Wall clock time and date at job start Wed Apr 1 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.85436 * 2 1 4 4 C 1.37931 * 120.14918 * 180.02562 * 3 2 1 5 5 C 1.39602 * 119.85142 * 359.97114 * 4 3 2 6 6 C 1.47840 * 120.14487 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00095 * 200.34150 * 6 5 4 8 8 N 1.34773 * 120.00066 * 20.33293 * 6 5 4 9 9 C 1.46493 * 120.00304 * 7.14052 * 8 6 5 10 10 C 1.46507 * 119.99847 * 187.13338 * 8 6 5 11 11 H 1.08998 * 109.47307 * 0.02562 * 10 8 6 12 12 C 1.53009 * 109.46785 * 120.00458 * 10 8 6 13 13 C 1.52998 * 109.47181 * 240.00339 * 10 8 6 14 14 N 1.46896 * 109.47188 * 55.00497 * 13 10 8 15 15 C 1.46900 * 110.99998 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47201 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99647 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00075 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00043 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99899 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00208 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00237 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47195 * 89.99927 * 23 21 19 25 25 H 1.48504 * 109.47289 * 209.99805 * 23 21 19 26 26 H 1.48499 * 109.46977 * 329.99748 * 23 21 19 27 27 C 1.39555 * 119.71004 * 0.25470 * 5 4 3 28 28 C 1.37984 * 119.85091 * 359.51612 * 27 5 4 29 29 C 1.50703 * 119.92663 * 180.22927 * 28 27 5 30 30 H 1.08997 * 109.47169 * 90.00604 * 1 2 3 31 31 H 1.09004 * 109.46815 * 210.00613 * 1 2 3 32 32 H 1.09003 * 109.47334 * 330.00191 * 1 2 3 33 33 H 1.07997 * 119.92696 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.08005 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47172 * 266.86763 * 9 8 6 36 36 H 1.09003 * 109.46895 * 26.86816 * 9 8 6 37 37 H 1.09005 * 109.47427 * 146.86192 * 9 8 6 38 38 H 1.08998 * 109.47059 * 60.00019 * 12 10 8 39 39 H 1.08995 * 109.47107 * 180.02562 * 12 10 8 40 40 H 1.09002 * 109.46832 * 300.00101 * 12 10 8 41 41 H 1.09001 * 109.46779 * 175.00520 * 13 10 8 42 42 H 1.08998 * 109.47034 * 294.99677 * 13 10 8 43 43 H 1.00903 * 110.99840 * 56.04312 * 14 13 10 44 44 H 1.09002 * 109.47104 * 300.00114 * 15 14 13 45 45 H 1.09005 * 109.46904 * 60.00172 * 15 14 13 46 46 H 0.97004 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99822 * 180.02562 * 22 21 19 48 48 H 1.08004 * 120.07582 * 179.74743 * 27 5 4 49 49 H 1.09006 * 109.47095 * 270.25709 * 29 28 27 50 50 H 1.08997 * 109.47071 * 30.25706 * 29 28 27 51 51 H 1.09000 * 109.46927 * 150.25226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7546 0.0001 -0.0016 7 8 6.3622 -0.9871 -0.3675 8 7 6.4288 1.0947 0.4029 9 6 5.7054 2.2253 0.9899 10 6 7.8853 1.1540 0.2557 11 1 8.2427 0.2291 -0.1970 12 6 8.2596 2.3373 -0.6393 13 6 8.5302 1.3313 1.6317 14 7 8.0752 0.2595 2.5274 15 6 8.6760 0.3974 3.8609 16 6 8.1865 -0.7166 4.7500 17 8 7.4130 -1.5437 4.3156 18 7 8.6076 -0.7932 6.0279 19 6 8.1619 -1.8064 6.8370 20 1 7.4737 -2.5434 6.4500 21 6 8.5963 -1.8858 8.1544 22 7 8.1696 -2.8572 8.9296 23 14 9.7872 -0.6115 8.8235 24 1 9.0240 0.5223 9.4044 25 1 10.6336 -1.2292 9.8757 26 1 10.6505 -0.1144 7.7222 27 6 3.5755 -1.2068 -0.0052 28 6 2.1956 -1.1998 0.0001 29 6 1.4372 -2.5020 0.0002 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5140 32 1 -0.3634 0.8900 0.5138 33 1 1.6523 2.1334 0.0004 34 1 4.1116 2.1446 -0.0010 35 1 5.4632 2.9464 0.2092 36 1 4.7853 1.8673 1.4520 37 1 6.3292 2.7032 1.7453 38 1 7.9022 3.2623 -0.1869 39 1 9.3431 2.3811 -0.7492 40 1 7.8001 2.2109 -1.6196 41 1 9.6148 1.2865 1.5331 42 1 8.2427 2.2976 2.0459 43 1 8.2727 -0.6485 2.1343 44 1 9.7616 0.3459 3.7774 45 1 8.3897 1.3573 4.2908 46 1 9.2254 -0.1311 6.3756 47 1 8.4726 -2.9123 9.8494 48 1 4.1119 -2.1442 -0.0093 49 1 1.2543 -2.8161 -1.0275 50 1 2.0233 -3.2638 0.5141 51 1 0.4853 -2.3680 0.5141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271189850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:59 Heat of formation + Delta-G solvation = -21.077558 kcal Electronic energy + Delta-G solvation = -30674.480890 eV Core-core repulsion = 26574.720119 eV Total energy + Delta-G solvation = -4099.760771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63734 -39.03324 -38.37471 -36.78619 -34.97179 -33.98064 -33.51553 -32.24182 -31.65875 -31.41757 -28.12893 -27.73117 -27.19810 -26.59337 -24.98420 -23.27978 -22.74992 -21.95761 -20.68877 -19.54257 -19.22917 -18.27127 -17.15265 -16.71733 -16.20513 -15.75138 -15.57863 -15.42239 -15.16881 -14.77730 -14.47508 -14.44739 -14.17491 -13.96556 -13.64278 -13.57338 -13.27878 -13.19797 -12.99210 -12.90586 -12.69330 -12.67580 -12.53869 -12.31745 -12.18033 -12.07828 -11.97832 -11.65469 -11.63417 -11.51928 -11.36970 -11.13768 -10.96846 -10.77672 -10.57837 -9.94806 -9.73060 -9.53987 -8.92174 -8.66781 -8.62229 -8.48062 -8.15479 -8.07391 -6.28024 -3.79198 0.83753 1.27397 2.84688 2.98717 3.03813 3.07984 3.15993 3.77946 3.78674 4.08361 4.13012 4.46155 4.60307 4.65271 4.78795 4.81589 4.87079 4.95554 4.98363 5.02077 5.16290 5.19876 5.25193 5.28521 5.30705 5.37860 5.40295 5.46730 5.48993 5.50629 5.57479 5.63891 5.65280 5.67760 5.72152 5.82937 5.85485 5.93484 5.94861 5.97262 6.03371 6.21884 6.28120 6.47641 6.56602 6.83700 7.14379 7.41860 7.61249 7.63345 8.18315 8.27666 8.63666 8.98757 9.45928 9.87423 10.85340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.002711 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.521974 B =10324.593967 C =12162.645098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.129 4.129 6 C 0.568 3.432 7 O -0.537 6.537 8 N -0.588 5.588 9 C 0.072 3.928 10 C 0.138 3.862 11 H 0.101 0.899 12 C -0.158 4.158 13 C 0.047 3.953 14 N -0.663 5.663 15 C 0.049 3.951 16 C 0.450 3.550 17 O -0.560 6.560 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.883 5.883 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.053 4.053 28 C -0.097 4.097 29 C -0.118 4.118 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.354 0.646 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.134 0.866 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 14.943 -20.418 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.129 4.129 5 C -0.132 4.132 6 C 0.357 3.643 7 O -0.415 6.415 8 N -0.320 5.320 9 C -0.070 4.070 10 C 0.034 3.966 11 H 0.119 0.881 12 C -0.216 4.216 13 C -0.083 4.083 14 N -0.295 5.295 15 C -0.084 4.084 16 C 0.236 3.764 17 O -0.441 6.441 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.072 4.072 28 C -0.097 4.097 29 C -0.174 4.174 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.174 0.826 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.152 0.848 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.188 14.058 -20.508 26.507 hybrid contribution 1.978 0.834 0.802 2.291 sum -7.210 14.892 -19.706 25.731 Atomic orbital electron populations 1.20915 0.91203 1.03148 1.02388 1.19961 0.96103 0.92727 0.97937 1.20948 0.93949 0.97486 1.02454 1.22201 0.94641 0.98451 0.97615 1.19845 0.92910 0.94368 1.06049 1.18231 0.86988 0.82237 0.76840 1.90748 1.69716 1.32358 1.48663 1.47331 1.06597 1.16925 1.61163 1.22282 0.98411 0.88757 0.97573 1.21096 0.79902 1.00507 0.95065 0.88124 1.22091 1.01956 0.97877 0.99724 1.22352 0.96820 0.96468 0.92683 1.60005 1.61751 1.06426 1.01356 1.21699 0.96542 0.99378 0.90761 1.19729 0.85764 0.88096 0.82833 1.90591 1.36967 1.42591 1.73956 1.42206 1.43028 1.27393 1.10634 1.19433 1.26244 1.05515 0.92000 0.86340 1.25032 0.98029 0.97213 0.95948 1.69624 1.44053 1.31142 1.07490 0.86666 0.81322 0.81807 0.79536 1.19647 1.20223 1.19575 1.21162 0.93135 0.97879 0.95019 1.19721 0.93360 0.95225 1.01403 1.20871 1.00115 0.94057 1.02360 0.91004 0.90880 0.91452 0.85701 0.83432 0.92738 0.89544 0.91013 0.92131 0.91310 0.92056 0.94415 0.90822 0.82646 0.93937 0.89715 0.79773 0.91667 0.84815 0.91139 0.91127 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.59 36.01 0.35 -0.51 16 2 C -0.07 -0.68 5.89 -104.53 -0.62 -1.29 16 3 C -0.13 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.11 -1.18 7.63 -39.19 -0.30 -1.47 16 5 C -0.13 -1.77 5.56 -104.97 -0.58 -2.35 16 6 C 0.57 8.75 7.52 -12.33 -0.09 8.66 16 7 O -0.54 -10.10 15.88 5.32 0.08 -10.01 16 8 N -0.59 -7.27 2.49 -175.04 -0.43 -7.70 16 9 C 0.07 0.68 7.72 59.84 0.46 1.14 16 10 C 0.14 1.56 2.88 -67.92 -0.20 1.37 16 11 H 0.10 1.35 6.92 -51.93 -0.36 0.99 16 12 C -0.16 -1.25 9.19 37.16 0.34 -0.91 16 13 C 0.05 0.55 4.92 -3.83 -0.02 0.53 16 14 N -0.66 -10.83 5.85 -115.06 -0.67 -11.50 16 15 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 16 C 0.45 10.59 7.82 -10.99 -0.09 10.51 16 17 O -0.56 -15.75 15.78 5.55 0.09 -15.66 16 18 N -0.59 -14.50 5.09 -10.96 -0.06 -14.55 16 19 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 20 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.25 13.96 55.50 0.77 -25.48 16 23 Si 0.88 19.67 27.74 -169.99 -4.71 14.96 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 27 C -0.05 -0.74 9.24 -39.18 -0.36 -1.10 16 28 C -0.10 -1.12 5.87 -104.68 -0.61 -1.74 16 29 C -0.12 -1.08 9.59 36.01 0.35 -0.74 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.49 5.93 -51.93 -0.31 0.18 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.20 4.03 -52.49 -0.21 0.99 16 35 H 0.05 0.36 6.96 -51.93 -0.36 0.00 16 36 H 0.09 0.88 5.32 -51.93 -0.28 0.61 16 37 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 38 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 43 H 0.35 6.55 8.43 -39.29 -0.33 6.22 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.13 1.98 7.78 -52.48 -0.41 1.57 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 51 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -36.54 407.53 -8.50 -45.03 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -7.67 Total: 15.42 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.04 Total: 3.36 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.39 Total: -59.24 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: 0.17 Total: -25.68 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.96 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.54 -8.50 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271189850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.957 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds