Wall clock time and date at job start Wed Apr 1 2020 04:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.85436 * 2 1 4 4 C 1.37931 * 120.14918 * 180.02562 * 3 2 1 5 5 C 1.39602 * 119.85142 * 359.97114 * 4 3 2 6 6 C 1.47840 * 120.14487 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00095 * 200.34150 * 6 5 4 8 8 N 1.34773 * 120.00066 * 20.33293 * 6 5 4 9 9 C 1.46493 * 120.00304 * 7.14052 * 8 6 5 10 10 C 1.46507 * 119.99847 * 187.13338 * 8 6 5 11 11 H 1.08998 * 109.47307 * 0.02562 * 10 8 6 12 12 C 1.53009 * 109.46785 * 120.00458 * 10 8 6 13 13 C 1.52998 * 109.47181 * 240.00339 * 10 8 6 14 14 N 1.46896 * 109.47188 * 55.00497 * 13 10 8 15 15 C 1.46900 * 110.99998 * 179.97438 * 14 13 10 16 16 C 1.50700 * 109.47201 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99647 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00075 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00043 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99899 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00208 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00237 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47195 * 89.99927 * 23 21 19 25 25 H 1.48504 * 109.47289 * 209.99805 * 23 21 19 26 26 H 1.48499 * 109.46977 * 329.99748 * 23 21 19 27 27 C 1.39555 * 119.71004 * 0.25470 * 5 4 3 28 28 C 1.37984 * 119.85091 * 359.51612 * 27 5 4 29 29 C 1.50703 * 119.92663 * 180.22927 * 28 27 5 30 30 H 1.08997 * 109.47169 * 90.00604 * 1 2 3 31 31 H 1.09004 * 109.46815 * 210.00613 * 1 2 3 32 32 H 1.09003 * 109.47334 * 330.00191 * 1 2 3 33 33 H 1.07997 * 119.92696 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.08005 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47172 * 266.86763 * 9 8 6 36 36 H 1.09003 * 109.46895 * 26.86816 * 9 8 6 37 37 H 1.09005 * 109.47427 * 146.86192 * 9 8 6 38 38 H 1.08998 * 109.47059 * 60.00019 * 12 10 8 39 39 H 1.08995 * 109.47107 * 180.02562 * 12 10 8 40 40 H 1.09002 * 109.46832 * 300.00101 * 12 10 8 41 41 H 1.09001 * 109.46779 * 175.00520 * 13 10 8 42 42 H 1.08998 * 109.47034 * 294.99677 * 13 10 8 43 43 H 1.00903 * 110.99840 * 56.04312 * 14 13 10 44 44 H 1.09002 * 109.47104 * 300.00114 * 15 14 13 45 45 H 1.09005 * 109.46904 * 60.00172 * 15 14 13 46 46 H 0.97004 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99822 * 180.02562 * 22 21 19 48 48 H 1.08004 * 120.07582 * 179.74743 * 27 5 4 49 49 H 1.09006 * 109.47095 * 270.25709 * 29 28 27 50 50 H 1.08997 * 109.47071 * 30.25706 * 29 28 27 51 51 H 1.09000 * 109.46927 * 150.25226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7546 0.0001 -0.0016 7 8 6.3622 -0.9871 -0.3675 8 7 6.4288 1.0947 0.4029 9 6 5.7054 2.2253 0.9899 10 6 7.8853 1.1540 0.2557 11 1 8.2427 0.2291 -0.1970 12 6 8.2596 2.3373 -0.6393 13 6 8.5302 1.3313 1.6317 14 7 8.0752 0.2595 2.5274 15 6 8.6760 0.3974 3.8609 16 6 8.1865 -0.7166 4.7500 17 8 7.4130 -1.5437 4.3156 18 7 8.6076 -0.7932 6.0279 19 6 8.1619 -1.8064 6.8370 20 1 7.4737 -2.5434 6.4500 21 6 8.5963 -1.8858 8.1544 22 7 8.1696 -2.8572 8.9296 23 14 9.7872 -0.6115 8.8235 24 1 9.0240 0.5223 9.4044 25 1 10.6336 -1.2292 9.8757 26 1 10.6505 -0.1144 7.7222 27 6 3.5755 -1.2068 -0.0052 28 6 2.1956 -1.1998 0.0001 29 6 1.4372 -2.5020 0.0002 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5140 32 1 -0.3634 0.8900 0.5138 33 1 1.6523 2.1334 0.0004 34 1 4.1116 2.1446 -0.0010 35 1 5.4632 2.9464 0.2092 36 1 4.7853 1.8673 1.4520 37 1 6.3292 2.7032 1.7453 38 1 7.9022 3.2623 -0.1869 39 1 9.3431 2.3811 -0.7492 40 1 7.8001 2.2109 -1.6196 41 1 9.6148 1.2865 1.5331 42 1 8.2427 2.2976 2.0459 43 1 8.2727 -0.6485 2.1343 44 1 9.7616 0.3459 3.7774 45 1 8.3897 1.3573 4.2908 46 1 9.2254 -0.1311 6.3756 47 1 8.4726 -2.9123 9.8494 48 1 4.1119 -2.1442 -0.0093 49 1 1.2543 -2.8161 -1.0275 50 1 2.0233 -3.2638 0.5141 51 1 0.4853 -2.3680 0.5141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271189850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:58 Heat of formation + Delta-G solvation = -48.444929 kcal Electronic energy + Delta-G solvation = -30675.667629 eV Core-core repulsion = 26574.720119 eV Total energy + Delta-G solvation = -4100.947510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60790 -40.35251 -39.83958 -37.93502 -36.29810 -35.78715 -34.55775 -33.77022 -33.05913 -32.33640 -29.11636 -28.92949 -27.95453 -27.44876 -26.61270 -24.57876 -23.74806 -22.80713 -21.59544 -21.30512 -20.51452 -20.11738 -18.15296 -17.93685 -17.55245 -17.08055 -16.68121 -16.54119 -16.44845 -16.11629 -15.67838 -15.52604 -15.18505 -15.11800 -14.94555 -14.72303 -14.48904 -14.34584 -14.29734 -14.04898 -13.80570 -13.60790 -13.44448 -13.36287 -13.16739 -13.13239 -12.93355 -12.80684 -12.68972 -12.49359 -12.43438 -12.38921 -12.22939 -11.99393 -11.81131 -11.60110 -11.53822 -10.82778 -10.48509 -10.27654 -9.83346 -9.57075 -9.44451 -9.31209 -8.43561 -6.05201 -0.08066 0.40107 1.28175 1.34379 1.43442 1.82029 1.93362 2.06748 2.21479 2.70720 2.84983 3.12229 3.35739 3.55522 3.80256 3.87526 3.94807 3.98546 4.10840 4.20121 4.20840 4.27099 4.32610 4.38812 4.43213 4.51466 4.61731 4.64231 4.67343 4.68603 4.73096 4.79730 4.80913 4.82747 4.93207 4.96938 4.98900 5.10085 5.15672 5.27506 5.32646 5.36262 5.41761 5.50356 5.65236 5.68006 5.87885 6.01542 6.04799 6.26398 6.42296 6.57627 6.85661 7.20003 7.36830 7.95103 8.74570 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.002711 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.521974 B =10324.593967 C =12162.645098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.104 4.104 5 C -0.157 4.157 6 C 0.553 3.447 7 O -0.593 6.593 8 N -0.583 5.583 9 C 0.064 3.936 10 C 0.133 3.867 11 H 0.067 0.933 12 C -0.146 4.146 13 C 0.051 3.949 14 N -0.684 5.684 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.589 5.589 19 C -0.331 4.331 20 H 0.049 0.951 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.231 1.231 27 C -0.088 4.088 28 C -0.110 4.110 29 C -0.117 4.117 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.334 0.666 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.391 0.609 47 H 0.280 0.720 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 20.787 -20.483 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.160 4.160 6 C 0.344 3.656 7 O -0.475 6.475 8 N -0.313 5.313 9 C -0.077 4.077 10 C 0.030 3.970 11 H 0.085 0.915 12 C -0.204 4.204 13 C -0.078 4.078 14 N -0.315 5.315 15 C -0.067 4.067 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.067 0.933 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.789 3.211 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.154 1.154 27 C -0.107 4.107 28 C -0.110 4.110 29 C -0.173 4.173 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.138 0.862 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.120 0.880 49 H 0.101 0.899 50 H 0.073 0.927 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.526 19.978 -20.581 29.923 hybrid contribution 1.655 -1.066 0.780 2.118 sum -6.870 18.913 -19.801 28.231 Atomic orbital electron populations 1.20992 0.88657 1.04181 1.03643 1.20410 0.97971 0.92185 0.96275 1.21430 0.93626 0.98780 1.00678 1.22494 0.95330 0.98017 0.96290 1.19935 0.92278 0.95622 1.08121 1.18694 0.87928 0.82390 0.76608 1.90700 1.70835 1.34496 1.51504 1.47480 1.07216 1.16719 1.59894 1.22541 0.97988 0.88179 0.99021 1.21223 0.79312 1.00791 0.95717 0.91485 1.22010 1.02999 0.96801 0.98600 1.22488 0.98022 0.95668 0.91646 1.60034 1.62894 1.06697 1.01922 1.21635 0.98084 0.97335 0.89651 1.21108 0.84030 0.88670 0.82884 1.90576 1.39360 1.45227 1.75054 1.42005 1.43600 1.26847 1.10690 1.18985 1.26949 1.06430 0.93671 0.93257 1.26179 0.99982 1.00002 0.95323 1.69816 1.45753 1.33806 1.08254 0.85309 0.78285 0.78031 0.79497 1.17826 1.19949 1.15415 1.21149 0.94562 0.97203 0.97775 1.19982 0.92475 0.97107 1.01469 1.20913 1.00377 0.92803 1.03226 0.89453 0.90580 0.89721 0.81946 0.80717 0.88874 0.90575 0.89735 0.89789 0.89755 0.92565 0.92342 0.88137 0.84866 0.90667 0.86192 0.77360 0.91075 0.88015 0.89893 0.92697 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.59 71.24 0.68 -0.69 16 2 C -0.07 -1.29 5.89 -19.81 -0.12 -1.40 16 3 C -0.13 -2.13 9.68 22.23 0.22 -1.92 16 4 C -0.10 -2.07 7.63 22.53 0.17 -1.90 16 5 C -0.16 -4.59 5.56 -20.09 -0.11 -4.71 16 6 C 0.55 18.38 7.52 86.79 0.65 19.04 16 7 O -0.59 -25.03 15.88 -3.89 -0.06 -25.09 16 8 N -0.58 -14.21 2.49 -825.99 -2.05 -16.26 16 9 C 0.06 1.02 7.72 127.77 0.99 2.00 16 10 C 0.13 2.89 2.88 44.99 0.13 3.02 16 11 H 0.07 1.92 6.92 -2.39 -0.02 1.90 16 12 C -0.15 -1.87 9.19 71.99 0.66 -1.21 16 13 C 0.05 1.05 4.92 86.30 0.42 1.47 16 14 N -0.68 -21.89 5.85 -517.94 -3.03 -24.92 16 15 C 0.07 2.06 6.17 85.56 0.53 2.58 16 16 C 0.45 21.22 7.82 87.66 0.69 21.91 16 17 O -0.62 -37.03 15.78 -3.07 -0.05 -37.08 16 18 N -0.59 -28.80 5.09 -306.99 -1.56 -30.37 16 19 C -0.33 -20.12 10.16 84.04 0.85 -19.27 16 20 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 22 N -0.94 -57.76 13.96 21.66 0.30 -57.46 16 23 Si 0.97 39.31 27.74 68.60 1.90 41.21 16 24 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 27 C -0.09 -2.75 9.24 22.53 0.21 -2.54 16 28 C -0.11 -2.69 5.87 -19.90 -0.12 -2.81 16 29 C -0.12 -2.29 9.59 71.24 0.68 -1.61 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.85 5.93 -2.38 -0.01 0.83 16 32 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.18 2.33 4.03 -2.91 -0.01 2.32 16 35 H 0.09 0.79 6.96 -2.39 -0.02 0.78 16 36 H 0.08 1.41 5.32 -2.39 -0.01 1.40 16 37 H 0.08 1.16 6.54 -2.38 -0.02 1.14 16 38 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.56 6.90 -2.39 -0.02 1.54 16 43 H 0.33 12.95 8.43 -89.69 -0.76 12.19 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.12 3.01 8.14 -2.38 -0.02 3.00 16 46 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 47 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 48 H 0.10 3.66 7.78 -2.91 -0.02 3.64 16 49 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 51 H 0.09 1.38 5.93 -2.39 -0.01 1.37 16 Total: -1.00 -92.64 407.53 2.08 -90.56 By element: Atomic # 1 Polarization: 48.28 SS G_CDS: -0.38 Total: 47.90 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 7.01 Total: 11.49 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -6.34 Total: -129.00 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.11 Total: -62.17 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.21 kcal Total: -92.64 2.08 -90.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271189850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -92.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds