Wall clock time and date at job start Wed Apr 1 2020 05:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38356 * 119.93046 * 2 1 4 4 C 1.38362 * 120.29585 * 179.70084 * 3 2 1 5 5 C 1.50693 * 119.93002 * 180.28115 * 4 3 2 6 6 C 1.37955 * 120.14149 * 0.56434 * 4 3 2 7 7 C 1.39575 * 119.85263 * 359.43978 * 6 4 3 8 8 C 1.47848 * 120.14487 * 180.26061 * 7 6 4 9 9 O 1.21550 * 119.99870 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00008 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46808 * 34.99986 * 11 10 8 13 13 C 1.52998 * 109.47082 * 274.99986 * 11 10 8 14 14 C 1.53001 * 109.47126 * 154.99850 * 11 10 8 15 15 N 1.46898 * 109.47303 * 305.00310 * 14 11 10 16 16 C 1.46903 * 110.99785 * 293.95454 * 15 14 11 17 17 C 1.46893 * 111.00355 * 169.99817 * 15 14 11 18 18 C 1.50700 * 109.47342 * 189.99824 * 17 15 14 19 19 O 1.21288 * 120.00021 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99894 * 180.02562 * 18 17 15 21 21 C 1.37096 * 120.00134 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00512 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00442 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99591 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46978 * 90.00083 * 25 23 21 27 27 H 1.48503 * 109.46827 * 209.99809 * 25 23 21 28 28 H 1.48494 * 109.47404 * 329.99942 * 25 23 21 29 29 C 1.37959 * 119.92527 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47113 * 270.01817 * 1 2 3 31 31 H 1.09000 * 109.47457 * 30.01905 * 1 2 3 32 32 H 1.09004 * 109.47543 * 150.02243 * 1 2 3 33 33 H 1.08003 * 119.84799 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47410 * 270.28343 * 5 4 3 35 35 H 1.09000 * 109.47285 * 30.27772 * 5 4 3 36 36 H 1.08998 * 109.47060 * 150.27786 * 5 4 3 37 37 H 1.08002 * 120.07573 * 179.72197 * 6 4 3 38 38 H 0.96996 * 119.99612 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47170 * 300.00238 * 13 11 10 40 40 H 1.08999 * 109.46838 * 60.00008 * 13 11 10 41 41 H 1.09006 * 109.47116 * 180.02562 * 13 11 10 42 42 H 1.09000 * 109.47022 * 65.00045 * 14 11 10 43 43 H 1.08991 * 109.47212 * 185.00104 * 14 11 10 44 44 H 1.08997 * 109.47372 * 59.99560 * 16 15 14 45 45 H 1.08998 * 109.47170 * 179.97438 * 16 15 14 46 46 H 1.09004 * 109.46806 * 299.99783 * 16 15 14 47 47 H 1.09008 * 109.47174 * 310.00139 * 17 15 14 48 48 H 1.09002 * 109.47228 * 69.99568 * 17 15 14 49 49 H 0.97002 * 120.00190 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00033 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.07494 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5809 1.2079 0.0062 5 6 4.3244 2.5186 0.0126 6 6 4.2812 0.0193 0.0008 7 6 3.5910 -1.1938 0.0007 8 6 4.3351 -2.4714 0.0007 9 8 5.5506 -2.4668 0.0011 10 7 3.6656 -3.6412 0.0001 11 6 4.4030 -4.9071 -0.0005 12 1 5.3132 -4.7976 0.5890 13 6 4.7683 -5.2838 -1.4377 14 6 3.5300 -6.0061 0.6087 15 7 3.0805 -5.5906 1.9441 16 6 4.2139 -5.4895 2.8731 17 6 2.0548 -6.5054 2.4626 18 6 1.4446 -5.9206 3.7103 19 8 1.8262 -4.8472 4.1263 20 7 0.4747 -6.5905 4.3638 21 6 -0.0801 -6.0588 5.4992 22 1 0.2598 -5.1030 5.8696 23 6 -1.0803 -6.7492 6.1727 24 7 -1.6125 -6.2393 7.2606 25 14 -1.6686 -8.4022 5.5315 26 1 -0.8554 -9.4864 6.1384 27 1 -3.0965 -8.5932 5.8921 28 1 -1.5217 -8.4409 4.0543 29 6 2.1952 -1.1957 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6537 2.1323 0.0004 34 1 4.5038 2.8396 -1.0135 35 1 3.7294 3.2713 0.5298 36 1 5.2776 2.3931 0.5261 37 1 5.3612 0.0275 0.0011 38 1 2.6957 -3.6448 0.0001 39 1 3.8580 -5.3932 -2.0272 40 1 5.3902 -4.5009 -1.8716 41 1 5.3165 -6.2260 -1.4382 42 1 2.6631 -6.1770 -0.0296 43 1 4.1083 -6.9263 0.6900 44 1 4.9257 -4.7535 2.4992 45 1 3.8532 -5.1799 3.8540 46 1 4.7040 -6.4597 2.9554 47 1 1.2789 -6.6456 1.7099 48 1 2.5109 -7.4671 2.6975 49 1 0.1692 -7.4489 4.0309 50 1 -2.3104 -6.7214 7.7310 51 1 1.6552 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275707736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:27 Heat of formation + Delta-G solvation = -45.026787 kcal Electronic energy + Delta-G solvation = -30615.438943 eV Core-core repulsion = 26514.639655 eV Total energy + Delta-G solvation = -4100.799288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38533 -39.11682 -38.55633 -37.02157 -34.80699 -33.88621 -33.66553 -32.56568 -31.68985 -30.67429 -28.20689 -27.52915 -26.97529 -26.74270 -24.85855 -24.16959 -22.47842 -21.00251 -20.51299 -20.15525 -19.35834 -18.26802 -17.47776 -16.59694 -16.26656 -15.94360 -15.47772 -15.38826 -14.98487 -14.83260 -14.65914 -14.41063 -14.06988 -14.02703 -13.61961 -13.47806 -13.35523 -13.25730 -13.12711 -12.89496 -12.70256 -12.56753 -12.42192 -12.15886 -12.11911 -11.99654 -11.83548 -11.66851 -11.61521 -11.48122 -11.36331 -11.17892 -11.04167 -10.76663 -10.61676 -9.99205 -9.87208 -9.55273 -9.10670 -8.83792 -8.71582 -8.59211 -8.19848 -7.99898 -6.32526 -3.83936 0.80220 1.22844 2.86066 3.00080 3.04603 3.13078 3.17036 3.72296 3.78247 3.86629 4.08423 4.56293 4.60185 4.61511 4.71233 4.77426 4.97696 5.05249 5.12100 5.15158 5.16716 5.21673 5.31803 5.35937 5.38454 5.40578 5.42638 5.52698 5.55707 5.56424 5.61701 5.62888 5.71354 5.84231 5.85182 5.87123 5.90903 5.95199 6.01250 6.04836 6.22313 6.35632 6.41134 6.49985 6.54498 6.79854 7.11744 7.25060 7.56959 7.59050 8.13364 8.27851 8.58896 8.94162 9.41091 9.82383 10.80658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.002758 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.989219 B =10150.275390 C =11923.534134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.098 4.098 4 C -0.095 4.095 5 C -0.113 4.113 6 C -0.069 4.069 7 C -0.123 4.123 8 C 0.563 3.437 9 O -0.548 6.548 10 N -0.700 5.700 11 C 0.147 3.853 12 H 0.089 0.911 13 C -0.161 4.161 14 C 0.042 3.958 15 N -0.515 5.515 16 C 0.020 3.980 17 C 0.042 3.958 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.086 4.086 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.133 0.867 38 H 0.404 0.596 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.015 0.985 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 6.869 -20.222 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.087 4.087 7 C -0.126 4.126 8 C 0.350 3.650 9 O -0.427 6.427 10 N -0.351 5.351 11 C 0.042 3.958 12 H 0.107 0.893 13 C -0.220 4.220 14 C -0.087 4.087 15 N -0.239 5.239 16 C -0.127 4.127 17 C -0.090 4.090 18 C 0.238 3.762 19 O -0.438 6.438 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.104 4.104 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.034 0.966 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.436 8.018 -19.780 22.950 hybrid contribution -0.833 -2.319 -0.183 2.471 sum 7.603 5.700 -19.963 22.109 Atomic orbital electron populations 1.20819 0.90611 1.02791 1.03019 1.19851 0.96441 0.92753 0.99769 1.21097 0.93507 0.97690 0.99375 1.19852 0.93777 0.95306 1.00544 1.20780 1.00140 0.93681 1.02336 1.21092 1.00446 0.90417 0.96789 1.19909 0.93597 0.93593 1.05477 1.18210 0.87107 0.83772 0.75891 1.90732 1.13503 1.87702 1.50769 1.45706 1.10590 1.04769 1.74032 1.20952 0.95762 0.82844 0.96246 0.89289 1.22154 1.01845 1.01934 0.96101 1.22510 0.98968 0.95809 0.91393 1.61559 1.12016 1.48809 1.01509 1.22577 0.92089 0.98957 0.99122 1.21917 0.95528 0.94026 0.97481 1.19630 0.83359 0.87067 0.86139 1.90543 1.62878 1.22036 1.68347 1.42219 1.35149 1.20139 1.25653 1.19417 1.16986 1.06943 0.99890 0.86297 1.25033 0.96808 0.98290 0.96036 1.69617 1.26786 1.38640 1.17133 0.86682 0.79500 0.84298 0.78947 1.19697 1.20193 1.19513 1.21214 0.92882 0.98202 0.98151 0.90555 0.91550 0.91283 0.85786 0.91161 0.91416 0.91303 0.84918 0.75991 0.92340 0.91807 0.91629 0.90264 0.93399 0.91917 0.88547 0.96615 0.89345 0.93338 0.79785 0.91623 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.09 -0.96 5.87 -104.68 -0.61 -1.57 16 3 C -0.10 -1.00 9.35 -39.49 -0.37 -1.37 16 4 C -0.09 -1.01 5.87 -104.68 -0.61 -1.62 16 5 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 6 C -0.07 -0.86 9.24 -39.19 -0.36 -1.22 16 7 C -0.12 -1.64 5.87 -104.97 -0.62 -2.25 16 8 C 0.56 8.17 7.74 -12.33 -0.10 8.08 16 9 O -0.55 -9.42 16.01 5.32 0.09 -9.33 16 10 N -0.70 -8.71 4.75 -54.75 -0.26 -8.97 16 11 C 0.15 1.69 2.35 -67.93 -0.16 1.53 16 12 H 0.09 1.20 6.23 -51.93 -0.32 0.88 16 13 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 14 C 0.04 0.46 4.52 -3.82 -0.02 0.45 16 15 N -0.52 -7.72 4.22 -244.37 -1.03 -8.76 16 16 C 0.02 0.33 8.96 60.07 0.54 0.86 16 17 C 0.04 0.66 5.45 -4.98 -0.03 0.64 16 18 C 0.45 9.93 7.47 -10.99 -0.08 9.85 16 19 O -0.56 -14.47 13.91 5.55 0.08 -14.40 16 20 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 21 C -0.30 -8.45 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 25 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 29 C -0.09 -1.02 9.19 -39.18 -0.36 -1.38 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.13 1.65 7.65 -52.49 -0.40 1.25 16 38 H 0.40 4.61 6.64 -40.82 -0.27 4.34 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 43 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.06 0.99 6.58 -51.93 -0.34 0.65 16 45 H 0.10 1.91 5.83 -51.93 -0.30 1.61 16 46 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 1.19 7.93 -51.92 -0.41 0.77 16 48 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 49 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 50 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.13 1.35 6.41 -52.49 -0.34 1.02 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -34.16 415.60 -8.89 -43.05 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -8.07 Total: 14.32 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.96 Total: 2.07 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.57 Total: -56.33 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.16 Total: -23.73 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.16 -8.89 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275707736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.974 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds