Wall clock time and date at job start Wed Apr 1 2020 04:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38380 * 119.85442 * 2 1 4 4 C 1.37941 * 120.14513 * 179.76640 * 3 2 1 5 5 C 1.39597 * 119.84867 * 0.50673 * 4 3 2 6 6 C 1.47849 * 120.13978 * 179.72110 * 5 4 3 7 7 O 1.21551 * 119.99922 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00044 * 0.02831 * 6 5 4 9 9 C 1.46498 * 120.00098 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46904 * 34.99438 * 9 8 6 11 11 C 1.53010 * 109.46995 * 274.99948 * 9 8 6 12 12 C 1.52997 * 109.47376 * 154.99759 * 9 8 6 13 13 C 1.52997 * 109.47055 * 294.99851 * 12 9 8 14 14 N 1.46908 * 109.46886 * 179.97438 * 13 12 9 15 15 C 1.46894 * 110.99583 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47015 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99622 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00179 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99568 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00561 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99421 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00537 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46820 * 59.99982 * 23 21 19 25 25 H 1.48489 * 109.47280 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47015 * 300.00293 * 23 21 19 27 27 C 1.39553 * 119.71475 * 359.75156 * 5 4 3 28 28 C 1.37976 * 119.85150 * 359.97438 * 27 5 4 29 29 C 1.50706 * 119.92740 * 179.97438 * 28 27 5 30 30 H 1.09002 * 109.47152 * 269.72297 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72397 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72378 * 1 2 3 33 33 H 1.07995 * 119.92684 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.06887 * 180.23430 * 4 3 2 35 35 H 0.96994 * 119.99930 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47094 * 59.99860 * 11 9 8 37 37 H 1.08997 * 109.47147 * 179.97438 * 11 9 8 38 38 H 1.08992 * 109.46863 * 299.99952 * 11 9 8 39 39 H 1.09004 * 109.46899 * 55.00582 * 12 9 8 40 40 H 1.09002 * 109.47144 * 174.99533 * 12 9 8 41 41 H 1.08992 * 109.47491 * 299.99929 * 13 12 9 42 42 H 1.09000 * 109.46863 * 60.00362 * 13 12 9 43 43 H 1.00905 * 111.00013 * 303.95395 * 14 13 12 44 44 H 1.09001 * 109.47050 * 299.99272 * 15 14 13 45 45 H 1.09000 * 109.47687 * 60.00022 * 15 14 13 46 46 H 0.96994 * 120.00176 * 359.97438 * 18 16 15 47 47 H 0.96991 * 120.00497 * 180.02562 * 22 21 19 48 48 H 1.08000 * 120.07365 * 179.97438 * 27 5 4 49 49 H 1.08999 * 109.47225 * 270.02579 * 29 28 27 50 50 H 1.08998 * 109.46645 * 30.02796 * 29 28 27 51 51 H 1.09002 * 109.46708 * 150.02294 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2072 0.0049 5 6 4.2762 0.0000 -0.0009 6 6 5.7547 0.0000 -0.0020 7 8 6.3625 -1.0527 -0.0075 8 7 6.4286 1.1672 0.0032 9 6 7.8936 1.1672 0.0027 10 1 8.2567 0.3281 -0.5906 11 6 8.4040 1.0348 1.4391 12 6 8.4034 2.4773 -0.6010 13 6 7.9982 2.5515 -2.0745 14 7 8.4872 3.8098 -2.6540 15 6 8.1153 3.9161 -4.0711 16 6 8.6333 5.2163 -4.6302 17 8 9.2511 5.9793 -3.9179 18 7 8.4101 5.5311 -5.9215 19 6 8.8819 6.7136 -6.4301 20 1 9.4320 7.3930 -5.7960 21 6 8.6522 7.0379 -7.7616 22 7 7.9824 6.2114 -8.5332 23 14 9.2944 8.6494 -8.4546 24 1 10.7732 8.6894 -8.3255 25 1 8.9190 8.7567 -9.8872 26 1 8.7009 9.7835 -7.7016 27 6 3.5754 -1.2068 -0.0063 28 6 2.1957 -1.1998 -0.0054 29 6 1.4371 -2.5020 -0.0118 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5096 33 1 1.6523 2.1334 -0.0004 34 1 4.1116 2.1445 0.0087 35 1 5.9436 2.0071 0.0073 36 1 8.0408 0.1015 1.8692 37 1 9.4940 1.0344 1.4387 38 1 8.0409 1.8739 2.0324 39 1 7.9690 3.3191 -0.0618 40 1 9.4897 2.5160 -0.5205 41 1 8.4326 1.7098 -2.6136 42 1 6.9118 2.5129 -2.1549 43 1 8.1495 4.6040 -2.1312 44 1 8.5507 3.0841 -4.6245 45 1 7.0297 3.8867 -4.1652 46 1 7.9164 4.9207 -6.4912 47 1 7.8225 6.4376 -9.4627 48 1 4.1118 -2.1442 -0.0112 49 1 1.2540 -2.8108 -1.0410 50 1 2.0234 -3.2664 0.4980 51 1 0.4854 -2.3706 0.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268421937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:57 Heat of formation + Delta-G solvation = -90.412836 kcal Electronic energy + Delta-G solvation = -29125.164070 eV Core-core repulsion = 25022.396695 eV Total energy + Delta-G solvation = -4102.767375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.42436 -40.19043 -39.88850 -37.95380 -36.31797 -35.71746 -34.63075 -33.28660 -33.08337 -32.46352 -30.35229 -28.70155 -27.80753 -27.52697 -25.81098 -24.09986 -23.13499 -22.90927 -21.95228 -21.07956 -20.97840 -19.91506 -18.61441 -17.85228 -17.65943 -17.02417 -16.52627 -16.39084 -16.30355 -16.05086 -15.95307 -15.67187 -15.33553 -15.16912 -15.03937 -14.94012 -14.63411 -14.27451 -14.03095 -13.80456 -13.63439 -13.60721 -13.48846 -13.38069 -13.24179 -12.93413 -12.90231 -12.81195 -12.65813 -12.44131 -12.31617 -12.27544 -12.14412 -12.06531 -11.93063 -11.79103 -11.50477 -11.01718 -10.38153 -10.20883 -10.02672 -9.82569 -9.55373 -9.33919 -8.46954 -5.96160 -0.17749 0.36365 1.39926 1.41870 1.53019 1.80143 2.03914 2.11195 2.28811 2.81679 2.87098 3.19999 3.47541 3.64569 3.76895 3.87819 3.90997 4.00905 4.01283 4.18441 4.26184 4.29569 4.30643 4.41557 4.44840 4.51391 4.57604 4.59666 4.66611 4.74593 4.79112 4.79776 4.84163 4.85257 4.93256 4.96686 5.06418 5.17203 5.20277 5.26787 5.29328 5.30718 5.40190 5.40288 5.51132 5.61253 5.87032 5.95183 6.08177 6.41911 6.48747 6.58967 7.11482 7.15576 7.55000 8.09870 8.70183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011119 B = 0.001830 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.665706 B =15295.142879 C =17096.065919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.087 4.087 5 C -0.158 4.158 6 C 0.557 3.443 7 O -0.581 6.581 8 N -0.708 5.708 9 C 0.147 3.853 10 H 0.072 0.928 11 C -0.156 4.156 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.076 4.076 28 C -0.105 4.105 29 C -0.116 4.116 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.410 0.590 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.347 0.653 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.121 0.879 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 -15.049 19.736 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.161 4.161 6 C 0.346 3.654 7 O -0.462 6.462 8 N -0.360 5.360 9 C 0.043 3.957 10 H 0.090 0.910 11 C -0.214 4.214 12 C -0.151 4.151 13 C -0.067 4.067 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.095 4.095 28 C -0.105 4.105 29 C -0.172 4.172 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.248 0.752 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.166 0.834 44 H 0.116 0.884 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.139 0.861 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.470 -15.502 19.856 29.562 hybrid contribution -0.689 0.844 -0.865 1.392 sum -16.159 -14.658 18.991 28.925 Atomic orbital electron populations 1.20977 0.88912 1.04178 1.03608 1.20400 0.97852 0.92272 0.95970 1.21337 0.93718 0.98896 1.00751 1.21504 0.95140 0.96862 0.97099 1.19920 0.91982 0.95463 1.08751 1.18578 0.87811 0.83724 0.75271 1.90736 1.70776 1.32661 1.52060 1.45977 1.07441 1.08403 1.74162 1.20934 0.78887 0.98465 0.97460 0.90991 1.22101 1.02235 1.01885 0.95216 1.21772 1.03117 0.96415 0.93796 1.22009 0.97625 0.91481 0.95548 1.60056 1.64880 1.05322 1.01100 1.21519 0.99146 0.95030 0.91119 1.20843 0.84377 0.89756 0.82498 1.90486 1.46407 1.54188 1.59742 1.41941 1.50001 1.19536 1.09558 1.19651 1.34058 0.97630 0.95122 0.90175 1.26077 0.96880 1.02645 0.95799 1.69668 1.40501 1.38103 1.07886 0.84968 0.78585 0.77362 0.77302 1.19755 1.19529 1.19517 1.21198 0.94115 0.97415 0.96775 1.20034 0.92805 0.96761 1.00880 1.20890 1.00416 0.92681 1.03230 0.89577 0.90205 0.90230 0.83026 0.83697 0.75178 0.93793 0.90324 0.91070 0.89716 0.89180 0.91608 0.94407 0.83398 0.88394 0.91629 0.77026 0.91275 0.86072 0.90347 0.91331 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.18 71.24 0.65 -0.20 16 2 C -0.06 -0.84 5.89 -19.81 -0.12 -0.95 16 3 C -0.13 -1.64 9.68 22.23 0.22 -1.42 16 4 C -0.09 -1.29 9.54 22.53 0.21 -1.07 16 5 C -0.16 -3.18 5.87 -20.09 -0.12 -3.29 16 6 C 0.56 13.03 7.74 86.79 0.67 13.70 16 7 O -0.58 -18.04 16.01 -3.87 -0.06 -18.10 16 8 N -0.71 -12.46 4.48 -445.40 -2.00 -14.46 16 9 C 0.15 2.70 2.57 44.99 0.12 2.81 16 10 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 11 C -0.16 -2.57 9.49 71.99 0.68 -1.89 16 12 C -0.11 -2.00 5.01 30.59 0.15 -1.84 16 13 C 0.06 1.40 5.57 86.30 0.48 1.88 16 14 N -0.68 -20.76 6.13 -517.93 -3.17 -23.94 16 15 C 0.06 2.22 6.17 85.56 0.53 2.74 16 16 C 0.44 20.88 7.82 87.66 0.69 21.56 16 17 O -0.62 -34.32 15.78 -3.08 -0.05 -34.37 16 18 N -0.57 -29.59 5.29 -306.97 -1.62 -31.22 16 19 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 23 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C -0.08 -1.53 9.24 22.52 0.21 -1.32 16 28 C -0.10 -1.61 5.87 -19.90 -0.12 -1.73 16 29 C -0.12 -1.18 9.18 71.24 0.65 -0.53 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.46 6.68 -2.39 -0.02 0.44 16 32 H 0.08 0.44 8.08 -2.38 -0.02 0.42 16 33 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.15 1.41 6.41 -2.91 -0.02 1.39 16 35 H 0.41 5.16 6.64 -92.71 -0.62 4.54 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 43 H 0.35 10.68 8.43 -89.69 -0.76 9.92 16 44 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 47 H 0.28 14.11 8.31 -92.72 -0.77 13.34 16 48 H 0.12 2.65 7.65 -2.91 -0.02 2.63 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 51 H 0.09 0.58 6.69 -2.39 -0.02 0.57 16 Total: -1.00 -74.64 422.44 0.46 -74.18 By element: Atomic # 1 Polarization: 43.85 SS G_CDS: -1.14 Total: 42.71 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.19 Total: 9.88 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.51 Total: -119.20 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.11 Total: -52.47 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.64 0.46 -74.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268421937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.237 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds