Wall clock time and date at job start Wed Apr 1 2020 04:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00107 * 2 1 4 4 C 1.38209 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.38220 * 119.99471 * 359.71037 * 5 4 3 7 7 C 1.38212 * 120.00398 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99470 * 0.02562 * 7 2 1 9 9 H 1.08994 * 109.47362 * 5.70604 * 8 7 2 10 10 C 1.52998 * 109.46849 * 125.70816 * 8 7 2 11 11 C 1.50699 * 109.47044 * 245.70176 * 8 7 2 12 12 O 1.21283 * 120.00100 * 0.02562 * 11 8 7 13 13 N 1.34777 * 119.99828 * 180.02562 * 11 8 7 14 14 C 1.46500 * 119.99838 * 180.02562 * 13 11 8 15 15 H 1.08998 * 109.47448 * 325.00370 * 14 13 11 16 16 C 1.53001 * 109.47457 * 85.00149 * 14 13 11 17 17 C 1.52998 * 109.47325 * 205.00083 * 14 13 11 18 18 N 1.46905 * 109.47059 * 54.99860 * 17 14 13 19 19 C 1.46894 * 110.99989 * 180.02562 * 18 17 14 20 20 C 1.50706 * 109.47095 * 180.02562 * 19 18 17 21 21 O 1.21294 * 119.99992 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00192 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99955 * 180.02562 * 22 20 19 24 24 H 1.07992 * 119.99939 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99696 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00278 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99897 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47184 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47404 * 119.99576 * 27 25 23 30 30 H 1.48498 * 109.47318 * 239.99790 * 27 25 23 31 31 H 1.09004 * 109.47546 * 264.01318 * 1 2 3 32 32 H 1.08993 * 109.47292 * 24.01912 * 1 2 3 33 33 H 1.08999 * 109.47039 * 144.01769 * 1 2 3 34 34 H 1.08010 * 119.99484 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00089 * 179.97438 * 4 3 2 36 36 H 1.07997 * 120.00291 * 179.97438 * 5 4 3 37 37 H 1.08004 * 119.99683 * 180.30023 * 6 5 4 38 38 H 1.09001 * 109.47407 * 179.97438 * 10 8 7 39 39 H 1.08999 * 109.47522 * 299.99717 * 10 8 7 40 40 H 1.09006 * 109.47404 * 60.00136 * 10 8 7 41 41 H 0.96995 * 120.00478 * 0.02562 * 13 11 8 42 42 H 1.08998 * 109.47263 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.47162 * 300.00430 * 16 14 13 44 44 H 1.08997 * 109.47106 * 59.99878 * 16 14 13 45 45 H 1.09001 * 109.47734 * 174.99820 * 17 14 13 46 46 H 1.09004 * 109.47244 * 295.00292 * 17 14 13 47 47 H 1.00898 * 111.00438 * 303.95840 * 18 17 14 48 48 H 1.08998 * 109.47421 * 299.99869 * 19 18 17 49 49 H 1.08994 * 109.47647 * 60.00368 * 19 18 17 50 50 H 0.96995 * 119.99767 * 359.97438 * 22 20 19 51 51 H 0.97004 * 120.00017 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0061 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3774 -2.3054 -0.1021 10 6 1.9192 -3.3649 -1.1704 11 6 1.6992 -3.2291 1.2957 12 8 2.4211 -2.7358 2.1363 13 7 1.1247 -4.4275 1.5200 14 6 1.3718 -5.1340 2.7794 15 1 2.3950 -4.9478 3.1058 16 6 0.3968 -4.6314 3.8460 17 6 1.1687 -6.6359 2.5700 18 7 2.0191 -7.0955 1.4638 19 6 1.8496 -8.5363 1.2330 20 6 2.7362 -8.9703 0.0942 21 8 3.4396 -8.1591 -0.4700 22 7 2.7466 -10.2597 -0.2981 23 6 3.5535 -10.6546 -1.3338 24 1 4.1804 -9.9325 -1.8355 25 6 3.5646 -11.9840 -1.7378 26 7 2.8022 -12.8628 -1.1269 27 14 4.6635 -12.5220 -3.1493 28 1 5.4167 -11.3505 -3.6645 29 1 5.6185 -13.5525 -2.6683 30 1 3.8285 -13.0905 -4.2377 31 1 -0.3634 -0.1072 1.0221 32 1 -0.3633 0.9386 -0.4183 33 1 -0.3633 -0.8316 -0.6038 34 1 1.6581 2.1327 -0.0004 35 1 4.1203 2.1327 0.0001 36 1 5.3517 0.0001 0.0005 37 1 4.1207 -2.1322 0.0110 38 1 1.3745 -4.3090 -1.1702 39 1 1.7351 -2.8391 -2.1073 40 1 2.9864 -3.5615 -1.0677 41 1 0.5477 -4.8222 0.8477 42 1 0.5804 -5.1574 4.7829 43 1 0.5415 -3.5614 3.9953 44 1 -0.6263 -4.8176 3.5197 45 1 1.4381 -7.1697 3.4813 46 1 0.1235 -6.8312 2.3300 47 1 1.8333 -6.5705 0.6225 48 1 2.1235 -9.0835 2.1350 49 1 0.8092 -8.7444 0.9836 50 1 2.1838 -10.9084 0.1528 51 1 2.8102 -13.7910 -1.4088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268717240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:40 Heat of formation + Delta-G solvation = -59.291823 kcal Electronic energy + Delta-G solvation = -30260.700455 eV Core-core repulsion = 26159.282589 eV Total energy + Delta-G solvation = -4101.417866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.59866 -39.14788 -38.30203 -36.71663 -34.47278 -34.26776 -33.63009 -32.81676 -31.28668 -31.06467 -29.36877 -27.62161 -27.01661 -25.20192 -24.88310 -23.34776 -22.63170 -21.56218 -20.72570 -20.02827 -19.26238 -17.93688 -17.36169 -16.88064 -16.29111 -16.12405 -15.61020 -15.39228 -14.99237 -14.84185 -14.52631 -14.37042 -14.20719 -13.91243 -13.79617 -13.67048 -13.48655 -13.20834 -13.09319 -12.80723 -12.66352 -12.57989 -12.37720 -12.25871 -12.00813 -11.94964 -11.79547 -11.66750 -11.63260 -11.47932 -11.10769 -11.04646 -10.95026 -10.83591 -10.36110 -10.24769 -9.74293 -9.54347 -9.14650 -8.84887 -8.68784 -8.49636 -8.11441 -7.98579 -6.44199 -3.84986 1.22777 1.33816 2.63246 3.08545 3.14647 3.25533 3.32737 3.71235 3.87647 4.03179 4.26108 4.37802 4.56269 4.72367 4.78562 4.80064 4.93683 4.98733 4.99690 5.06686 5.11439 5.16688 5.20544 5.25743 5.36870 5.40915 5.41944 5.48520 5.55106 5.57672 5.61039 5.62269 5.71259 5.74350 5.91128 5.93536 5.96410 6.01000 6.05058 6.07998 6.23195 6.37632 6.43943 6.46043 6.54501 6.92324 7.12441 7.42491 7.53212 7.57717 8.03986 8.20720 8.58532 9.15589 9.51629 10.02847 10.73541 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002160 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.945930 B =12960.953398 C =14363.958682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.082 4.082 7 C -0.063 4.063 8 C -0.078 4.078 9 H 0.106 0.894 10 C -0.143 4.143 11 C 0.524 3.476 12 O -0.530 6.530 13 N -0.723 5.723 14 C 0.145 3.855 15 H 0.097 0.903 16 C -0.161 4.161 17 C 0.050 3.950 18 N -0.666 5.666 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.032 0.968 47 H 0.347 0.653 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 22.190 5.008 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.144 4.144 6 C -0.100 4.100 7 C -0.063 4.063 8 C -0.099 4.099 9 H 0.124 0.876 10 C -0.201 4.201 11 C 0.310 3.690 12 O -0.405 6.405 13 N -0.375 5.375 14 C 0.040 3.960 15 H 0.115 0.885 16 C -0.220 4.220 17 C -0.080 4.080 18 N -0.299 5.299 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.050 0.950 47 H 0.167 0.833 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.612 22.794 5.600 24.675 hybrid contribution -0.970 -1.133 -1.047 1.822 sum -8.582 21.661 4.553 23.740 Atomic orbital electron populations 1.20855 0.91570 1.02670 1.02333 1.19687 0.95742 0.92623 1.00065 1.20920 0.94280 0.97079 1.02050 1.21092 0.94290 0.97940 1.00298 1.21106 0.99885 0.92445 1.00995 1.20965 0.93524 0.98295 0.97230 1.19112 0.93586 0.92593 1.01003 1.20405 1.01797 0.93463 0.94195 0.87620 1.21823 1.02977 0.98923 0.96338 1.20387 0.79408 0.80973 0.88244 1.90714 1.36753 1.66392 1.46644 1.46008 1.50909 1.20563 1.20021 1.21019 1.01113 0.90153 0.83715 0.88478 1.22144 0.99058 1.02102 0.98664 1.22308 0.94855 0.94017 0.96783 1.60014 1.56687 1.03317 1.09912 1.21696 0.97798 0.89461 0.99348 1.19799 0.87179 0.83591 0.86914 1.90529 1.45382 1.52312 1.58388 1.41871 1.39347 1.07255 1.31553 1.19747 1.19760 0.93846 1.09431 0.87871 1.25267 0.97959 0.95612 0.99161 1.69619 1.39368 1.03519 1.41789 0.85801 0.79493 0.78742 0.80325 1.19204 1.20721 1.20770 0.91221 0.91534 0.91247 0.86330 0.86343 0.86170 0.86055 0.91466 0.91264 0.91239 0.76970 0.91446 0.91962 0.92607 0.89505 0.95031 0.83296 0.89478 0.93884 0.77477 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.27 36.00 0.33 -0.55 16 2 C -0.08 -0.83 5.88 -104.63 -0.62 -1.45 16 3 C -0.13 -1.22 9.68 -39.59 -0.38 -1.60 16 4 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 5 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 6 C -0.08 -1.02 8.22 -39.58 -0.33 -1.34 16 7 C -0.06 -0.72 4.32 -104.63 -0.45 -1.17 16 8 C -0.08 -0.78 2.72 -92.92 -0.25 -1.04 16 9 H 0.11 0.83 5.55 -51.93 -0.29 0.54 16 10 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 11 C 0.52 6.52 7.02 -10.99 -0.08 6.44 16 12 O -0.53 -8.57 15.06 5.55 0.08 -8.48 16 13 N -0.72 -7.67 4.25 -53.81 -0.23 -7.89 16 14 C 0.14 1.61 2.88 -67.93 -0.20 1.42 16 15 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 16 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 17 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 18 N -0.67 -10.24 6.12 -115.06 -0.70 -10.94 16 19 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 20 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 21 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 22 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 23 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 27 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 6.34 -51.93 -0.33 0.12 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.57 7.26 -52.48 -0.38 1.19 16 38 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.80 7.10 -51.93 -0.37 0.43 16 41 H 0.40 3.42 7.57 -40.82 -0.31 3.11 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.35 5.41 7.28 -39.29 -0.29 5.12 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 51 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 418.37 15.07 6.30 6.30 Total: -1.00 -33.84 418.37 -9.34 -43.18 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -8.07 Total: 16.44 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.46 Total: -1.34 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.27 Total: -56.53 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.84 -9.34 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268717240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.109 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds