Wall clock time and date at job start Wed Apr 1 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 119.99519 * 2 1 4 4 C 1.38234 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00334 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99933 * 359.97438 * 4 3 2 7 7 C 1.38238 * 119.99543 * 0.02562 * 6 4 3 8 8 C 1.50702 * 119.99556 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47420 * 89.99969 * 8 7 6 10 10 O 1.21283 * 119.99867 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00220 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00107 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46991 * 35.00793 * 12 11 9 14 14 C 1.52996 * 109.47499 * 275.00916 * 12 11 9 15 15 C 1.53004 * 109.47037 * 155.00248 * 12 11 9 16 16 N 1.46895 * 109.47035 * 305.00472 * 15 12 11 17 17 C 1.46906 * 110.99789 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47109 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99978 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99848 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00405 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99358 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00464 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99431 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47204 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46979 * 120.00140 * 25 23 21 28 28 H 1.48498 * 109.47371 * 240.00040 * 25 23 21 29 29 C 1.38229 * 120.00374 * 0.25352 * 7 6 4 30 30 H 1.08997 * 109.47255 * 90.00215 * 1 2 3 31 31 H 1.09000 * 109.47152 * 209.99591 * 1 2 3 32 32 H 1.08994 * 109.47446 * 329.99923 * 1 2 3 33 33 H 1.08000 * 120.00528 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47225 * 270.02047 * 5 4 3 35 35 H 1.08998 * 109.46892 * 30.02323 * 5 4 3 36 36 H 1.09005 * 109.46873 * 150.02295 * 5 4 3 37 37 H 1.08001 * 120.00526 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47482 * 329.99490 * 8 7 6 39 39 H 1.09004 * 109.46709 * 210.00115 * 8 7 6 40 40 H 0.97002 * 120.00386 * 0.02562 * 11 9 8 41 41 H 1.08997 * 109.47549 * 59.99639 * 14 12 11 42 42 H 1.08994 * 109.47227 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.46643 * 299.99483 * 14 12 11 44 44 H 1.08996 * 109.46863 * 185.00314 * 15 12 11 45 45 H 1.09002 * 109.46661 * 65.00491 * 15 12 11 46 46 H 1.00902 * 111.00273 * 303.95364 * 16 15 12 47 47 H 1.08992 * 109.47459 * 299.99826 * 17 16 15 48 48 H 1.09004 * 109.47040 * 59.99976 * 17 16 15 49 49 H 0.97002 * 119.99767 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99770 * 179.97438 * 24 23 21 51 51 H 1.07997 * 120.00490 * 179.72719 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3338 2.5024 -0.0011 6 6 4.2717 0.0002 -0.0005 7 6 3.5805 -1.1970 -0.0005 8 6 4.3341 -2.5021 -0.0011 9 6 4.5859 -2.9375 1.4195 10 8 4.1926 -2.2549 2.3416 11 7 5.2481 -4.0852 1.6652 12 6 5.4934 -4.5082 3.0462 13 1 4.6473 -4.2202 3.6701 14 6 6.7642 -3.8346 3.5679 15 6 5.6662 -6.0278 3.0912 16 7 4.4959 -6.6719 2.4803 17 6 4.6273 -8.1349 2.5052 18 6 3.4107 -8.7594 1.8721 19 8 2.5217 -8.0551 1.4420 20 7 3.3103 -10.1005 1.7838 21 6 2.2037 -10.6687 1.2074 22 1 1.4122 -10.0416 0.8245 23 6 2.1006 -12.0513 1.1160 24 7 3.0640 -12.8144 1.5815 25 14 0.5925 -12.8255 0.3312 26 1 -0.3394 -11.7569 -0.1104 27 1 1.0062 -13.6368 -0.8418 28 1 -0.0879 -13.6982 1.3214 29 6 2.1982 -1.1971 -0.0058 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6581 2.1325 0.0004 34 1 4.5148 2.8171 -1.0289 35 1 3.7451 3.2620 0.5131 36 1 5.2867 2.3721 0.5120 37 1 5.3517 0.0002 -0.0014 38 1 5.2863 -2.3716 -0.5154 39 1 3.7448 -3.2616 -0.5149 40 1 5.5631 -4.6310 0.9277 41 1 6.6411 -2.7521 3.5359 42 1 6.9469 -4.1497 4.5952 43 1 7.6104 -4.1227 2.9441 44 1 5.7600 -6.3522 4.1275 45 1 6.5640 -6.3077 2.5401 46 1 3.6435 -6.3774 2.9330 47 1 5.5178 -8.4292 1.9498 48 1 4.7141 -8.4743 3.5374 49 1 4.0215 -10.6637 2.1274 50 1 2.9917 -13.7795 1.5179 51 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274906827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:01 Heat of formation + Delta-G solvation = -69.382848 kcal Electronic energy + Delta-G solvation = -29413.616827 eV Core-core repulsion = 25311.761381 eV Total energy + Delta-G solvation = -4101.855446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.21827 -39.21215 -38.30470 -36.64568 -34.28512 -33.64806 -33.63326 -33.59475 -31.30044 -31.06681 -28.37546 -27.60874 -27.08886 -26.80222 -25.03714 -23.32022 -22.15831 -20.85254 -20.80877 -20.06615 -19.25169 -17.91865 -17.12086 -16.72261 -16.36675 -16.04878 -15.80411 -15.17404 -14.94688 -14.63309 -14.47319 -14.35004 -14.21163 -13.92088 -13.71137 -13.52997 -13.38496 -13.27556 -13.07227 -13.02151 -12.71393 -12.67869 -12.58397 -12.29056 -12.01082 -11.84757 -11.72802 -11.58930 -11.55198 -11.49364 -11.12193 -11.07490 -11.07461 -10.92638 -10.36160 -10.24735 -9.81581 -9.54288 -8.99629 -8.67668 -8.60378 -8.50209 -8.12458 -7.98539 -6.44175 -3.84967 1.26260 1.31552 2.73458 3.14621 3.19554 3.25446 3.32672 3.71037 3.88106 4.04645 4.27830 4.50744 4.62734 4.66814 4.76451 4.94781 5.02792 5.07481 5.09102 5.13847 5.16388 5.21520 5.22847 5.29305 5.36484 5.42778 5.44568 5.45338 5.47899 5.49363 5.56870 5.60109 5.65456 5.74148 5.75793 5.91045 5.93531 6.04055 6.06491 6.09720 6.23014 6.44429 6.46703 6.55269 6.56423 6.95627 7.12816 7.53208 7.57094 7.61823 8.04086 8.33146 8.58650 9.15688 9.51807 10.03084 10.73571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.001988 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.890962 B =14082.155056 C =16007.872391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.053 4.053 8 C -0.105 4.105 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.709 5.709 12 C 0.146 3.854 13 H 0.085 0.915 14 C -0.160 4.160 15 C 0.048 3.952 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.109 4.109 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.405 0.595 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.351 0.649 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 23.884 -1.328 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.086 4.086 5 C -0.169 4.169 6 C -0.130 4.130 7 C -0.054 4.054 8 C -0.145 4.145 9 C 0.304 3.696 10 O -0.417 6.417 11 N -0.360 5.360 12 C 0.040 3.960 13 H 0.103 0.897 14 C -0.219 4.219 15 C -0.082 4.082 16 N -0.299 5.299 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.127 4.127 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.240 0.760 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.170 0.830 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.870 24.683 -1.581 25.670 hybrid contribution -0.174 -1.530 0.488 1.615 sum 6.696 23.153 -1.093 24.127 Atomic orbital electron populations 1.20789 0.91234 1.02858 1.02226 1.19848 0.96001 0.93010 0.99345 1.20844 0.93481 0.97375 1.02508 1.19804 0.93810 0.95092 0.99888 1.20762 0.99873 0.94160 1.02060 1.20780 0.99281 0.91460 1.01504 1.19233 0.93505 0.93497 0.99129 1.20689 1.02196 0.96379 0.95216 1.20418 0.77281 0.80840 0.91041 1.90707 1.50818 1.54016 1.46179 1.45832 1.58078 1.23491 1.08646 1.20910 0.98363 0.92960 0.83732 0.89705 1.22131 0.97200 1.01460 1.01137 1.22312 0.95180 0.92666 0.98055 1.60059 1.04439 1.05660 1.59756 1.21680 0.98993 0.88207 0.99344 1.19805 0.88805 0.83103 0.85732 1.90531 1.41922 1.61437 1.52772 1.41873 1.20484 1.04640 1.53058 1.19752 0.98221 0.90194 1.34666 0.87873 1.25267 0.98760 0.96192 0.97763 1.69618 1.32775 1.05415 1.46484 0.85803 0.80962 0.79019 0.78580 1.19209 1.20734 1.20764 1.20902 0.93449 0.97776 1.00545 0.91227 0.91347 0.91704 0.86438 0.91357 0.91704 0.91662 0.86525 0.88180 0.87501 0.75984 0.91952 0.91706 0.92359 0.93975 0.90475 0.82977 0.89595 0.93867 0.77480 0.91920 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.08 -0.92 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.30 9.36 -39.59 -0.37 -1.67 16 4 C -0.09 -0.89 5.88 -104.62 -0.62 -1.51 16 5 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 6 C -0.11 -1.24 9.36 -39.58 -0.37 -1.61 16 7 C -0.05 -0.63 4.37 -104.62 -0.46 -1.09 16 8 C -0.10 -1.08 5.83 -29.03 -0.17 -1.25 16 9 C 0.52 6.64 7.79 -10.99 -0.09 6.55 16 10 O -0.54 -8.95 15.70 5.55 0.09 -8.87 16 11 N -0.71 -7.93 4.80 -53.80 -0.26 -8.18 16 12 C 0.15 1.62 2.81 -67.93 -0.19 1.43 16 13 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 14 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 15 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 16 N -0.67 -10.03 5.85 -115.06 -0.67 -10.70 16 17 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 18 C 0.44 10.15 7.82 -10.98 -0.09 10.07 16 19 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 20 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C -0.11 -1.33 9.36 -39.59 -0.37 -1.70 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.41 4.00 8.60 -40.82 -0.35 3.65 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 429.83 15.07 6.48 6.48 Total: -1.00 -33.76 429.83 -9.69 -43.45 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -8.50 Total: 16.32 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.55 Total: -1.19 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.26 Total: -56.61 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.17 Total: -24.35 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -33.76 -9.69 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274906827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.936 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds