Wall clock time and date at job start Wed Apr 1 2020 04:19:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38228 * 120.00201 * 2 1
4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1
5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2
6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3
7 7 C 1.50706 * 109.46982 * 90.00130 * 6 5 4
8 8 O 1.21279 * 119.99882 * 0.02562 * 7 6 5
9 9 N 1.34774 * 120.00014 * 180.02562 * 7 6 5
10 10 C 1.46499 * 119.99738 * 180.02562 * 9 7 6
11 11 H 1.08999 * 109.47660 * 324.99741 * 10 9 7
12 12 C 1.53000 * 109.47171 * 85.00353 * 10 9 7
13 13 C 1.53004 * 109.47009 * 204.99950 * 10 9 7
14 14 C 1.53000 * 109.46831 * 65.00091 * 13 10 9
15 15 N 1.46905 * 109.46763 * 179.97438 * 14 13 10
16 16 C 1.46901 * 110.99723 * 180.02562 * 15 14 13
17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14
18 18 O 1.21298 * 120.00334 * 0.02562 * 17 16 15
19 19 N 1.34776 * 120.00068 * 179.97438 * 17 16 15
20 20 C 1.37103 * 120.00126 * 179.97438 * 19 17 16
21 21 H 1.07995 * 120.00032 * 0.02562 * 20 19 17
22 22 C 1.38952 * 120.00139 * 180.02562 * 20 19 17
23 23 N 1.31411 * 119.99927 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00294 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.46962 * 59.99745 * 24 22 20
26 26 H 1.48494 * 109.47320 * 179.97438 * 24 22 20
27 27 H 1.48504 * 109.46856 * 300.00446 * 24 22 20
28 28 C 1.38234 * 120.00240 * 0.26327 * 5 4 3
29 29 C 1.38234 * 119.99739 * 179.71804 * 2 1 3
30 30 H 1.09008 * 109.47424 * 270.28049 * 1 2 3
31 31 H 1.09002 * 109.47258 * 30.27549 * 1 2 3
32 32 H 1.08998 * 109.47359 * 150.27651 * 1 2 3
33 33 H 1.08004 * 120.00256 * 359.97438 * 3 2 1
34 34 H 1.08002 * 120.00519 * 179.76445 * 4 3 2
35 35 H 1.08988 * 109.47584 * 210.00457 * 6 5 4
36 36 H 1.09000 * 109.47013 * 330.00974 * 6 5 4
37 37 H 0.96998 * 119.99975 * 0.02562 * 9 7 6
38 38 H 1.08994 * 109.47624 * 59.99521 * 12 10 9
39 39 H 1.08999 * 109.47133 * 180.02562 * 12 10 9
40 40 H 1.09006 * 109.46954 * 299.99750 * 12 10 9
41 41 H 1.09000 * 109.47148 * 185.00082 * 13 10 9
42 42 H 1.08998 * 109.47355 * 305.00134 * 13 10 9
43 43 H 1.09000 * 109.47247 * 299.99930 * 14 13 10
44 44 H 1.09000 * 109.47549 * 60.00205 * 14 13 10
45 45 H 1.00899 * 111.00004 * 56.05032 * 15 14 13
46 46 H 1.09005 * 109.47201 * 299.99908 * 16 15 14
47 47 H 1.09004 * 109.47444 * 60.00339 * 16 15 14
48 48 H 0.97004 * 120.00184 * 0.02562 * 19 17 16
49 49 H 0.97003 * 120.00361 * 179.97438 * 23 22 20
50 50 H 1.07997 * 120.00460 * 180.02562 * 28 5 4
51 51 H 1.08001 * 120.00310 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1971 -0.0050
5 6 4.2717 -0.0001 0.0009
6 6 5.7787 -0.0002 0.0018
7 6 6.2801 0.0062 1.4230
8 8 5.4914 0.0100 2.3443
9 7 7.6050 0.0077 1.6700
10 6 8.0924 0.0134 3.0516
11 1 7.4193 0.6050 3.6720
12 6 8.1442 -1.4215 3.5800
13 6 9.4948 0.6238 3.0951
14 6 9.4230 2.0961 2.6851
15 7 10.7694 2.6823 2.7275
16 6 10.7392 4.0988 2.3395
17 6 12.1349 4.6644 2.3942
18 8 13.0636 3.9570 2.7235
19 7 12.3515 5.9561 2.0762
20 6 13.6213 6.4708 2.1265
21 1 14.4480 5.8412 2.4205
22 6 13.8445 7.8027 1.7991
23 7 12.8386 8.5690 1.4419
24 14 15.5746 8.5039 1.8669
25 1 16.4500 7.7529 0.9315
26 1 15.5442 9.9356 1.4741
27 1 16.1050 8.3801 3.2484
28 6 3.5805 -1.1972 0.0063
29 6 2.1981 -1.1972 0.0059
30 1 -0.3634 0.0050 1.0277
31 1 -0.3634 0.8875 -0.5181
32 1 -0.3634 -0.8924 -0.5095
33 1 1.6582 2.1325 -0.0004
34 1 4.1206 2.1323 -0.0089
35 1 6.1423 -0.8924 -0.5078
36 1 6.1424 0.8874 -0.5158
37 1 8.2358 0.0051 0.9332
38 1 8.8174 -2.0131 2.9597
39 1 8.5065 -1.4172 4.6081
40 1 7.1452 -1.8564 3.5490
41 1 9.8931 0.5473 4.1068
42 1 10.1466 0.0862 2.4065
43 1 9.0247 2.1725 1.6734
44 1 8.7713 2.6337 3.3737
45 1 11.4090 2.1615 2.1464
46 1 10.3503 4.1895 1.3253
47 1 10.0963 4.6500 3.0259
48 1 11.6090 6.5218 1.8125
49 1 12.9943 9.4989 1.2137
50 1 4.1204 -2.1325 0.0113
51 1 1.6581 -2.1325 0.0101
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001272897763.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:04
Heat of formation + Delta-G solvation = -68.165324 kcal
Electronic energy + Delta-G solvation = -28773.362124 eV
Core-core repulsion = 24671.559473 eV
Total energy + Delta-G solvation = -4101.802650 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.42462 -39.29617 -38.31733 -36.94749 -34.99945 -34.08458 -33.82984 -31.98626
-31.22470 -31.17579 -29.85015 -29.15452 -26.26828 -25.75895 -24.12138 -22.99676
-22.46537 -21.71486 -20.93631 -20.52814 -19.23604 -17.89919 -17.36814 -16.82269
-16.23204 -16.14948 -15.96426 -15.51271 -15.30287 -14.92852 -14.69175 -14.44948
-14.19779 -14.01463 -13.83884 -13.79871 -13.67523 -13.60241 -13.13343 -13.05993
-12.95758 -12.60412 -12.27095 -12.25099 -12.13272 -12.11299 -11.69138 -11.52497
-11.43130 -11.31011 -11.21659 -11.14302 -11.03615 -10.94881 -10.44795 -10.21951
-10.07052 -9.50700 -9.31874 -9.14757 -8.76038 -8.47103 -8.07197 -7.96648
-6.42249 -3.83268 1.03632 1.18049 2.43415 2.92665 3.19679 3.25439
3.29808 3.54833 3.89916 4.03635 4.25148 4.31405 4.47903 4.61896
4.66914 4.74497 4.76164 4.80933 4.86426 4.98181 5.09511 5.13875
5.17604 5.21925 5.23227 5.26092 5.27137 5.36207 5.44610 5.47882
5.50923 5.53379 5.73709 5.77155 5.81307 5.83088 5.90858 5.94630
5.99845 6.06835 6.13955 6.26194 6.31762 6.32521 6.33831 6.75383
7.19538 7.26373 7.54344 7.64772 8.01900 8.05440 8.60549 9.17042
9.53529 10.05000 10.75375
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014364 B = 0.001578 C = 0.001449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1948.906063 B =17743.360562 C =19321.553597
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.089 4.089
3 C -0.119 4.119
4 C -0.100 4.100
5 C -0.071 4.071
6 C -0.104 4.104
7 C 0.515 3.485
8 O -0.531 6.531
9 N -0.726 5.726
10 C 0.143 3.857
11 H 0.089 0.911
12 C -0.161 4.161
13 C -0.125 4.125
14 C 0.060 3.940
15 N -0.669 5.669
16 C 0.051 3.949
17 C 0.440 3.560
18 O -0.584 6.584
19 N -0.563 5.563
20 C -0.301 4.301
21 H 0.103 0.897
22 C 0.023 3.977
23 N -0.902 5.902
24 Si 0.931 3.069
25 H -0.274 1.274
26 H -0.284 1.284
27 H -0.273 1.273
28 C -0.102 4.102
29 C -0.121 4.121
30 H 0.070 0.930
31 H 0.065 0.935
32 H 0.065 0.935
33 H 0.121 0.879
34 H 0.121 0.879
35 H 0.102 0.898
36 H 0.103 0.897
37 H 0.400 0.600
38 H 0.056 0.944
39 H 0.067 0.933
40 H 0.058 0.942
41 H 0.090 0.910
42 H 0.068 0.932
43 H 0.025 0.975
44 H 0.070 0.930
45 H 0.348 0.652
46 H 0.042 0.958
47 H 0.085 0.915
48 H 0.392 0.608
49 H 0.272 0.728
50 H 0.119 0.881
51 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.157 -19.467 -5.624 30.025
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.089 4.089
3 C -0.137 4.137
4 C -0.118 4.118
5 C -0.071 4.071
6 C -0.144 4.144
7 C 0.301 3.699
8 O -0.406 6.406
9 N -0.379 5.379
10 C 0.038 3.962
11 H 0.107 0.893
12 C -0.220 4.220
13 C -0.163 4.163
14 C -0.070 4.070
15 N -0.302 5.302
16 C -0.081 4.081
17 C 0.226 3.774
18 O -0.468 6.468
19 N -0.200 5.200
20 C -0.430 4.430
21 H 0.120 0.880
22 C -0.179 4.179
23 N -0.543 5.543
24 Si 0.758 3.242
25 H -0.199 1.199
26 H -0.210 1.210
27 H -0.199 1.199
28 C -0.120 4.120
29 C -0.139 4.139
30 H 0.088 0.912
31 H 0.084 0.916
32 H 0.084 0.916
33 H 0.139 0.861
34 H 0.139 0.861
35 H 0.120 0.880
36 H 0.121 0.879
37 H 0.234 0.766
38 H 0.075 0.925
39 H 0.086 0.914
40 H 0.077 0.923
41 H 0.109 0.891
42 H 0.087 0.913
43 H 0.043 0.957
44 H 0.089 0.911
45 H 0.167 0.833
46 H 0.060 0.940
47 H 0.103 0.897
48 H 0.225 0.775
49 H 0.082 0.918
50 H 0.137 0.863
51 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -22.122 -19.581 -4.102 29.827
hybrid contribution 0.610 0.794 -1.452 1.764
sum -21.512 -18.787 -5.553 29.096
Atomic orbital electron populations
1.20794 0.91307 1.02653 1.02358 1.19919 0.96032 0.93268 0.99638
1.20989 0.94082 0.97559 1.01093 1.20984 0.94284 0.97413 0.99131
1.19229 0.93492 0.93618 1.00770 1.20691 0.93473 1.05324 0.94916
1.20524 0.82260 0.75951 0.91212 1.90733 1.55141 1.48515 1.46240
1.46171 1.06918 1.75805 1.08999 1.20979 0.95590 0.96907 0.82701
0.89262 1.22150 1.02231 0.96136 1.01452 1.21881 0.95060 0.95252
1.04104 1.21960 0.91269 0.94440 0.99283 1.60055 1.07718 1.02039
1.60368 1.21661 0.97347 0.89985 0.99144 1.19816 0.89727 0.83386
0.84517 1.90520 1.44348 1.59315 1.52632 1.41862 1.10084 1.08720
1.59321 1.19663 0.85854 0.94407 1.43124 0.87962 1.25264 0.99505
0.96083 0.97046 1.69604 1.31135 1.07672 1.45901 0.85910 0.81770
0.77550 0.78937 1.19926 1.20974 1.19862 1.20930 0.94236 0.97266
0.99530 1.20962 0.94056 0.97489 1.01392 0.91171 0.91572 0.91638
0.86086 0.86145 0.88012 0.87871 0.76626 0.92469 0.91400 0.92259
0.89139 0.91338 0.95650 0.91133 0.83291 0.94004 0.89658 0.77461
0.91812 0.86346 0.86203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16
2 C -0.09 -0.75 5.88 -104.63 -0.62 -1.37 16
3 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16
4 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16
5 C -0.07 -0.65 4.37 -104.62 -0.46 -1.11 16
6 C -0.10 -0.74 5.83 -29.03 -0.17 -0.91 16
7 C 0.51 5.03 7.79 -10.98 -0.09 4.94 16
8 O -0.53 -7.43 15.70 5.56 0.09 -7.34 16
9 N -0.73 -5.77 4.53 -53.80 -0.24 -6.01 16
10 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16
11 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16
12 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16
13 C -0.12 -1.17 5.01 -26.73 -0.13 -1.30 16
14 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16
15 N -0.67 -10.51 6.13 -115.05 -0.70 -11.21 16
16 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16
17 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16
18 O -0.58 -15.85 15.78 5.54 0.09 -15.77 16
19 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16
20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16
21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
23 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16
24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16
25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
28 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16
29 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16
30 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16
31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16
32 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16
33 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16
34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
35 H 0.10 0.49 8.08 -51.94 -0.42 0.07 16
36 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16
37 H 0.40 2.27 8.60 -40.82 -0.35 1.92 16
38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16
44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
45 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16
46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16
48 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16
49 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
50 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16
51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
LS Contribution 429.43 15.07 6.47 6.47
Total: -1.00 -34.49 429.43 -9.99 -44.48
By element:
Atomic # 1 Polarization: 21.63 SS G_CDS: -8.49 Total: 13.15 kcal
Atomic # 6 Polarization: 1.24 SS G_CDS: -2.84 Total: -1.60 kcal
Atomic # 7 Polarization: -55.11 SS G_CDS: -0.28 Total: -55.39 kcal
Atomic # 8 Polarization: -23.28 SS G_CDS: 0.17 Total: -23.11 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 6.47 Total: 6.47 kcal
Total: -34.49 -9.99 -44.48 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272897763.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.686 kcal
(2) G-P(sol) polarization free energy of solvation -34.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds