Wall clock time and date at job start Wed Apr 1 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38356 * 119.93046 * 2 1 4 4 C 1.38362 * 120.29585 * 179.70084 * 3 2 1 5 5 C 1.50693 * 119.93002 * 180.28115 * 4 3 2 6 6 C 1.37955 * 120.14149 * 0.56434 * 4 3 2 7 7 C 1.39575 * 119.85263 * 359.43978 * 6 4 3 8 8 C 1.47848 * 120.14487 * 180.26061 * 7 6 4 9 9 O 1.21550 * 119.99870 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00008 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46808 * 34.99986 * 11 10 8 13 13 C 1.52998 * 109.47082 * 274.99986 * 11 10 8 14 14 C 1.53001 * 109.47126 * 154.99850 * 11 10 8 15 15 N 1.46898 * 109.47303 * 305.00310 * 14 11 10 16 16 C 1.46903 * 110.99785 * 293.95454 * 15 14 11 17 17 C 1.46893 * 111.00355 * 169.99817 * 15 14 11 18 18 C 1.50700 * 109.47342 * 189.99824 * 17 15 14 19 19 O 1.21288 * 120.00021 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99894 * 180.02562 * 18 17 15 21 21 C 1.37096 * 120.00134 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00512 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00442 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99591 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46978 * 90.00083 * 25 23 21 27 27 H 1.48503 * 109.46827 * 209.99809 * 25 23 21 28 28 H 1.48494 * 109.47404 * 329.99942 * 25 23 21 29 29 C 1.37959 * 119.92527 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47113 * 270.01817 * 1 2 3 31 31 H 1.09000 * 109.47457 * 30.01905 * 1 2 3 32 32 H 1.09004 * 109.47543 * 150.02243 * 1 2 3 33 33 H 1.08003 * 119.84799 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47410 * 270.28343 * 5 4 3 35 35 H 1.09000 * 109.47285 * 30.27772 * 5 4 3 36 36 H 1.08998 * 109.47060 * 150.27786 * 5 4 3 37 37 H 1.08002 * 120.07573 * 179.72197 * 6 4 3 38 38 H 0.96996 * 119.99612 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47170 * 300.00238 * 13 11 10 40 40 H 1.08999 * 109.46838 * 60.00008 * 13 11 10 41 41 H 1.09006 * 109.47116 * 180.02562 * 13 11 10 42 42 H 1.09000 * 109.47022 * 65.00045 * 14 11 10 43 43 H 1.08991 * 109.47212 * 185.00104 * 14 11 10 44 44 H 1.08997 * 109.47372 * 59.99560 * 16 15 14 45 45 H 1.08998 * 109.47170 * 179.97438 * 16 15 14 46 46 H 1.09004 * 109.46806 * 299.99783 * 16 15 14 47 47 H 1.09008 * 109.47174 * 310.00139 * 17 15 14 48 48 H 1.09002 * 109.47228 * 69.99568 * 17 15 14 49 49 H 0.97002 * 120.00190 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00033 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.07494 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1990 0.0000 4 6 3.5809 1.2079 0.0062 5 6 4.3244 2.5186 0.0126 6 6 4.2812 0.0193 0.0008 7 6 3.5910 -1.1938 0.0007 8 6 4.3351 -2.4714 0.0007 9 8 5.5506 -2.4668 0.0011 10 7 3.6656 -3.6412 0.0001 11 6 4.4030 -4.9071 -0.0005 12 1 5.3132 -4.7976 0.5890 13 6 4.7683 -5.2838 -1.4377 14 6 3.5300 -6.0061 0.6087 15 7 3.0805 -5.5906 1.9441 16 6 4.2139 -5.4895 2.8731 17 6 2.0548 -6.5054 2.4626 18 6 1.4446 -5.9206 3.7103 19 8 1.8262 -4.8472 4.1263 20 7 0.4747 -6.5905 4.3638 21 6 -0.0801 -6.0588 5.4992 22 1 0.2598 -5.1030 5.8696 23 6 -1.0803 -6.7492 6.1727 24 7 -1.6125 -6.2393 7.2606 25 14 -1.6686 -8.4022 5.5315 26 1 -0.8554 -9.4864 6.1384 27 1 -3.0965 -8.5932 5.8921 28 1 -1.5217 -8.4409 4.0543 29 6 2.1952 -1.1957 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6537 2.1323 0.0004 34 1 4.5038 2.8396 -1.0135 35 1 3.7294 3.2713 0.5298 36 1 5.2776 2.3931 0.5261 37 1 5.3612 0.0275 0.0011 38 1 2.6957 -3.6448 0.0001 39 1 3.8580 -5.3932 -2.0272 40 1 5.3902 -4.5009 -1.8716 41 1 5.3165 -6.2260 -1.4382 42 1 2.6631 -6.1770 -0.0296 43 1 4.1083 -6.9263 0.6900 44 1 4.9257 -4.7535 2.4992 45 1 3.8532 -5.1799 3.8540 46 1 4.7040 -6.4597 2.9554 47 1 1.2789 -6.6456 1.7099 48 1 2.5109 -7.4671 2.6975 49 1 0.1692 -7.4489 4.0309 50 1 -2.3104 -6.7214 7.7310 51 1 1.6552 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275707736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:26 Heat of formation + Delta-G solvation = -69.680047 kcal Electronic energy + Delta-G solvation = -30616.507989 eV Core-core repulsion = 26514.639655 eV Total energy + Delta-G solvation = -4101.868334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39090 -40.50561 -39.75887 -38.29618 -36.16796 -35.60097 -34.49305 -33.73062 -33.49486 -31.59944 -29.62722 -28.24355 -28.02399 -27.54999 -26.56833 -25.23927 -23.71883 -21.89508 -21.42282 -21.21474 -21.17448 -20.14104 -18.49933 -17.76755 -17.56770 -16.95490 -16.74886 -16.65725 -16.41264 -15.98262 -15.86327 -15.57676 -15.39490 -15.07244 -14.84712 -14.78716 -14.40373 -14.33141 -14.11720 -14.00750 -13.94760 -13.63343 -13.39828 -13.33935 -13.16895 -12.90299 -12.82713 -12.76426 -12.68075 -12.51328 -12.46624 -12.44158 -12.36177 -12.00630 -11.96761 -11.72133 -11.44510 -10.98896 -10.35098 -10.20692 -10.12278 -9.72824 -9.58269 -9.21871 -8.39101 -5.99627 -0.13573 0.34708 1.31055 1.37005 1.45787 1.84665 2.00454 2.19429 2.24726 2.61989 2.83760 3.17504 3.25782 3.67235 3.74554 3.82393 3.84458 4.08803 4.13151 4.18852 4.31244 4.32833 4.37788 4.39937 4.45593 4.51540 4.55598 4.58161 4.64513 4.69555 4.77401 4.80241 4.81132 4.83891 4.85270 4.98491 5.03008 5.15623 5.16617 5.27384 5.28844 5.33568 5.51809 5.54426 5.55379 5.56970 5.90467 5.95886 6.00966 6.16180 6.56261 6.62839 6.92122 7.21888 7.43635 8.02292 8.78805 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.002758 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.989219 B =10150.275390 C =11923.534134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.099 4.099 4 C -0.097 4.097 5 C -0.111 4.111 6 C -0.089 4.089 7 C -0.145 4.145 8 C 0.556 3.444 9 O -0.586 6.586 10 N -0.692 5.692 11 C 0.144 3.856 12 H 0.063 0.937 13 C -0.152 4.152 14 C 0.048 3.952 15 N -0.534 5.534 16 C 0.031 3.969 17 C 0.055 3.945 18 C 0.451 3.549 19 O -0.606 6.606 20 N -0.593 5.593 21 C -0.324 4.324 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.277 1.277 28 H -0.227 1.227 29 C -0.096 4.096 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.410 0.590 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.037 0.963 47 H 0.128 0.872 48 H 0.079 0.921 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 4.502 -23.439 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.097 4.097 5 C -0.168 4.168 6 C -0.108 4.108 7 C -0.148 4.148 8 C 0.345 3.655 9 O -0.468 6.468 10 N -0.343 5.343 11 C 0.039 3.961 12 H 0.081 0.919 13 C -0.210 4.210 14 C -0.079 4.079 15 N -0.259 5.259 16 C -0.118 4.118 17 C -0.076 4.076 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.454 4.454 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.150 1.150 29 C -0.115 4.115 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.141 0.859 38 H 0.247 0.753 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.146 0.854 48 H 0.097 0.903 49 H 0.225 0.775 50 H 0.087 0.913 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.178 5.630 -23.036 24.776 hybrid contribution -0.367 -1.413 0.856 1.692 sum 6.811 4.218 -22.179 23.582 Atomic orbital electron populations 1.20857 0.89013 1.04250 1.02945 1.20195 0.97698 0.92625 0.99020 1.21468 0.93431 0.98657 0.98132 1.20193 0.94356 0.95751 0.99358 1.20841 0.99984 0.92481 1.03486 1.21196 1.00249 0.91258 0.98075 1.19992 0.94367 0.93358 1.07056 1.18502 0.86809 0.84778 0.75451 1.90696 1.15002 1.88268 1.52840 1.45731 1.10876 1.04741 1.72904 1.21069 0.94917 0.82621 0.97492 0.91868 1.22065 1.02555 1.02086 0.94326 1.22591 1.00283 0.96016 0.89023 1.61445 1.11686 1.49860 1.02861 1.22328 0.92429 0.99797 0.97204 1.21865 0.96533 0.94390 0.94840 1.20957 0.81828 0.86131 0.87191 1.90542 1.63909 1.24518 1.69962 1.42035 1.35755 1.21069 1.24686 1.18964 1.18504 1.05472 1.02414 0.92919 1.26119 0.96128 1.03533 0.95754 1.69809 1.27700 1.41267 1.19080 0.85367 0.78436 0.77005 0.80715 1.18445 1.20224 1.14998 1.21365 0.92348 0.99253 0.98529 0.91240 0.89469 0.90568 0.83016 0.89692 0.89838 0.91458 0.85912 0.75324 0.90506 0.93870 0.89595 0.87332 0.91018 0.92524 0.93077 0.94444 0.85406 0.90275 0.77523 0.91253 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.23 0.71 -1.12 16 2 C -0.10 -2.00 5.87 -19.90 -0.12 -2.12 16 3 C -0.10 -1.89 9.35 22.33 0.21 -1.68 16 4 C -0.10 -2.03 5.87 -19.90 -0.12 -2.14 16 5 C -0.11 -1.61 10.01 71.23 0.71 -0.90 16 6 C -0.09 -2.34 9.24 22.53 0.21 -2.13 16 7 C -0.14 -4.04 5.87 -20.09 -0.12 -4.16 16 8 C 0.56 16.92 7.74 86.79 0.67 17.60 16 9 O -0.59 -21.44 16.01 -3.87 -0.06 -21.50 16 10 N -0.69 -17.08 4.75 -445.40 -2.12 -19.20 16 11 C 0.14 3.09 2.35 44.99 0.11 3.20 16 12 H 0.06 1.71 6.23 -2.39 -0.01 1.70 16 13 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 14 C 0.05 0.88 4.52 86.30 0.39 1.27 16 15 N -0.53 -14.86 4.22 -927.06 -3.92 -18.78 16 16 C 0.03 0.98 8.96 127.69 1.14 2.12 16 17 C 0.05 1.52 5.45 85.56 0.47 1.99 16 18 C 0.45 19.60 7.47 87.66 0.66 20.25 16 19 O -0.61 -32.89 13.91 -3.05 -0.04 -32.94 16 20 N -0.59 -27.11 5.09 -306.99 -1.56 -28.67 16 21 C -0.32 -18.75 10.16 84.04 0.85 -17.90 16 22 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 24 N -0.94 -56.41 13.96 21.66 0.30 -56.10 16 25 Si 0.96 37.98 27.74 68.60 1.90 39.89 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 27 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.23 -7.31 6.52 99.48 0.65 -6.67 16 29 C -0.10 -2.32 9.19 22.53 0.21 -2.11 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 32 H 0.08 1.10 8.08 -2.38 -0.02 1.09 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.07 0.99 8.08 -2.39 -0.02 0.98 16 37 H 0.12 3.35 7.65 -2.91 -0.02 3.33 16 38 H 0.41 8.99 6.64 -92.71 -0.62 8.37 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.11 1.43 7.93 -2.39 -0.02 1.41 16 43 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.06 1.84 6.58 -2.39 -0.02 1.83 16 45 H 0.05 2.11 5.83 -2.39 -0.01 2.10 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.13 2.67 7.93 -2.38 -0.02 2.65 16 48 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 49 H 0.39 14.52 5.76 -92.71 -0.53 13.98 16 50 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 51 H 0.14 2.86 6.41 -2.91 -0.02 2.84 16 Total: -1.00 -83.45 415.60 1.38 -82.07 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.26 Total: 45.34 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 7.13 Total: 9.88 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -7.29 Total: -122.74 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.10 Total: -54.44 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.89 kcal Total: -83.45 1.38 -82.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275707736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.392 kcal (2) G-P(sol) polarization free energy of solvation -83.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds