Wall clock time and date at job start Wed Apr 1 2020 04:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38390 * 119.92758 * 2 1 4 4 C 1.38336 * 120.29314 * 180.22742 * 3 2 1 5 5 C 1.37985 * 120.14483 * 359.49230 * 4 3 2 6 6 C 1.50700 * 120.07457 * 180.25033 * 5 4 3 7 7 C 1.39559 * 119.84948 * 0.50690 * 5 4 3 8 8 C 1.47846 * 120.14038 * 179.76682 * 7 5 4 9 9 O 1.21550 * 120.00502 * 314.48351 * 8 7 5 10 10 N 1.34781 * 119.99679 * 134.48761 * 8 7 5 11 11 C 1.46493 * 119.99974 * 4.08003 * 10 8 7 12 12 C 1.46504 * 119.99893 * 184.08302 * 10 8 7 13 13 C 1.53005 * 109.46994 * 89.99789 * 12 10 8 14 14 H 1.08995 * 109.46997 * 65.00176 * 13 12 10 15 15 C 1.53001 * 109.46686 * 185.00310 * 13 12 10 16 16 N 1.46901 * 109.47131 * 305.00068 * 13 12 10 17 17 C 1.46892 * 111.00133 * 155.00121 * 16 13 12 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 13 19 19 O 1.21287 * 120.00025 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99923 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99613 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00218 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99707 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47047 * 60.00142 * 25 23 21 27 27 H 1.48496 * 109.47474 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47081 * 300.00144 * 25 23 21 29 29 C 1.37933 * 119.93168 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47044 * 90.00039 * 1 2 3 31 31 H 1.08993 * 109.47162 * 209.99942 * 1 2 3 32 32 H 1.08998 * 109.47373 * 329.99947 * 1 2 3 33 33 H 1.07996 * 119.85039 * 359.95284 * 3 2 1 34 34 H 1.07997 * 119.93064 * 179.74520 * 4 3 2 35 35 H 1.08995 * 109.47383 * 272.32946 * 6 5 4 36 36 H 1.08994 * 109.46847 * 32.33179 * 6 5 4 37 37 H 1.08998 * 109.46656 * 152.32673 * 6 5 4 38 38 H 1.09001 * 109.47006 * 84.76868 * 11 10 8 39 39 H 1.09001 * 109.46946 * 204.76479 * 11 10 8 40 40 H 1.09004 * 109.47334 * 324.76496 * 11 10 8 41 41 H 1.08994 * 109.46959 * 210.00046 * 12 10 8 42 42 H 1.09007 * 109.46750 * 329.99892 * 12 10 8 43 43 H 1.08995 * 109.47512 * 60.00181 * 15 13 12 44 44 H 1.09005 * 109.46699 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.46995 * 299.99288 * 15 13 12 46 46 H 1.00899 * 111.00217 * 31.04187 * 16 13 12 47 47 H 1.08997 * 109.47272 * 299.99899 * 17 16 13 48 48 H 1.09000 * 109.47198 * 59.99816 * 17 16 13 49 49 H 0.97002 * 120.00087 * 0.02562 * 20 18 17 50 50 H 0.96995 * 120.00431 * 180.02562 * 24 23 21 51 51 H 1.08003 * 120.07350 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 -0.0047 5 6 4.2812 0.0194 0.0011 6 6 5.7882 0.0309 0.0016 7 6 3.5911 -1.1936 0.0010 8 6 4.3353 -2.4711 0.0020 9 8 5.2791 -2.6253 -0.7482 10 7 3.9671 -3.4647 0.8349 11 6 2.7763 -3.3132 1.6746 12 6 4.7577 -4.6964 0.9004 13 6 5.8434 -4.5493 1.9685 14 1 5.3775 -4.4532 2.9492 15 6 6.7461 -5.7844 1.9514 16 7 6.6467 -3.3517 1.6884 17 6 7.2686 -2.8362 2.9153 18 6 8.0831 -1.6110 2.5891 19 8 8.1396 -1.2067 1.4470 20 7 8.7480 -0.9639 3.5668 21 6 9.4886 0.1511 3.2701 22 1 9.5389 0.5111 2.2531 23 6 10.1745 0.8179 4.2779 24 7 10.1138 0.3796 5.5152 25 14 11.1830 2.3375 3.8738 26 1 10.2980 3.3787 3.2925 27 1 11.8124 2.8581 5.1139 28 1 12.2408 1.9833 2.8935 29 6 2.1952 -1.1954 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6538 2.1325 -0.0008 34 1 4.1135 2.1475 -0.0089 35 1 6.1516 0.0707 -1.0252 36 1 6.1446 0.9045 0.5472 37 1 6.1582 -0.8742 0.4832 38 1 1.8916 -3.5987 1.1055 39 1 2.8664 -3.9539 2.5518 40 1 2.6849 -2.2742 1.9914 41 1 4.1071 -5.5326 1.1563 42 1 5.2232 -4.8812 -0.0678 43 1 7.2120 -5.8805 0.9707 44 1 7.5193 -5.6798 2.7126 45 1 6.1501 -6.6730 2.1593 46 1 6.0905 -2.6402 1.2385 47 1 6.4921 -2.5758 3.6345 48 1 7.9178 -3.6005 3.3424 49 1 8.7026 -1.2870 4.4803 50 1 10.5923 0.8453 6.2188 51 1 1.6552 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278001715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:56 Heat of formation + Delta-G solvation = -40.776171 kcal Electronic energy + Delta-G solvation = -32034.306960 eV Core-core repulsion = 27933.691993 eV Total energy + Delta-G solvation = -4100.614967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.76461 -38.90324 -38.10521 -36.60788 -35.04971 -33.82076 -33.70663 -31.67431 -31.14556 -30.54932 -29.15789 -27.56227 -26.45098 -26.19746 -24.74623 -23.96273 -23.23691 -21.44632 -20.33851 -19.35010 -18.96989 -17.84488 -17.20163 -16.65474 -16.43446 -15.73930 -15.63853 -15.33754 -15.07588 -14.64222 -14.39665 -14.24865 -14.00916 -13.78568 -13.67094 -13.37131 -13.29873 -12.93730 -12.81520 -12.73771 -12.61629 -12.46312 -12.34979 -11.98929 -11.79539 -11.73141 -11.62873 -11.49386 -11.38654 -11.34261 -11.23807 -11.04346 -11.00052 -10.76426 -10.40620 -10.15942 -9.72780 -9.41776 -8.96341 -8.76270 -8.47245 -8.28844 -7.93007 -7.86856 -6.36104 -3.76149 0.95717 1.29613 2.71134 2.90503 3.23337 3.28467 3.33181 3.68554 3.98304 4.15444 4.34496 4.44027 4.67076 4.72501 4.86903 4.89901 4.95345 5.07767 5.09886 5.19910 5.24749 5.29909 5.34451 5.36039 5.37163 5.46452 5.46883 5.51248 5.60666 5.76439 5.79545 5.80943 5.87161 5.96075 6.04181 6.05970 6.10680 6.23812 6.27302 6.28205 6.37138 6.41260 6.48206 6.64601 6.80384 7.00797 7.23520 7.39176 7.60385 7.87581 8.12592 8.17358 8.68959 9.24349 9.61302 10.13905 10.81893 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003658 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.743180 B = 7651.937665 C = 9762.221598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.095 4.095 4 C -0.125 4.125 5 C -0.024 4.024 6 C -0.124 4.124 7 C -0.134 4.134 8 C 0.553 3.447 9 O -0.497 6.497 10 N -0.622 5.622 11 C 0.075 3.925 12 C 0.112 3.888 13 C 0.065 3.935 14 H 0.040 0.960 15 C -0.137 4.137 16 N -0.659 5.659 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.570 6.570 20 N -0.566 5.566 21 C -0.295 4.295 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.089 4.089 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.351 0.649 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.803 -6.892 -5.158 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.113 4.113 4 C -0.143 4.143 5 C -0.025 4.025 6 C -0.180 4.180 7 C -0.137 4.137 8 C 0.342 3.658 9 O -0.371 6.371 10 N -0.357 5.357 11 C -0.068 4.068 12 C -0.011 4.011 13 C -0.046 4.046 14 H 0.058 0.942 15 C -0.196 4.196 16 N -0.298 5.298 17 C -0.086 4.086 18 C 0.226 3.774 19 O -0.453 6.453 20 N -0.203 5.203 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.199 1.199 29 C -0.108 4.108 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.177 0.823 47 H 0.054 0.946 48 H 0.103 0.897 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.618 -6.966 -6.382 21.774 hybrid contribution -0.308 0.979 1.159 1.549 sum -19.925 -5.987 -5.222 21.451 Atomic orbital electron populations 1.20738 0.90986 1.02690 1.02212 1.19751 0.96051 0.92877 1.02336 1.21186 0.94167 0.97522 0.98435 1.21088 0.93972 0.97882 1.01336 1.20267 0.97584 0.91253 0.93382 1.21060 0.88254 1.05451 1.03231 1.19746 0.93659 0.93076 1.07268 1.18450 0.83647 0.83375 0.80321 1.90901 1.27169 1.80587 1.38413 1.47846 1.28461 1.17309 1.42074 1.22008 0.86880 1.03301 0.94626 1.21784 0.92533 0.85305 1.01467 1.21944 0.92908 0.93075 0.96696 0.94214 1.21739 0.99387 0.95253 1.03184 1.60241 1.36997 1.08685 1.23855 1.21759 0.97878 0.97305 0.91616 1.19817 0.84963 0.86231 0.86402 1.90521 1.66070 1.68444 1.20253 1.41846 1.43378 1.25813 1.09267 1.19643 1.23850 1.02804 0.96205 0.87974 1.25232 0.98369 0.99592 0.94799 1.69604 1.43642 1.41221 1.00122 0.85951 0.79796 0.81166 0.77497 1.19981 1.21056 1.19921 1.21215 0.92495 0.98083 0.98965 0.91352 0.91671 0.91537 0.85855 0.85243 0.90588 0.91408 0.88500 0.92416 0.90933 0.90638 0.89879 0.88626 0.91599 0.92264 0.92870 0.82349 0.94608 0.89746 0.77629 0.91946 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.11 -1.12 5.87 -104.68 -0.61 -1.73 16 3 C -0.09 -1.03 9.69 -39.49 -0.38 -1.41 16 4 C -0.12 -1.64 9.70 -39.64 -0.38 -2.02 16 5 C -0.02 -0.38 5.91 -104.22 -0.62 -0.99 16 6 C -0.12 -2.33 8.81 36.01 0.32 -2.01 16 7 C -0.13 -1.96 5.01 -104.97 -0.53 -2.48 16 8 C 0.55 8.77 4.87 -12.33 -0.06 8.71 16 9 O -0.50 -9.76 13.88 5.32 0.07 -9.68 16 10 N -0.62 -7.75 2.66 -182.69 -0.49 -8.24 16 11 C 0.07 0.65 9.00 59.84 0.54 1.19 16 12 C 0.11 1.33 5.19 -4.04 -0.02 1.31 16 13 C 0.07 0.88 2.95 -67.71 -0.20 0.69 16 14 H 0.04 0.51 7.80 -51.93 -0.41 0.10 16 15 C -0.14 -1.65 9.41 37.16 0.35 -1.30 16 16 N -0.66 -12.14 5.87 -108.00 -0.63 -12.77 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.76 7.82 -10.98 -0.09 10.67 16 19 O -0.57 -15.52 13.64 5.55 0.08 -15.45 16 20 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 C -0.09 -1.00 7.36 -39.19 -0.29 -1.29 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 37 H 0.10 2.10 3.05 -51.93 -0.16 1.94 16 38 H 0.06 0.38 6.93 -51.93 -0.36 0.02 16 39 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 40 H 0.07 0.72 6.19 -51.93 -0.32 0.40 16 41 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 42 H 0.10 1.31 7.37 -51.93 -0.38 0.93 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.35 6.89 2.80 -39.29 -0.11 6.78 16 47 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 48 H 0.08 1.50 7.44 -51.93 -0.39 1.12 16 49 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 50 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.13 1.13 5.95 -52.48 -0.31 0.81 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -33.85 403.45 -8.84 -42.69 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -7.71 Total: 18.10 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.88 Total: 1.81 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.45 Total: -59.92 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.15 Total: -25.13 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.85 -8.84 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278001715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.911 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds