Wall clock time and date at job start Wed Apr 1 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.92900 * 2 1 4 4 C 1.38094 * 120.07846 * 180.02562 * 3 2 1 5 5 C 1.38931 * 119.92404 * 359.97154 * 4 3 2 6 6 N 1.39723 * 120.07478 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99924 * 35.10094 * 6 5 4 8 8 O 1.21378 * 120.00328 * 355.37684 * 7 6 5 9 9 C 1.49359 * 119.99840 * 175.37955 * 7 6 5 10 10 O 1.21357 * 119.99849 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99800 * 179.97438 * 9 7 6 12 12 C 1.46501 * 119.99621 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46813 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46634 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.47017 * 304.99517 * 14 13 12 16 16 N 1.46500 * 109.47251 * 65.00236 * 14 13 12 17 17 C 1.36930 * 119.99876 * 204.71886 * 16 14 13 18 18 H 1.08004 * 119.99996 * 0.27843 * 17 16 14 19 19 C 1.38816 * 120.00313 * 180.27331 * 17 16 14 20 20 N 1.31625 * 119.99555 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00455 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47004 * 60.00138 * 21 19 17 23 23 H 1.48499 * 109.47517 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46944 * 300.00370 * 21 19 17 25 25 C 1.53007 * 109.46733 * 185.00097 * 14 13 12 26 26 C 1.52998 * 109.47207 * 59.99951 * 25 14 13 27 27 C 1.52994 * 109.46909 * 180.02562 * 25 14 13 28 28 C 1.38931 * 119.84625 * 0.28180 * 5 4 3 29 29 C 1.38100 * 119.92304 * 359.46537 * 28 5 4 30 30 H 1.09001 * 109.46897 * 89.99704 * 1 2 3 31 31 H 1.08994 * 109.47688 * 210.00643 * 1 2 3 32 32 H 1.09003 * 109.46568 * 330.00219 * 1 2 3 33 33 H 1.08009 * 119.95995 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.03783 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99644 * 215.09583 * 6 5 4 36 36 H 0.96993 * 120.00125 * 0.02562 * 11 9 7 37 37 H 1.09006 * 109.47035 * 60.00372 * 12 11 9 38 38 H 1.08994 * 109.47550 * 300.00393 * 12 11 9 39 39 H 1.08997 * 109.47058 * 60.00619 * 13 12 11 40 40 H 1.09002 * 109.47015 * 299.99994 * 13 12 11 41 41 H 0.97004 * 120.00146 * 24.99748 * 16 14 13 42 42 H 0.96996 * 119.99526 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.46731 * 300.00062 * 25 14 13 44 44 H 1.09001 * 109.46967 * 59.99651 * 26 25 14 45 45 H 1.08993 * 109.47179 * 180.02562 * 26 25 14 46 46 H 1.09009 * 109.47072 * 300.00157 * 26 25 14 47 47 H 1.08994 * 109.47235 * 59.99939 * 27 25 14 48 48 H 1.09004 * 109.47153 * 180.02562 * 27 25 14 49 49 H 1.09004 * 109.47365 * 299.99540 * 27 25 14 50 50 H 1.08002 * 120.03649 * 179.70016 * 28 5 4 51 51 H 1.07998 * 119.96031 * 180.23518 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2741 -0.0002 -0.0005 6 7 5.6713 -0.0003 -0.0005 7 6 6.3452 0.9546 0.6706 8 8 5.7413 1.8620 1.2047 9 6 7.8352 0.8964 0.7571 10 8 8.4389 -0.0110 0.2234 11 7 8.5091 1.8517 1.4278 12 6 9.9705 1.7942 1.5130 13 6 10.4814 2.9877 2.3226 14 6 12.0077 2.9280 2.4110 15 1 12.3105 1.9641 2.8198 16 7 12.5813 3.0932 1.0731 17 6 13.8247 2.5917 0.7946 18 1 14.3806 2.0706 1.5600 19 6 14.3706 2.7531 -0.4715 20 7 13.6932 3.3886 -1.4041 21 14 16.0664 2.0684 -0.8516 22 1 16.0637 0.5976 -0.6470 23 1 16.4180 2.3718 -2.2622 24 1 17.0661 2.6921 0.0523 25 6 12.5099 4.0492 3.3231 26 6 11.9109 3.8768 4.7204 27 6 14.0362 3.9899 3.4111 28 6 3.5778 -1.2024 -0.0058 29 6 2.1968 -1.1987 0.0000 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3632 0.8901 0.5138 33 1 1.6551 2.1328 -0.0004 34 1 4.1161 2.1385 -0.0010 35 1 6.1563 -0.6877 -0.4835 36 1 8.0265 2.5767 1.8546 37 1 10.3946 1.8281 0.5094 38 1 10.2698 0.8676 2.0028 39 1 10.0574 2.9543 3.3261 40 1 10.1822 3.9141 1.8323 41 1 12.0820 3.5612 0.3857 42 1 14.0748 3.5017 -2.2886 43 1 12.2070 5.0132 2.9144 44 1 12.2137 2.9127 5.1291 45 1 12.2682 4.6756 5.3700 46 1 10.8235 3.9192 4.6573 47 1 14.4625 4.1130 2.4156 48 1 14.3939 4.7883 4.0613 49 1 14.3394 3.0259 3.8197 50 1 4.1159 -2.1388 -0.0107 51 1 1.6549 -2.1329 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277597581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:48 Heat of formation + Delta-G solvation = -65.515562 kcal Electronic energy + Delta-G solvation = -29581.563315 eV Core-core repulsion = 25479.875567 eV Total energy + Delta-G solvation = -4101.687748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.18979 -40.59092 -39.41283 -38.92203 -36.74879 -35.85049 -34.88826 -32.72718 -32.55997 -31.92484 -31.28878 -28.33483 -27.60269 -26.98525 -25.44190 -24.41980 -23.93790 -22.57305 -22.29243 -21.42411 -20.67151 -19.90727 -19.07400 -18.58473 -17.65737 -17.33968 -16.87447 -16.69586 -16.36583 -16.17911 -15.74367 -15.56474 -15.37974 -15.25938 -14.88866 -14.79906 -14.57868 -14.56827 -14.39713 -14.28221 -13.51084 -13.28793 -13.20100 -13.07813 -12.95474 -12.91174 -12.81796 -12.66750 -12.51545 -12.40275 -12.19283 -12.05974 -12.01410 -11.94577 -11.67995 -11.38178 -11.30954 -11.18270 -10.83868 -10.71131 -10.33126 -9.91050 -9.09862 -8.89244 -7.86596 -5.11208 -0.11419 0.43067 0.51944 1.15451 1.48080 1.49441 1.54706 1.97772 2.47867 2.60582 2.78567 3.25370 3.46227 3.86789 3.90843 3.93397 4.00530 4.09504 4.15056 4.26442 4.38312 4.41169 4.46146 4.47263 4.51153 4.67368 4.78878 4.80163 4.83626 4.89950 4.95613 5.01872 5.05738 5.08440 5.11402 5.19292 5.22945 5.25716 5.29130 5.34538 5.38513 5.41453 5.45846 5.60307 5.67710 5.72230 5.80712 5.83028 6.03597 6.22151 6.35625 6.59290 6.81218 7.42448 8.19239 8.41111 9.36695 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.001893 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.582941 B =14785.388369 C =15958.599924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.112 4.112 4 C -0.134 4.134 5 C 0.109 3.891 6 N -0.635 5.635 7 C 0.515 3.485 8 O -0.516 6.516 9 C 0.504 3.496 10 O -0.545 6.545 11 N -0.680 5.680 12 C 0.130 3.870 13 C -0.124 4.124 14 C 0.180 3.820 15 H 0.045 0.955 16 N -0.730 5.730 17 C -0.211 4.211 18 H 0.076 0.924 19 C -0.080 4.080 20 N -0.970 5.970 21 Si 0.957 3.043 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.279 1.279 25 C -0.107 4.107 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.135 4.135 29 C -0.104 4.104 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.429 0.571 36 H 0.421 0.579 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.371 0.629 42 H 0.245 0.755 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.042 0.958 50 H 0.147 0.853 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.951 -6.411 8.327 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.130 4.130 4 C -0.154 4.154 5 C 0.016 3.984 6 N -0.282 5.282 7 C 0.297 3.703 8 O -0.391 6.391 9 C 0.284 3.716 10 O -0.423 6.423 11 N -0.333 5.333 12 C 0.007 3.993 13 C -0.162 4.162 14 C 0.071 3.929 15 H 0.063 0.937 16 N -0.369 5.369 17 C -0.343 4.343 18 H 0.094 0.906 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.788 3.212 22 H -0.209 1.209 23 H -0.229 1.229 24 H -0.206 1.206 25 C -0.128 4.128 26 C -0.197 4.197 27 C -0.195 4.195 28 C -0.155 4.155 29 C -0.123 4.123 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.268 0.732 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.203 0.797 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.164 0.836 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.701 -6.506 8.382 27.805 hybrid contribution 1.488 0.072 -1.076 1.837 sum -24.213 -6.434 7.306 26.097 Atomic orbital electron populations 1.20834 0.89027 1.03775 1.03202 1.20345 0.97803 0.92754 0.99206 1.21176 0.92864 0.99098 0.99889 1.21323 0.95255 0.97356 1.01460 1.17977 0.81316 0.95298 1.03801 1.43067 1.05408 1.30212 1.49531 1.20126 0.88176 0.82750 0.79227 1.90749 1.69550 1.33426 1.45404 1.20046 0.88024 0.83278 0.80278 1.90800 1.70127 1.35180 1.46176 1.45772 1.08346 1.26944 1.52236 1.21374 0.76886 0.99893 1.01111 1.22044 0.96034 0.96875 1.01256 1.20434 0.90655 0.96385 0.85408 0.93715 1.42618 1.17840 1.67365 1.09099 1.19448 0.93794 1.26069 0.94990 0.90636 1.25383 1.01727 1.03234 0.96852 1.69791 1.39252 1.49583 1.03548 0.85437 0.81374 0.78195 0.76195 1.20930 1.22901 1.20585 1.21649 0.95629 0.99229 0.96279 1.21858 1.01135 1.01696 0.95011 1.21762 0.96489 1.00072 1.01200 1.21207 0.95227 0.96412 1.02623 1.21208 0.92898 0.98917 0.99246 0.90209 0.90254 0.90959 0.84261 0.85918 0.73163 0.74113 0.93061 0.91445 0.87617 0.91073 0.79685 0.94571 0.92945 0.92688 0.92505 0.91184 0.93547 0.93262 0.93883 0.83573 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.24 0.71 -0.18 16 2 C -0.10 -1.39 5.88 -19.84 -0.12 -1.51 16 3 C -0.11 -1.92 9.69 22.25 0.22 -1.70 16 4 C -0.13 -2.93 8.69 22.40 0.19 -2.74 16 5 C 0.11 2.28 6.30 38.22 0.24 2.52 16 6 N -0.64 -13.96 5.32 -304.84 -1.62 -15.58 16 7 C 0.52 13.37 7.73 87.24 0.67 14.05 16 8 O -0.52 -14.47 13.91 -3.33 -0.05 -14.52 16 9 C 0.50 14.70 7.89 87.24 0.69 15.39 16 10 O -0.54 -19.08 16.48 -3.27 -0.05 -19.13 16 11 N -0.68 -18.22 5.55 -464.49 -2.58 -20.80 16 12 C 0.13 4.07 5.56 86.38 0.48 4.55 16 13 C -0.12 -3.43 4.65 30.60 0.14 -3.29 16 14 C 0.18 6.33 2.02 45.00 0.09 6.42 16 15 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 16 N -0.73 -34.07 4.46 -322.92 -1.44 -35.51 16 17 C -0.21 -11.11 7.55 84.04 0.63 -10.48 16 18 H 0.08 3.86 7.39 -2.91 -0.02 3.83 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 20 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 21 Si 0.96 46.47 29.55 68.60 2.03 48.50 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 C -0.11 -3.36 2.69 -10.79 -0.03 -3.39 16 26 C -0.14 -3.22 8.85 71.98 0.64 -2.58 16 27 C -0.14 -4.83 8.25 71.98 0.59 -4.23 16 28 C -0.13 -2.14 9.97 22.40 0.22 -1.91 16 29 C -0.10 -1.37 9.69 22.25 0.22 -1.15 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.12 3.05 6.23 -2.91 -0.02 3.03 16 35 H 0.43 8.23 8.30 -92.70 -0.77 7.46 16 36 H 0.42 9.32 7.94 -92.71 -0.74 8.59 16 37 H 0.05 2.05 7.75 -2.38 -0.02 2.03 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 39 H 0.11 2.22 6.17 -2.39 -0.01 2.20 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.37 19.07 7.80 -92.71 -0.72 18.34 16 42 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.36 6.32 -2.38 -0.02 1.34 16 47 H 0.05 2.00 5.99 -2.39 -0.01 1.98 16 48 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 49 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -69.24 416.34 1.37 -67.87 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.26 Total: 42.30 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 6.07 Total: 5.68 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.36 Total: -130.69 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.10 Total: -33.65 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -69.24 1.37 -67.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277597581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.352 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds