Wall clock time and date at job start Wed Apr 1 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 120.00247 * 2 1 4 4 N 1.34774 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.39955 * 120.00280 * 184.50581 * 4 2 1 6 6 C 1.38647 * 119.99758 * 325.26428 * 5 4 2 7 7 C 1.39451 * 119.77788 * 180.02562 * 6 5 4 8 8 C 1.47858 * 120.10735 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00160 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00052 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00024 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47359 * 35.00351 * 11 10 8 13 13 C 1.53000 * 109.47270 * 274.99539 * 11 10 8 14 14 C 1.53005 * 109.46807 * 155.00158 * 11 10 8 15 15 C 1.53005 * 109.46714 * 294.99579 * 14 11 10 16 16 C 1.53004 * 109.46632 * 180.02562 * 15 14 11 17 17 N 1.46498 * 109.46831 * 180.02562 * 16 15 14 18 18 C 1.36939 * 120.00160 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99945 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00280 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99906 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99902 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47408 * 89.99603 * 22 20 18 24 24 H 1.48496 * 109.47006 * 209.99905 * 22 20 18 25 25 H 1.48504 * 109.47037 * 329.99776 * 22 20 18 26 26 C 1.39615 * 119.78085 * 359.97438 * 7 6 5 27 27 C 1.37981 * 119.99748 * 0.02562 * 26 7 6 28 28 C 1.38259 * 120.21667 * 359.72412 * 27 26 7 29 29 C 1.50703 * 119.88536 * 180.27648 * 28 27 26 30 30 H 1.09003 * 109.46631 * 269.99764 * 1 2 3 31 31 H 1.08992 * 109.46958 * 29.99333 * 1 2 3 32 32 H 1.08995 * 109.47313 * 149.99869 * 1 2 3 33 33 H 0.97006 * 120.00160 * 4.50324 * 4 2 1 34 34 H 1.07997 * 120.10832 * 359.97240 * 6 5 4 35 35 H 0.97000 * 119.99784 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47393 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47279 * 300.00909 * 13 11 10 38 38 H 1.09003 * 109.47024 * 60.00129 * 13 11 10 39 39 H 1.08994 * 109.47371 * 54.99593 * 14 11 10 40 40 H 1.09000 * 109.47307 * 175.00200 * 14 11 10 41 41 H 1.08994 * 109.47214 * 300.00111 * 15 14 11 42 42 H 1.08995 * 109.47302 * 60.00691 * 15 14 11 43 43 H 1.09001 * 109.47050 * 299.99424 * 16 15 14 44 44 H 1.09000 * 109.47432 * 59.99954 * 16 15 14 45 45 H 0.97002 * 120.00282 * 359.97438 * 17 16 15 46 46 H 0.96998 * 119.99928 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.00498 * 180.02562 * 26 7 6 48 48 H 1.07996 * 119.89473 * 179.97438 * 27 26 7 49 49 H 1.09005 * 109.47105 * 270.27171 * 29 28 27 50 50 H 1.08997 * 109.47047 * 30.27243 * 29 28 27 51 51 H 1.09002 * 109.46822 * 150.27540 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5772 -1.1692 0.0947 6 6 4.3140 -0.1570 -0.5010 7 6 5.7051 -0.1638 -0.4037 8 6 6.4982 0.9117 -1.0367 9 8 5.9377 1.8035 -1.6434 10 7 7.8426 0.9028 -0.9417 11 6 8.6283 1.9687 -1.5684 12 1 8.0813 2.9093 -1.5037 13 6 8.8764 1.6228 -3.0380 14 6 9.9688 2.1074 -0.8439 15 6 9.7260 2.5746 0.5927 16 6 11.0665 2.7140 1.3170 17 7 10.8341 3.1607 2.6927 18 6 11.8940 3.3557 3.5376 19 1 12.9013 3.1798 3.1899 20 6 11.6738 3.7796 4.8410 21 7 12.6925 3.9665 5.6531 22 14 9.9316 4.0832 5.4426 23 1 9.3821 2.8306 6.0206 24 1 9.9447 5.1439 6.4818 25 1 9.0831 4.5167 4.3036 26 6 6.3466 -1.1894 0.2933 27 6 5.6042 -2.1922 0.8826 28 6 4.2247 -2.1826 0.7905 29 6 3.4210 -3.2782 1.4423 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6981 -2.0060 -0.0669 34 1 3.8124 0.6336 -1.0393 35 1 8.2899 0.1910 -0.4579 36 1 9.4613 2.4157 -3.5041 37 1 9.4233 0.6822 -3.1026 38 1 7.9214 1.5239 -3.5542 39 1 10.4766 1.1431 -0.8314 40 1 10.5888 2.8379 -1.3636 41 1 9.2182 3.5390 0.5802 42 1 9.1061 1.8442 1.1125 43 1 11.5747 1.7497 1.3295 44 1 11.6862 3.4446 0.7971 45 1 9.9294 3.3184 3.0051 46 1 12.5386 4.2623 6.5640 47 1 7.4237 -1.1980 0.3713 48 1 6.1021 -2.9850 1.4210 49 1 3.2852 -4.0980 0.7369 50 1 3.9494 -3.6411 2.3238 51 1 2.4470 -2.8877 1.7375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277194006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:37 Heat of formation + Delta-G solvation = -46.996958 kcal Electronic energy + Delta-G solvation = -29934.324368 eV Core-core repulsion = 25833.439647 eV Total energy + Delta-G solvation = -4100.884721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13010 -39.99599 -38.61190 -36.79629 -35.25687 -34.97894 -33.17847 -32.48469 -31.47858 -31.02877 -29.75049 -29.17470 -27.50838 -25.86992 -23.68897 -23.13675 -22.46046 -21.08012 -20.95672 -20.91470 -20.42706 -18.54742 -17.47762 -17.46147 -16.64170 -16.54936 -15.97479 -15.56696 -15.11101 -14.99874 -14.63167 -14.56486 -14.40578 -14.17603 -13.96885 -13.86600 -13.81346 -13.57087 -13.15413 -12.98691 -12.84873 -12.79792 -12.61897 -12.27562 -12.20804 -12.17183 -12.07797 -11.80445 -11.66790 -11.22847 -10.94208 -10.86623 -10.80507 -10.48984 -10.36096 -10.20940 -10.07146 -9.95577 -9.55671 -9.20240 -9.01121 -8.85257 -8.52685 -7.18872 -5.73652 -3.08597 0.52844 1.00487 2.11940 2.56905 2.73295 3.08461 3.41460 3.46176 3.48899 3.62086 4.22884 4.34368 4.42844 4.60044 4.63139 4.65853 4.72532 4.73836 4.86142 4.91829 5.01239 5.06227 5.08542 5.12444 5.23651 5.34150 5.39659 5.46417 5.47064 5.56820 5.59528 5.63590 5.73105 5.84768 5.88693 5.96310 5.98972 6.04794 6.05879 6.10546 6.13517 6.17876 6.33631 6.46617 6.62134 6.79183 6.82664 6.89566 7.43644 7.66903 8.03153 8.16185 8.45837 9.25394 9.98222 10.18420 11.44862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.002468 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.214297 B =11342.937814 C =12699.425879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.515 6.515 4 N -0.673 5.673 5 C 0.130 3.870 6 C -0.059 4.059 7 C -0.121 4.121 8 C 0.559 3.441 9 O -0.534 6.534 10 N -0.717 5.717 11 C 0.140 3.860 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.122 4.122 15 C -0.131 4.131 16 C 0.157 3.843 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.094 4.094 27 C -0.109 4.109 28 C -0.089 4.089 29 C -0.118 4.118 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.153 0.847 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.154 -19.128 -16.634 35.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.389 6.389 4 N -0.320 5.320 5 C 0.036 3.964 6 C -0.080 4.080 7 C -0.125 4.125 8 C 0.347 3.653 9 O -0.411 6.411 10 N -0.369 5.369 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.220 4.220 14 C -0.161 4.161 15 C -0.169 4.169 16 C 0.030 3.970 17 N -0.404 5.404 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.113 4.113 27 C -0.127 4.127 28 C -0.091 4.091 29 C -0.174 4.174 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.171 0.829 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.148 0.852 48 H 0.152 0.848 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.944 -17.654 -16.985 34.256 hybrid contribution -1.132 -0.542 0.915 1.553 sum -25.076 -18.196 -16.071 34.902 Atomic orbital electron populations 1.21887 0.90472 1.05344 1.05240 1.21113 0.91030 0.83178 0.75370 1.90822 1.70222 1.31154 1.46739 1.43594 1.04878 1.10003 1.73506 1.17431 0.82771 0.97116 0.99068 1.21372 0.92224 0.98016 0.96357 1.19838 0.93817 0.96643 1.02199 1.18195 0.82161 0.85120 0.79870 1.90779 1.70923 1.36983 1.42436 1.46013 1.05954 1.28771 1.56179 1.21073 0.92105 0.91232 0.91947 0.89229 1.22168 1.02052 1.01926 0.95853 1.21842 0.95457 1.02551 0.96218 1.21796 0.99101 1.01502 0.94470 1.20627 0.93826 0.97177 0.85362 1.42746 1.05616 1.82753 1.09240 1.19078 0.88400 1.37938 0.91894 0.89253 1.24677 0.96729 1.01551 0.96337 1.69704 1.28868 1.53186 1.06601 0.86541 0.85752 0.77852 0.78386 1.21096 1.21695 1.20295 1.21323 1.00128 0.93441 0.96443 1.20806 0.92408 0.99127 1.00407 1.19887 0.94487 0.97160 0.97595 1.20800 0.99646 0.96262 1.00738 0.88364 0.88321 0.89919 0.75255 0.82950 0.76476 0.91447 0.92473 0.92294 0.91223 0.89998 0.91938 0.92111 0.95699 0.95658 0.80696 0.93100 0.85238 0.84798 0.90729 0.90589 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.31 36.01 0.37 -0.30 16 2 C 0.50 4.45 7.78 -10.99 -0.09 4.37 16 3 O -0.52 -7.40 14.51 5.55 0.08 -7.32 16 4 N -0.67 -4.75 4.73 -9.89 -0.05 -4.79 16 5 C 0.13 1.29 6.28 -83.74 -0.53 0.77 16 6 C -0.06 -0.77 8.24 -38.98 -0.32 -1.09 16 7 C -0.12 -1.52 5.87 -104.99 -0.62 -2.13 16 8 C 0.56 7.97 7.74 -12.32 -0.10 7.88 16 9 O -0.53 -9.56 16.01 5.32 0.09 -9.47 16 10 N -0.72 -8.36 4.48 -54.75 -0.25 -8.60 16 11 C 0.14 1.66 2.57 -67.93 -0.17 1.48 16 12 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 13 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 14 C -0.12 -1.42 4.75 -26.73 -0.13 -1.55 16 15 C -0.13 -2.02 5.22 -26.73 -0.14 -2.15 16 16 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 17 N -0.76 -18.80 5.41 -59.90 -0.32 -19.12 16 18 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 19 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -30.05 13.97 55.49 0.78 -29.27 16 22 Si 0.88 22.98 27.74 -169.99 -4.71 18.26 16 23 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 26 C -0.09 -0.91 9.54 -39.16 -0.37 -1.28 16 27 C -0.11 -0.90 9.67 -39.67 -0.38 -1.28 16 28 C -0.09 -0.71 5.90 -104.35 -0.62 -1.33 16 29 C -0.12 -0.54 9.46 36.01 0.34 -0.20 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.41 1.28 7.85 -40.82 -0.32 0.96 16 34 H 0.15 2.38 5.79 -52.49 -0.30 2.07 16 35 H 0.40 3.76 6.63 -40.82 -0.27 3.49 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.36 8.83 5.53 -40.82 -0.23 8.60 16 46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 47 H 0.13 0.97 6.40 -52.48 -0.34 0.64 16 48 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 51 H 0.07 0.25 7.16 -51.93 -0.37 -0.12 16 LS Contribution 417.53 15.07 6.29 6.29 Total: -1.00 -39.50 417.53 -8.90 -48.40 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.13 Total: 8.00 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.67 Total: -2.37 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.16 Total: -61.79 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.17 Total: -16.80 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.26 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -39.50 -8.90 -48.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277194006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.407 kcal (2) G-P(sol) polarization free energy of solvation -39.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds