Wall clock time and date at job start Wed Apr 1 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.92900 * 2 1 4 4 C 1.38094 * 120.07846 * 180.02562 * 3 2 1 5 5 C 1.38931 * 119.92404 * 359.97154 * 4 3 2 6 6 N 1.39723 * 120.07478 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99924 * 35.10094 * 6 5 4 8 8 O 1.21378 * 120.00328 * 355.37684 * 7 6 5 9 9 C 1.49359 * 119.99840 * 175.37955 * 7 6 5 10 10 O 1.21357 * 119.99849 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99800 * 179.97438 * 9 7 6 12 12 C 1.46501 * 119.99621 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46813 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46634 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.47017 * 304.99517 * 14 13 12 16 16 N 1.46500 * 109.47251 * 65.00236 * 14 13 12 17 17 C 1.36930 * 119.99876 * 204.71886 * 16 14 13 18 18 H 1.08004 * 119.99996 * 0.27843 * 17 16 14 19 19 C 1.38816 * 120.00313 * 180.27331 * 17 16 14 20 20 N 1.31625 * 119.99555 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00455 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47004 * 60.00138 * 21 19 17 23 23 H 1.48499 * 109.47517 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46944 * 300.00370 * 21 19 17 25 25 C 1.53007 * 109.46733 * 185.00097 * 14 13 12 26 26 C 1.52998 * 109.47207 * 59.99951 * 25 14 13 27 27 C 1.52994 * 109.46909 * 180.02562 * 25 14 13 28 28 C 1.38931 * 119.84625 * 0.28180 * 5 4 3 29 29 C 1.38100 * 119.92304 * 359.46537 * 28 5 4 30 30 H 1.09001 * 109.46897 * 89.99704 * 1 2 3 31 31 H 1.08994 * 109.47688 * 210.00643 * 1 2 3 32 32 H 1.09003 * 109.46568 * 330.00219 * 1 2 3 33 33 H 1.08009 * 119.95995 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.03783 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99644 * 215.09583 * 6 5 4 36 36 H 0.96993 * 120.00125 * 0.02562 * 11 9 7 37 37 H 1.09006 * 109.47035 * 60.00372 * 12 11 9 38 38 H 1.08994 * 109.47550 * 300.00393 * 12 11 9 39 39 H 1.08997 * 109.47058 * 60.00619 * 13 12 11 40 40 H 1.09002 * 109.47015 * 299.99994 * 13 12 11 41 41 H 0.97004 * 120.00146 * 24.99748 * 16 14 13 42 42 H 0.96996 * 119.99526 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.46731 * 300.00062 * 25 14 13 44 44 H 1.09001 * 109.46967 * 59.99651 * 26 25 14 45 45 H 1.08993 * 109.47179 * 180.02562 * 26 25 14 46 46 H 1.09009 * 109.47072 * 300.00157 * 26 25 14 47 47 H 1.08994 * 109.47235 * 59.99939 * 27 25 14 48 48 H 1.09004 * 109.47153 * 180.02562 * 27 25 14 49 49 H 1.09004 * 109.47365 * 299.99540 * 27 25 14 50 50 H 1.08002 * 120.03649 * 179.70016 * 28 5 4 51 51 H 1.07998 * 119.96031 * 180.23518 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2741 -0.0002 -0.0005 6 7 5.6713 -0.0003 -0.0005 7 6 6.3452 0.9546 0.6706 8 8 5.7413 1.8620 1.2047 9 6 7.8352 0.8964 0.7571 10 8 8.4389 -0.0110 0.2234 11 7 8.5091 1.8517 1.4278 12 6 9.9705 1.7942 1.5130 13 6 10.4814 2.9877 2.3226 14 6 12.0077 2.9280 2.4110 15 1 12.3105 1.9641 2.8198 16 7 12.5813 3.0932 1.0731 17 6 13.8247 2.5917 0.7946 18 1 14.3806 2.0706 1.5600 19 6 14.3706 2.7531 -0.4715 20 7 13.6932 3.3886 -1.4041 21 14 16.0664 2.0684 -0.8516 22 1 16.0637 0.5976 -0.6470 23 1 16.4180 2.3718 -2.2622 24 1 17.0661 2.6921 0.0523 25 6 12.5099 4.0492 3.3231 26 6 11.9109 3.8768 4.7204 27 6 14.0362 3.9899 3.4111 28 6 3.5778 -1.2024 -0.0058 29 6 2.1968 -1.1987 0.0000 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3632 0.8901 0.5138 33 1 1.6551 2.1328 -0.0004 34 1 4.1161 2.1385 -0.0010 35 1 6.1563 -0.6877 -0.4835 36 1 8.0265 2.5767 1.8546 37 1 10.3946 1.8281 0.5094 38 1 10.2698 0.8676 2.0028 39 1 10.0574 2.9543 3.3261 40 1 10.1822 3.9141 1.8323 41 1 12.0820 3.5612 0.3857 42 1 14.0748 3.5017 -2.2886 43 1 12.2070 5.0132 2.9144 44 1 12.2137 2.9127 5.1291 45 1 12.2682 4.6756 5.3700 46 1 10.8235 3.9192 4.6573 47 1 14.4625 4.1130 2.4156 48 1 14.3939 4.7883 4.0613 49 1 14.3394 3.0259 3.8197 50 1 4.1159 -2.1388 -0.0107 51 1 1.6549 -2.1329 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277597581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:49 Heat of formation + Delta-G solvation = -45.568643 kcal Electronic energy + Delta-G solvation = -29580.698352 eV Core-core repulsion = 25479.875567 eV Total energy + Delta-G solvation = -4100.822785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19702 -39.63733 -38.42907 -37.48705 -35.75020 -34.70035 -33.06279 -31.88713 -31.29460 -31.20154 -29.59473 -27.39395 -26.42702 -25.65052 -24.11190 -23.30178 -22.81060 -21.54811 -21.16855 -20.41126 -19.27314 -18.83018 -17.69861 -17.17158 -16.57101 -16.24848 -15.70325 -15.62088 -15.27924 -14.99657 -14.49500 -14.38838 -14.07582 -14.00412 -13.95509 -13.76080 -13.60061 -13.49618 -13.22643 -12.78392 -12.64100 -12.45153 -12.16462 -12.02316 -11.76481 -11.63019 -11.62083 -11.37860 -11.26564 -10.91406 -10.78409 -10.64553 -10.53954 -10.45650 -10.26942 -10.07089 -9.96384 -9.64559 -9.46127 -9.21900 -9.08021 -8.83415 -8.36301 -6.94760 -5.75770 -3.03595 0.76831 1.11251 1.44159 2.18256 3.06570 3.44548 3.46472 3.49760 3.50148 3.51065 4.32207 4.52471 4.57862 4.59810 4.72356 4.94678 5.08486 5.13816 5.19907 5.26688 5.32612 5.41489 5.45441 5.51468 5.56861 5.67545 5.69135 5.71590 5.87808 5.95920 5.96436 5.98518 6.13335 6.14343 6.17146 6.22620 6.27796 6.31057 6.38260 6.42580 6.61124 6.61576 6.67958 6.69636 6.79646 6.82706 7.11435 7.25966 7.33336 7.56198 7.71932 7.92902 8.42316 9.53773 10.09974 10.44831 11.46517 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.001893 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.582941 B =14785.388369 C =15958.599924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.647 5.647 7 C 0.510 3.490 8 O -0.503 6.503 9 C 0.504 3.496 10 O -0.514 6.514 11 N -0.692 5.692 12 C 0.119 3.881 13 C -0.138 4.138 14 C 0.186 3.814 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.233 4.233 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.136 4.136 29 C -0.103 4.103 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.424 0.576 36 H 0.409 0.591 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.029 0.971 49 H 0.040 0.960 50 H 0.128 0.872 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.786 -5.560 6.197 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.135 4.135 5 C 0.041 3.959 6 N -0.293 5.293 7 C 0.293 3.707 8 O -0.376 6.376 9 C 0.283 3.717 10 O -0.390 6.390 11 N -0.344 5.344 12 C -0.003 4.003 13 C -0.176 4.176 14 C 0.075 3.925 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.364 4.364 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.133 4.133 26 C -0.205 4.205 27 C -0.198 4.198 28 C -0.156 4.156 29 C -0.121 4.121 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.262 0.738 36 H 0.245 0.755 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.146 0.854 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.507 -5.646 6.188 24.955 hybrid contribution 0.935 -0.160 -0.493 1.069 sum -22.572 -5.806 5.696 23.993 Atomic orbital electron populations 1.20773 0.91091 1.02776 1.02294 1.19965 0.96243 0.93150 1.00839 1.20958 0.93493 0.97756 0.99904 1.21325 0.94274 0.97831 1.00046 1.17761 0.81776 0.94445 1.01873 1.43146 1.04951 1.30858 1.50389 1.20517 0.89143 0.82295 0.78768 1.90752 1.69691 1.32798 1.44406 1.19725 0.87221 0.83791 0.80999 1.90818 1.69317 1.33953 1.44922 1.45935 1.09173 1.26751 1.52502 1.21671 0.75844 0.99437 1.03313 1.22163 0.98583 0.97428 0.99453 1.20185 0.88579 0.96094 0.87616 0.93203 1.42445 1.18708 1.67827 1.07237 1.19143 0.93173 1.28539 0.95523 0.91052 1.24719 0.98500 1.01350 0.96364 1.69642 1.37847 1.46918 1.03571 0.86342 0.84516 0.78737 0.77055 1.21318 1.21839 1.21340 1.21776 0.96510 1.00605 0.94391 1.21942 1.00095 1.00850 0.97624 1.21832 0.95451 0.99186 1.03288 1.20942 0.94582 0.96488 1.03569 1.20821 0.93174 0.97756 1.00398 0.91200 0.91593 0.91538 0.85597 0.84163 0.73793 0.75522 0.89001 0.91108 0.91237 0.91336 0.78297 0.93539 0.92142 0.93271 0.93794 0.93172 0.89467 0.95211 0.94127 0.85369 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.10 -0.81 5.88 -104.58 -0.62 -1.43 16 3 C -0.10 -0.93 9.69 -39.62 -0.38 -1.31 16 4 C -0.11 -1.25 8.69 -39.38 -0.34 -1.60 16 5 C 0.14 1.44 6.30 -83.75 -0.53 0.91 16 6 N -0.65 -7.08 5.32 -10.29 -0.05 -7.14 16 7 C 0.51 6.58 7.73 -11.63 -0.09 6.49 16 8 O -0.50 -7.03 13.91 5.47 0.08 -6.95 16 9 C 0.50 7.27 7.89 -11.63 -0.09 7.18 16 10 O -0.51 -8.79 16.48 5.49 0.09 -8.70 16 11 N -0.69 -9.37 5.55 -60.76 -0.34 -9.70 16 12 C 0.12 1.86 5.56 -4.04 -0.02 1.84 16 13 C -0.14 -2.01 4.65 -26.73 -0.12 -2.13 16 14 C 0.19 3.35 2.02 -67.92 -0.14 3.21 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -16.53 4.46 -53.42 -0.24 -16.77 16 17 C -0.23 -6.03 7.55 -15.06 -0.11 -6.15 16 18 H 0.07 1.81 7.39 -52.48 -0.39 1.43 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 21 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.11 -1.85 2.69 -90.62 -0.24 -2.10 16 26 C -0.15 -1.97 8.85 37.16 0.33 -1.64 16 27 C -0.14 -2.54 8.25 37.15 0.31 -2.23 16 28 C -0.14 -1.18 9.97 -39.38 -0.39 -1.57 16 29 C -0.10 -0.80 9.69 -39.61 -0.38 -1.19 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.14 1.67 6.23 -52.48 -0.33 1.35 16 35 H 0.42 4.04 8.30 -40.82 -0.34 3.70 16 36 H 0.41 4.76 7.94 -40.82 -0.32 4.43 16 37 H 0.09 1.77 7.75 -51.93 -0.40 1.36 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.60 6.32 -51.92 -0.33 0.27 16 47 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -30.89 416.34 -9.16 -40.04 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -8.10 Total: 14.96 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.57 Total: -2.43 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.09 Total: -60.24 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.17 Total: -15.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.89 -9.16 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277597581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.524 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds