26 1 8.7009 9.7835 -7.7016 27 6 3.5754 -1.2068 -0.0063 28 6 2.1957 -1.1998 -0.0054 29 6 1.4371 -2.5020 -0.0118 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5096 33 1 1.6523 2.1334 -0.0004 34 1 4.1116 2.1445 0.0087 35 1 5.9436 2.0071 0.0073 36 1 8.0408 0.1015 1.8692 37 1 9.4940 1.0344 1.4387 38 1 8.0409 1.8739 2.0324 39 1 7.9690 3.3191 -0.0618 40 1 9.4897 2.5160 -0.5205 41 1 8.4326 1.7098 -2.6136 42 1 6.9118 2.5129 -2.1549 43 1 8.1495 4.6040 -2.1312 44 1 8.5507 3.0841 -4.6245 45 1 7.0297 3.8867 -4.1652 46 1 7.9164 4.9207 -6.4912 47 1 7.8225 6.4376 -9.4627 48 1 4.1118 -2.1442 -0.0112 49 1 1.2540 -2.8108 -1.0410 50 1 2.0234 -3.2664 0.4980 51 1 0.4854 -2.3706 0.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268421937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:00 Heat of formation + Delta-G solvation = -67.300273 kcal Electronic energy + Delta-G solvation = -29124.161834 eV Core-core repulsion = 25022.396695 eV Total energy + Delta-G solvation = -4101.765139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.66946 -39.23406 -38.30361 -36.91479 -35.01374 -34.03413 -33.79263 -32.52928 -31.65006 -31.19819 -29.28230 -28.18991 -26.99537 -26.21871 -24.18320 -23.29250 -22.32214 -22.12955 -21.12388 -20.25648 -19.23302 -17.96110 -17.81171 -16.84961 -16.18716 -15.84742 -15.69901 -15.47410 -15.20686 -14.95955 -14.65067 -14.53089 -14.37982 -14.03162 -13.84883 -13.75370 -13.65883 -13.39728 -13.25938 -13.07761 -12.91503 -12.73519 -12.49288 -12.24791 -12.21771 -12.07631 -11.77370 -11.68205 -11.51893 -11.38590 -11.30558 -11.14032 -11.02907 -10.93908 -10.44366 -10.21364 -10.13074 -9.50050 -9.38805 -9.20521 -8.96387 -8.46181 -8.06216 -7.95895 -6.41465 -3.82525 0.48798 0.97153 2.56443 2.88752 3.20106 3.25768 3.30161 3.49414 3.90761 4.03880 4.23912 4.30905 4.31644 4.43715 4.57853 4.76763 4.78851 4.81657 4.84027 4.98512 5.05201 5.12899 5.18246 5.21204 5.24072 5.27704 5.28481 5.32894 5.36644 5.43863 5.52186 5.53522 5.66530 5.69302 5.75907 5.78565 5.91081 5.91551 5.95706 5.99281 6.01033 6.07597 6.17364 6.27166 6.30561 6.52111 7.20360 7.24497 7.55035 7.65701 7.97082 8.06169 8.61353 9.17720 9.54364 10.05821 10.76181 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.001830 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.665706 B =15295.142879 C =17096.065919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.124 4.124 4 C -0.087 4.087 5 C -0.137 4.137 6 C 0.560 3.440 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.143 3.857 10 H 0.092 0.908 11 C -0.162 4.162 12 C -0.125 4.125 13 C 0.059 3.941 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.057 4.057 28 C -0.097 4.097 29 C -0.116 4.116 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.399 0.601 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.135 0.865 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -15.814 19.434 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.140 4.140 6 C 0.348 3.652 7 O -0.416 6.416 8 N -0.372 5.372 9 C 0.038 3.962 10 H 0.110 0.890 11 C -0.220 4.220 12 C -0.163 4.163 13 C -0.071 4.071 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.075 4.075 28 C -0.097 4.097 29 C -0.173 4.173 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.153 0.847 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.770 -16.267 19.551 28.922 hybrid contribution -1.168 1.117 -0.814 1.809 sum -14.937 -15.150 18.737 28.350 Atomic orbital electron populations 1.20908 0.90897 1.03305 1.02633 1.20015 0.96328 0.92592 0.97339 1.20988 0.93861 0.97843 1.01502 1.21278 0.94570 0.96940 0.97787 1.19922 0.92837 0.94432 1.06834 1.18270 0.87064 0.83896 0.76001 1.90766 1.69864 1.31159 1.49829 1.46067 1.07526 1.08395 1.75169 1.21026 0.78759 0.99287 0.97114 0.89027 1.22157 1.01644 1.02224 0.95978 1.21887 1.03169 0.95976 0.95290 1.21970 0.96989 0.93630 0.94470 1.60071 1.64048 1.03913 1.02071 1.21667 0.98035 0.98496 0.89996 1.19815 0.85821 0.88379 0.83388 1.90518 1.44948 1.52355 1.58986 1.41861 1.49563 1.19894 1.08697 1.19659 1.32453 0.96449 0.94407 0.87960 1.25273 0.97151 0.99472 0.96082 1.69604 1.40397 1.36820 1.07506 0.85909 0.79307 0.81416 0.77530 1.19864 1.20983 1.19930 1.21137 0.93106 0.97812 0.95485 1.19764 0.93365 0.95274 1.01283 1.20841 0.99987 0.93798 1.02660 0.90757 0.90967 0.91147 0.85301 0.85654 0.76578 0.92163 0.91251 0.92425 0.91331 0.88964 0.91024 0.95667 0.83320 0.89635 0.93987 0.77452 0.91811 0.84677 0.90876 0.91260 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.18 36.01 0.33 -0.26 16 2 C -0.06 -0.46 5.89 -104.53 -0.62 -1.07 16 3 C -0.12 -0.92 9.68 -39.64 -0.38 -1.30 16 4 C -0.09 -0.70 9.54 -39.18 -0.37 -1.08 16 5 C -0.14 -1.37 5.87 -104.97 -0.62 -1.99 16 6 C 0.56 6.42 7.74 -12.33 -0.10 6.33 16 7 O -0.54 -7.93 16.01 5.32 0.09 -7.84 16 8 N -0.72 -6.62 4.48 -54.75 -0.25 -6.87 16 9 C 0.14 1.36 2.57 -67.93 -0.17 1.18 16 10 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 11 C -0.16 -1.40 9.49 37.16 0.35 -1.05 16 12 C -0.12 -1.21 5.01 -26.73 -0.13 -1.34 16 13 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 14 N -0.67 -10.67 6.13 -115.06 -0.70 -11.38 16 15 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 16 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 17 O -0.58 -15.93 15.78 5.54 0.09 -15.84 16 18 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.06 -0.55 9.24 -39.19 -0.36 -0.91 16 28 C -0.10 -0.77 5.87 -104.68 -0.61 -1.39 16 29 C -0.12 -0.65 9.18 36.01 0.33 -0.32 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 6.68 -51.93 -0.35 -0.05 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.75 6.41 -52.49 -0.34 0.42 16 35 H 0.40 2.87 6.64 -40.82 -0.27 2.60 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.29 7.75 -51.93 -0.40 -0.12 16 43 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 51 H 0.07 0.30 6.69 -51.93 -0.35 -0.05 16 LS Contribution 422.44 15.07 6.37 6.37 Total: -1.00 -33.98 422.44 -9.66 -43.64 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -8.15 Total: 13.56 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.74 Total: 0.71 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.28 Total: -56.68 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.98 -9.66 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268421937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.664 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds