Wall clock time and date at job start Wed Apr 1 2020 04:19:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38228 * 120.00201 * 2 1
4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1
5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2
6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3
7 7 C 1.50706 * 109.46982 * 90.00130 * 6 5 4
8 8 O 1.21279 * 119.99882 * 0.02562 * 7 6 5
9 9 N 1.34774 * 120.00014 * 180.02562 * 7 6 5
10 10 C 1.46499 * 119.99738 * 180.02562 * 9 7 6
11 11 H 1.08999 * 109.47660 * 324.99741 * 10 9 7
12 12 C 1.53000 * 109.47171 * 85.00353 * 10 9 7
13 13 C 1.53004 * 109.47009 * 204.99950 * 10 9 7
14 14 C 1.53000 * 109.46831 * 65.00091 * 13 10 9
15 15 N 1.46905 * 109.46763 * 179.97438 * 14 13 10
16 16 C 1.46901 * 110.99723 * 180.02562 * 15 14 13
17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14
18 18 O 1.21298 * 120.00334 * 0.02562 * 17 16 15
19 19 N 1.34776 * 120.00068 * 179.97438 * 17 16 15
20 20 C 1.37103 * 120.00126 * 179.97438 * 19 17 16
21 21 H 1.07995 * 120.00032 * 0.02562 * 20 19 17
22 22 C 1.38952 * 120.00139 * 180.02562 * 20 19 17
23 23 N 1.31411 * 119.99927 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00294 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.46962 * 59.99745 * 24 22 20
26 26 H 1.48494 * 109.47320 * 179.97438 * 24 22 20
27 27 H 1.48504 * 109.46856 * 300.00446 * 24 22 20
28 28 C 1.38234 * 120.00240 * 0.26327 * 5 4 3
29 29 C 1.38234 * 119.99739 * 179.71804 * 2 1 3
30 30 H 1.09008 * 109.47424 * 270.28049 * 1 2 3
31 31 H 1.09002 * 109.47258 * 30.27549 * 1 2 3
32 32 H 1.08998 * 109.47359 * 150.27651 * 1 2 3
33 33 H 1.08004 * 120.00256 * 359.97438 * 3 2 1
34 34 H 1.08002 * 120.00519 * 179.76445 * 4 3 2
35 35 H 1.08988 * 109.47584 * 210.00457 * 6 5 4
36 36 H 1.09000 * 109.47013 * 330.00974 * 6 5 4
37 37 H 0.96998 * 119.99975 * 0.02562 * 9 7 6
38 38 H 1.08994 * 109.47624 * 59.99521 * 12 10 9
39 39 H 1.08999 * 109.47133 * 180.02562 * 12 10 9
40 40 H 1.09006 * 109.46954 * 299.99750 * 12 10 9
41 41 H 1.09000 * 109.47148 * 185.00082 * 13 10 9
42 42 H 1.08998 * 109.47355 * 305.00134 * 13 10 9
43 43 H 1.09000 * 109.47247 * 299.99930 * 14 13 10
44 44 H 1.09000 * 109.47549 * 60.00205 * 14 13 10
45 45 H 1.00899 * 111.00004 * 56.05032 * 15 14 13
46 46 H 1.09005 * 109.47201 * 299.99908 * 16 15 14
47 47 H 1.09004 * 109.47444 * 60.00339 * 16 15 14
48 48 H 0.97004 * 120.00184 * 0.02562 * 19 17 16
49 49 H 0.97003 * 120.00361 * 179.97438 * 23 22 20
50 50 H 1.07997 * 120.00460 * 180.02562 * 28 5 4
51 51 H 1.08001 * 120.00310 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1971 -0.0050
5 6 4.2717 -0.0001 0.0009
6 6 5.7787 -0.0002 0.0018
7 6 6.2801 0.0062 1.4230
8 8 5.4914 0.0100 2.3443
9 7 7.6050 0.0077 1.6700
10 6 8.0924 0.0134 3.0516
11 1 7.4193 0.6050 3.6720
12 6 8.1442 -1.4215 3.5800
13 6 9.4948 0.6238 3.0951
14 6 9.4230 2.0961 2.6851
15 7 10.7694 2.6823 2.7275
16 6 10.7392 4.0988 2.3395
17 6 12.1349 4.6644 2.3942
18 8 13.0636 3.9570 2.7235
19 7 12.3515 5.9561 2.0762
20 6 13.6213 6.4708 2.1265
21 1 14.4480 5.8412 2.4205
22 6 13.8445 7.8027 1.7991
23 7 12.8386 8.5690 1.4419
24 14 15.5746 8.5039 1.8669
25 1 16.4500 7.7529 0.9315
26 1 15.5442 9.9356 1.4741
27 1 16.1050 8.3801 3.2484
28 6 3.5805 -1.1972 0.0063
29 6 2.1981 -1.1972 0.0059
30 1 -0.3634 0.0050 1.0277
31 1 -0.3634 0.8875 -0.5181
32 1 -0.3634 -0.8924 -0.5095
33 1 1.6582 2.1325 -0.0004
34 1 4.1206 2.1323 -0.0089
35 1 6.1423 -0.8924 -0.5078
36 1 6.1424 0.8874 -0.5158
37 1 8.2358 0.0051 0.9332
38 1 8.8174 -2.0131 2.9597
39 1 8.5065 -1.4172 4.6081
40 1 7.1452 -1.8564 3.5490
41 1 9.8931 0.5473 4.1068
42 1 10.1466 0.0862 2.4065
43 1 9.0247 2.1725 1.6734
44 1 8.7713 2.6337 3.3737
45 1 11.4090 2.1615 2.1464
46 1 10.3503 4.1895 1.3253
47 1 10.0963 4.6500 3.0259
48 1 11.6090 6.5218 1.8125
49 1 12.9943 9.4989 1.2137
50 1 4.1204 -2.1325 0.0113
51 1 1.6581 -2.1325 0.0101
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001272897763.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:03
Heat of formation + Delta-G solvation = -91.689819 kcal
Electronic energy + Delta-G solvation = -28774.382222 eV
Core-core repulsion = 24671.559473 eV
Total energy + Delta-G solvation = -4102.822749 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.14111 -40.17821 -39.91830 -37.92763 -36.27663 -35.67992 -34.70172 -33.28898
-32.76012 -31.79523 -30.63491 -29.99237 -27.78747 -26.39265 -25.74440 -23.62169
-23.43347 -22.49429 -21.68637 -21.21986 -21.03164 -19.90620 -18.09830 -17.84244
-17.55207 -17.04053 -16.77543 -16.56445 -16.44689 -15.98126 -15.94376 -15.69663
-15.29819 -15.19679 -15.05295 -14.77326 -14.46778 -14.29825 -14.25877 -13.80385
-13.70311 -13.64098 -13.48060 -13.29762 -13.15819 -12.92526 -12.80254 -12.72211
-12.66276 -12.43631 -12.25345 -12.13642 -12.04773 -11.98107 -11.80718 -11.77561
-11.50012 -10.87831 -10.36466 -10.05785 -10.02018 -9.79439 -9.37881 -9.31523
-8.46608 -5.95727 0.40516 0.53327 1.40282 1.42351 1.53332 1.70656
2.04738 2.25886 2.29332 2.89154 2.91362 3.20582 3.49767 3.71856
3.88619 3.91498 4.01163 4.08654 4.13512 4.15660 4.23661 4.30198
4.31348 4.44515 4.47161 4.53631 4.58286 4.62475 4.64271 4.65696
4.68901 4.82037 4.82875 4.86886 4.95976 4.98920 5.11962 5.20169
5.20980 5.30134 5.32323 5.40664 5.51325 5.60285 5.68427 5.72324
5.88534 6.09816 6.15242 6.44129 6.59632 6.62431 7.12110 7.33372
7.55713 8.10747 8.70464
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014364 B = 0.001578 C = 0.001449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1948.906063 B =17743.360562 C =19321.553597
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.101 4.101
3 C -0.135 4.135
4 C -0.119 4.119
5 C -0.085 4.085
6 C -0.098 4.098
7 C 0.514 3.486
8 O -0.579 6.579
9 N -0.715 5.715
10 C 0.149 3.851
11 H 0.066 0.934
12 C -0.156 4.156
13 C -0.113 4.113
14 C 0.063 3.937
15 N -0.683 5.683
16 C 0.065 3.935
17 C 0.437 3.563
18 O -0.623 6.623
19 N -0.573 5.573
20 C -0.337 4.337
21 H 0.080 0.920
22 C -0.012 4.012
23 N -0.920 5.920
24 Si 0.994 3.006
25 H -0.270 1.270
26 H -0.271 1.271
27 H -0.273 1.273
28 C -0.115 4.115
29 C -0.133 4.133
30 H 0.072 0.928
31 H 0.073 0.927
32 H 0.076 0.924
33 H 0.132 0.868
34 H 0.125 0.875
35 H 0.128 0.872
36 H 0.122 0.878
37 H 0.414 0.586
38 H 0.071 0.929
39 H 0.072 0.928
40 H 0.043 0.957
41 H 0.083 0.917
42 H 0.084 0.916
43 H 0.042 0.958
44 H 0.063 0.937
45 H 0.347 0.653
46 H 0.067 0.933
47 H 0.098 0.902
48 H 0.396 0.604
49 H 0.278 0.722
50 H 0.131 0.869
51 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.321 -19.987 -6.681 30.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.101 4.101
3 C -0.153 4.153
4 C -0.137 4.137
5 C -0.086 4.086
6 C -0.137 4.137
7 C 0.301 3.699
8 O -0.458 6.458
9 N -0.368 5.368
10 C 0.044 3.956
11 H 0.085 0.915
12 C -0.214 4.214
13 C -0.151 4.151
14 C -0.065 4.065
15 N -0.316 5.316
16 C -0.067 4.067
17 C 0.224 3.776
18 O -0.509 6.509
19 N -0.210 5.210
20 C -0.466 4.466
21 H 0.098 0.902
22 C -0.212 4.212
23 N -0.561 5.561
24 Si 0.817 3.183
25 H -0.196 1.196
26 H -0.195 1.195
27 H -0.198 1.198
28 C -0.133 4.133
29 C -0.151 4.151
30 H 0.091 0.909
31 H 0.092 0.908
32 H 0.095 0.905
33 H 0.150 0.850
34 H 0.143 0.857
35 H 0.146 0.854
36 H 0.140 0.860
37 H 0.251 0.749
38 H 0.090 0.910
39 H 0.090 0.910
40 H 0.062 0.938
41 H 0.102 0.898
42 H 0.102 0.898
43 H 0.061 0.939
44 H 0.082 0.918
45 H 0.166 0.834
46 H 0.085 0.915
47 H 0.116 0.884
48 H 0.230 0.770
49 H 0.087 0.913
50 H 0.149 0.851
51 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -22.293 -20.103 -5.186 30.463
hybrid contribution 0.617 0.911 -1.102 1.557
sum -21.676 -19.193 -6.288 29.626
Atomic orbital electron populations
1.20825 0.89691 1.03639 1.02769 1.20264 0.97423 0.93173 0.99212
1.21259 0.94308 0.98405 1.01315 1.21219 0.94797 0.97954 0.99724
1.19509 0.94743 0.93608 1.00713 1.20732 0.92216 1.07491 0.93309
1.20983 0.82234 0.74844 0.91810 1.90717 1.56362 1.50859 1.47849
1.46072 1.06799 1.74843 1.09058 1.20815 0.94750 0.96994 0.83058
0.91531 1.22087 1.01644 0.95568 1.02089 1.21761 0.95359 0.93884
1.04109 1.22001 0.89009 0.95372 1.00151 1.60038 1.09861 1.01097
1.60620 1.21511 0.93092 0.91065 1.01043 1.20879 0.91830 0.82492
0.82352 1.90487 1.46481 1.60087 1.53864 1.41939 1.09478 1.09592
1.60001 1.19655 0.86568 0.95143 1.45239 0.90226 1.26048 1.03358
0.95797 0.96008 1.69667 1.32717 1.08045 1.45674 0.84980 0.77156
0.77310 0.78840 1.19554 1.19519 1.19786 1.21218 0.94704 0.97863
0.99518 1.21278 0.94331 0.98317 1.01177 0.90938 0.90787 0.90503
0.85019 0.85689 0.85373 0.85995 0.74929 0.91034 0.90954 0.93792
0.89803 0.89758 0.93941 0.91829 0.83415 0.91479 0.88417 0.77006
0.91285 0.85062 0.84582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.24 10.01 71.24 0.71 -0.53 16
2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16
3 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16
4 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16
5 C -0.09 -1.50 4.37 -19.87 -0.09 -1.59 16
6 C -0.10 -1.21 5.83 29.10 0.17 -1.04 16
7 C 0.51 9.42 7.79 87.66 0.68 10.11 16
8 O -0.58 -16.24 15.70 -3.03 -0.05 -16.29 16
9 N -0.71 -9.97 4.53 -442.53 -2.00 -11.98 16
10 C 0.15 2.50 2.57 44.99 0.12 2.62 16
11 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16
12 C -0.16 -2.40 9.48 71.98 0.68 -1.72 16
13 C -0.11 -1.90 5.01 30.60 0.15 -1.75 16
14 C 0.06 1.35 5.57 86.30 0.48 1.83 16
15 N -0.68 -20.39 6.13 -517.91 -3.17 -23.57 16
16 C 0.07 2.20 6.17 85.56 0.53 2.73 16
17 C 0.44 20.66 7.82 87.66 0.69 21.34 16
18 O -0.62 -34.22 15.78 -3.09 -0.05 -34.27 16
19 N -0.57 -29.35 5.29 -306.98 -1.62 -30.97 16
20 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16
21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16
22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16
23 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16
24 Si 0.99 42.69 29.55 68.60 2.03 44.72 16
25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16
27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16
28 C -0.12 -1.96 9.70 22.27 0.22 -1.75 16
29 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16
30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
31 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16
32 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16
33 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16
34 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16
35 H 0.13 0.88 8.08 -2.39 -0.02 0.86 16
36 H 0.12 1.04 8.09 -2.39 -0.02 1.02 16
37 H 0.41 3.48 8.60 -92.71 -0.80 2.68 16
38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
40 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16
41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
43 H 0.04 0.78 7.75 -2.39 -0.02 0.76 16
44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
45 H 0.35 10.49 8.43 -89.69 -0.76 9.73 16
46 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16
47 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16
48 H 0.40 19.28 7.90 -92.70 -0.73 18.54 16
49 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16
50 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16
51 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16
Total: -1.00 -75.64 429.43 0.23 -75.41
By element:
Atomic # 1 Polarization: 43.69 SS G_CDS: -1.34 Total: 42.35 kcal
Atomic # 6 Polarization: -2.30 SS G_CDS: 6.15 Total: 3.85 kcal
Atomic # 7 Polarization: -109.25 SS G_CDS: -6.52 Total: -115.77 kcal
Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal
Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal
Total: -75.64 0.23 -75.41 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272897763.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.278 kcal
(2) G-P(sol) polarization free energy of solvation -75.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.412 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.690 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds