Wall clock time and date at job start Wed Apr 1 2020 04:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00107 * 2 1 4 4 C 1.38209 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.38220 * 119.99471 * 359.71037 * 5 4 3 7 7 C 1.38212 * 120.00398 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99470 * 0.02562 * 7 2 1 9 9 H 1.08994 * 109.47362 * 5.70604 * 8 7 2 10 10 C 1.52998 * 109.46849 * 125.70816 * 8 7 2 11 11 C 1.50699 * 109.47044 * 245.70176 * 8 7 2 12 12 O 1.21283 * 120.00100 * 0.02562 * 11 8 7 13 13 N 1.34777 * 119.99828 * 180.02562 * 11 8 7 14 14 C 1.46500 * 119.99838 * 180.02562 * 13 11 8 15 15 H 1.08998 * 109.47448 * 325.00370 * 14 13 11 16 16 C 1.53001 * 109.47457 * 85.00149 * 14 13 11 17 17 C 1.52998 * 109.47325 * 205.00083 * 14 13 11 18 18 N 1.46905 * 109.47059 * 54.99860 * 17 14 13 19 19 C 1.46894 * 110.99989 * 180.02562 * 18 17 14 20 20 C 1.50706 * 109.47095 * 180.02562 * 19 18 17 21 21 O 1.21294 * 119.99992 * 359.97438 * 20 19 18 22 22 N 1.34778 * 120.00192 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99955 * 180.02562 * 22 20 19 24 24 H 1.07992 * 119.99939 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99696 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00278 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 119.99897 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47184 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47404 * 119.99576 * 27 25 23 30 30 H 1.48498 * 109.47318 * 239.99790 * 27 25 23 31 31 H 1.09004 * 109.47546 * 264.01318 * 1 2 3 32 32 H 1.08993 * 109.47292 * 24.01912 * 1 2 3 33 33 H 1.08999 * 109.47039 * 144.01769 * 1 2 3 34 34 H 1.08010 * 119.99484 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00089 * 179.97438 * 4 3 2 36 36 H 1.07997 * 120.00291 * 179.97438 * 5 4 3 37 37 H 1.08004 * 119.99683 * 180.30023 * 6 5 4 38 38 H 1.09001 * 109.47407 * 179.97438 * 10 8 7 39 39 H 1.08999 * 109.47522 * 299.99717 * 10 8 7 40 40 H 1.09006 * 109.47404 * 60.00136 * 10 8 7 41 41 H 0.96995 * 120.00478 * 0.02562 * 13 11 8 42 42 H 1.08998 * 109.47263 * 179.97438 * 16 14 13 43 43 H 1.09003 * 109.47162 * 300.00430 * 16 14 13 44 44 H 1.08997 * 109.47106 * 59.99878 * 16 14 13 45 45 H 1.09001 * 109.47734 * 174.99820 * 17 14 13 46 46 H 1.09004 * 109.47244 * 295.00292 * 17 14 13 47 47 H 1.00898 * 111.00438 * 303.95840 * 18 17 14 48 48 H 1.08998 * 109.47421 * 299.99869 * 19 18 17 49 49 H 1.08994 * 109.47647 * 60.00368 * 19 18 17 50 50 H 0.96995 * 119.99767 * 359.97438 * 22 20 19 51 51 H 0.97004 * 120.00017 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0061 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3774 -2.3054 -0.1021 10 6 1.9192 -3.3649 -1.1704 11 6 1.6992 -3.2291 1.2957 12 8 2.4211 -2.7358 2.1363 13 7 1.1247 -4.4275 1.5200 14 6 1.3718 -5.1340 2.7794 15 1 2.3950 -4.9478 3.1058 16 6 0.3968 -4.6314 3.8460 17 6 1.1687 -6.6359 2.5700 18 7 2.0191 -7.0955 1.4638 19 6 1.8496 -8.5363 1.2330 20 6 2.7362 -8.9703 0.0942 21 8 3.4396 -8.1591 -0.4700 22 7 2.7466 -10.2597 -0.2981 23 6 3.5535 -10.6546 -1.3338 24 1 4.1804 -9.9325 -1.8355 25 6 3.5646 -11.9840 -1.7378 26 7 2.8022 -12.8628 -1.1269 27 14 4.6635 -12.5220 -3.1493 28 1 5.4167 -11.3505 -3.6645 29 1 5.6185 -13.5525 -2.6683 30 1 3.8285 -13.0905 -4.2377 31 1 -0.3634 -0.1072 1.0221 32 1 -0.3633 0.9386 -0.4183 33 1 -0.3633 -0.8316 -0.6038 34 1 1.6581 2.1327 -0.0004 35 1 4.1203 2.1327 0.0001 36 1 5.3517 0.0001 0.0005 37 1 4.1207 -2.1322 0.0110 38 1 1.3745 -4.3090 -1.1702 39 1 1.7351 -2.8391 -2.1073 40 1 2.9864 -3.5615 -1.0677 41 1 0.5477 -4.8222 0.8477 42 1 0.5804 -5.1574 4.7829 43 1 0.5415 -3.5614 3.9953 44 1 -0.6263 -4.8176 3.5197 45 1 1.4381 -7.1697 3.4813 46 1 0.1235 -6.8312 2.3300 47 1 1.8333 -6.5705 0.6225 48 1 2.1235 -9.0835 2.1350 49 1 0.8092 -8.7444 0.9836 50 1 2.1838 -10.9084 0.1528 51 1 2.8102 -13.7910 -1.4088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268717240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:37 Heat of formation + Delta-G solvation = -82.689824 kcal Electronic energy + Delta-G solvation = -30261.715069 eV Core-core repulsion = 26159.282589 eV Total energy + Delta-G solvation = -4102.432480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.49900 -40.22783 -39.87698 -37.83948 -36.02644 -35.35750 -35.01861 -33.55316 -33.25364 -32.02201 -30.18377 -28.97216 -27.69323 -26.72491 -25.87585 -24.66674 -23.52524 -22.36611 -21.63058 -21.13220 -20.82943 -19.90727 -18.40007 -17.84369 -17.54813 -17.18710 -16.86722 -16.45431 -16.37712 -16.07032 -15.74069 -15.67154 -15.39356 -15.08495 -15.04020 -14.57067 -14.42003 -14.30998 -14.03527 -13.96173 -13.62346 -13.51239 -13.29370 -13.23614 -13.10897 -13.04024 -12.97140 -12.80481 -12.74914 -12.67929 -12.47889 -12.40192 -12.12349 -11.95403 -11.79683 -11.59231 -11.51436 -10.74217 -10.36275 -10.07043 -10.01161 -9.67163 -9.47165 -9.31807 -8.47087 -5.95359 0.42606 0.51789 1.36064 1.41736 1.55498 1.66362 2.05628 2.21188 2.28897 2.87321 2.92321 3.20530 3.50367 3.56651 3.77243 3.86070 4.02209 4.05424 4.15264 4.20108 4.20996 4.26209 4.29438 4.38815 4.46391 4.50438 4.59889 4.63121 4.67740 4.72599 4.75666 4.79784 4.80795 4.83990 4.91351 4.98515 5.09461 5.16086 5.23534 5.27306 5.32701 5.41179 5.54691 5.60145 5.64155 5.73855 5.87192 6.09191 6.14881 6.38735 6.55031 6.60359 7.13048 7.28370 7.56799 8.12330 8.70398 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002160 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.945930 B =12960.953398 C =14363.958682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.143 4.143 6 C -0.108 4.108 7 C -0.079 4.079 8 C -0.069 4.069 9 H 0.135 0.865 10 C -0.140 4.140 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.713 5.713 14 C 0.146 3.854 15 H 0.062 0.938 16 C -0.151 4.151 17 C 0.057 3.943 18 N -0.687 5.687 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.331 4.331 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.275 1.275 29 H -0.272 1.272 30 H -0.269 1.269 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.408 0.592 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.344 0.656 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 22.541 5.057 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.161 4.161 6 C -0.126 4.126 7 C -0.079 4.079 8 C -0.090 4.090 9 H 0.152 0.848 10 C -0.197 4.197 11 C 0.307 3.693 12 O -0.452 6.452 13 N -0.366 5.366 14 C 0.042 3.958 15 H 0.080 0.920 16 C -0.209 4.209 17 C -0.072 4.072 18 N -0.321 5.321 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.461 4.461 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.199 1.199 29 H -0.197 1.197 30 H -0.194 1.194 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.245 0.755 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.163 0.837 48 H 0.122 0.878 49 H 0.092 0.908 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.051 23.114 5.664 25.833 hybrid contribution -0.206 -1.188 -1.024 1.582 sum -10.257 21.926 4.640 24.647 Atomic orbital electron populations 1.20914 0.89394 1.04202 1.02799 1.20081 0.97453 0.92235 0.99177 1.21324 0.94398 0.98077 1.01006 1.21415 0.94849 0.98284 0.99463 1.21316 1.00562 0.92717 1.01518 1.20994 0.94485 0.98030 0.99125 1.19318 0.93334 0.93802 1.01472 1.20409 1.03215 0.92670 0.92699 0.84790 1.21795 1.01351 0.99562 0.96991 1.20827 0.78656 0.81259 0.88534 1.90691 1.38700 1.67608 1.48244 1.45952 1.50443 1.19929 1.20235 1.20954 0.99937 0.90490 0.84456 0.92001 1.22047 0.99417 1.00962 0.98507 1.22356 0.95699 0.93550 0.95619 1.59979 1.58818 1.02473 1.10808 1.21551 0.97657 0.90490 0.97021 1.20943 0.86760 0.82477 0.87452 1.90503 1.47171 1.53247 1.60082 1.41931 1.39470 1.08189 1.31446 1.19663 1.21140 0.94159 1.11137 0.90509 1.26009 0.98949 0.95141 1.01176 1.69670 1.39866 1.03901 1.42593 0.84899 0.77929 0.78031 0.77655 1.19947 1.19740 1.19448 0.91055 0.89751 0.90108 0.83701 0.83973 0.85435 0.88207 0.90589 0.89917 0.93908 0.75550 0.90146 0.93689 0.90549 0.88487 0.92085 0.83709 0.87752 0.90833 0.76913 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.27 71.23 0.66 -0.81 16 2 C -0.09 -1.74 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.34 9.68 22.27 0.22 -2.13 16 4 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 5 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 6 C -0.11 -2.89 8.22 22.27 0.18 -2.71 16 7 C -0.08 -1.84 4.32 -19.87 -0.09 -1.93 16 8 C -0.07 -1.39 2.72 -12.29 -0.03 -1.42 16 9 H 0.13 1.86 5.55 -2.39 -0.01 1.85 16 10 C -0.14 -2.80 8.84 71.98 0.64 -2.16 16 11 C 0.52 13.20 7.02 87.66 0.61 13.82 16 12 O -0.57 -19.55 15.06 -3.04 -0.05 -19.60 16 13 N -0.71 -14.70 4.25 -442.53 -1.88 -16.58 16 14 C 0.15 3.15 2.88 44.99 0.13 3.28 16 15 H 0.06 1.79 7.58 -2.39 -0.02 1.78 16 16 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 17 C 0.06 1.14 5.30 86.30 0.46 1.60 16 18 N -0.69 -20.32 6.12 -517.93 -3.17 -23.48 16 19 C 0.07 2.08 6.17 85.56 0.53 2.61 16 20 C 0.44 20.26 7.82 87.66 0.69 20.94 16 21 O -0.62 -34.21 15.78 -3.07 -0.05 -34.26 16 22 N -0.57 -28.85 5.29 -306.98 -1.62 -30.48 16 23 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 24 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 25 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 26 N -0.92 -49.02 13.05 21.66 0.28 -48.73 16 27 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.08 0.76 8.04 -2.39 -0.02 0.74 16 33 H 0.08 0.81 6.34 -2.39 -0.02 0.80 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.10 2.96 7.26 -2.91 -0.02 2.94 16 38 H 0.08 1.35 7.56 -2.39 -0.02 1.33 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.08 7.10 -2.38 -0.02 1.06 16 41 H 0.41 6.40 7.57 -92.71 -0.70 5.70 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.34 10.48 7.28 -89.70 -0.65 9.82 16 48 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 51 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -76.34 418.37 0.71 -75.63 By element: Atomic # 1 Polarization: 49.74 SS G_CDS: -1.12 Total: 48.62 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.29 Total: 4.09 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.39 Total: -119.27 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.09 Total: -53.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -76.34 0.71 -75.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268717240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.056 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds