Wall clock time and date at job start Wed Apr 1 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38390 * 119.92758 * 2 1 4 4 C 1.38336 * 120.29314 * 180.22742 * 3 2 1 5 5 C 1.37985 * 120.14483 * 359.49230 * 4 3 2 6 6 C 1.50700 * 120.07457 * 180.25033 * 5 4 3 7 7 C 1.39559 * 119.84948 * 0.50690 * 5 4 3 8 8 C 1.47846 * 120.14038 * 179.76682 * 7 5 4 9 9 O 1.21550 * 120.00502 * 314.48351 * 8 7 5 10 10 N 1.34781 * 119.99679 * 134.48761 * 8 7 5 11 11 C 1.46493 * 119.99974 * 4.08003 * 10 8 7 12 12 C 1.46504 * 119.99893 * 184.08302 * 10 8 7 13 13 C 1.53005 * 109.46994 * 89.99789 * 12 10 8 14 14 H 1.08995 * 109.46997 * 65.00176 * 13 12 10 15 15 C 1.53001 * 109.46686 * 185.00310 * 13 12 10 16 16 N 1.46901 * 109.47131 * 305.00068 * 13 12 10 17 17 C 1.46892 * 111.00133 * 155.00121 * 16 13 12 18 18 C 1.50700 * 109.47363 * 179.97438 * 17 16 13 19 19 O 1.21287 * 120.00025 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99923 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99613 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00218 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99707 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47047 * 60.00142 * 25 23 21 27 27 H 1.48496 * 109.47474 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47081 * 300.00144 * 25 23 21 29 29 C 1.37933 * 119.93168 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47044 * 90.00039 * 1 2 3 31 31 H 1.08993 * 109.47162 * 209.99942 * 1 2 3 32 32 H 1.08998 * 109.47373 * 329.99947 * 1 2 3 33 33 H 1.07996 * 119.85039 * 359.95284 * 3 2 1 34 34 H 1.07997 * 119.93064 * 179.74520 * 4 3 2 35 35 H 1.08995 * 109.47383 * 272.32946 * 6 5 4 36 36 H 1.08994 * 109.46847 * 32.33179 * 6 5 4 37 37 H 1.08998 * 109.46656 * 152.32673 * 6 5 4 38 38 H 1.09001 * 109.47006 * 84.76868 * 11 10 8 39 39 H 1.09001 * 109.46946 * 204.76479 * 11 10 8 40 40 H 1.09004 * 109.47334 * 324.76496 * 11 10 8 41 41 H 1.08994 * 109.46959 * 210.00046 * 12 10 8 42 42 H 1.09007 * 109.46750 * 329.99892 * 12 10 8 43 43 H 1.08995 * 109.47512 * 60.00181 * 15 13 12 44 44 H 1.09005 * 109.46699 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.46995 * 299.99288 * 15 13 12 46 46 H 1.00899 * 111.00217 * 31.04187 * 16 13 12 47 47 H 1.08997 * 109.47272 * 299.99899 * 17 16 13 48 48 H 1.09000 * 109.47198 * 59.99816 * 17 16 13 49 49 H 0.97002 * 120.00087 * 0.02562 * 20 18 17 50 50 H 0.96995 * 120.00431 * 180.02562 * 24 23 21 51 51 H 1.08003 * 120.07350 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 -0.0047 5 6 4.2812 0.0194 0.0011 6 6 5.7882 0.0309 0.0016 7 6 3.5911 -1.1936 0.0010 8 6 4.3353 -2.4711 0.0020 9 8 5.2791 -2.6253 -0.7482 10 7 3.9671 -3.4647 0.8349 11 6 2.7763 -3.3132 1.6746 12 6 4.7577 -4.6964 0.9004 13 6 5.8434 -4.5493 1.9685 14 1 5.3775 -4.4532 2.9492 15 6 6.7461 -5.7844 1.9514 16 7 6.6467 -3.3517 1.6884 17 6 7.2686 -2.8362 2.9153 18 6 8.0831 -1.6110 2.5891 19 8 8.1396 -1.2067 1.4470 20 7 8.7480 -0.9639 3.5668 21 6 9.4886 0.1511 3.2701 22 1 9.5389 0.5111 2.2531 23 6 10.1745 0.8179 4.2779 24 7 10.1138 0.3796 5.5152 25 14 11.1830 2.3375 3.8738 26 1 10.2980 3.3787 3.2925 27 1 11.8124 2.8581 5.1139 28 1 12.2408 1.9833 2.8935 29 6 2.1952 -1.1954 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6538 2.1325 -0.0008 34 1 4.1135 2.1475 -0.0089 35 1 6.1516 0.0707 -1.0252 36 1 6.1446 0.9045 0.5472 37 1 6.1582 -0.8742 0.4832 38 1 1.8916 -3.5987 1.1055 39 1 2.8664 -3.9539 2.5518 40 1 2.6849 -2.2742 1.9914 41 1 4.1071 -5.5326 1.1563 42 1 5.2232 -4.8812 -0.0678 43 1 7.2120 -5.8805 0.9707 44 1 7.5193 -5.6798 2.7126 45 1 6.1501 -6.6730 2.1593 46 1 6.0905 -2.6402 1.2385 47 1 6.4921 -2.5758 3.6345 48 1 7.9178 -3.6005 3.3424 49 1 8.7026 -1.2870 4.4803 50 1 10.5923 0.8453 6.2188 51 1 1.6552 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278001715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:52 Heat of formation + Delta-G solvation = -63.977404 kcal Electronic energy + Delta-G solvation = -32035.313041 eV Core-core repulsion = 27933.691993 eV Total energy + Delta-G solvation = -4101.621048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.82990 -40.20651 -39.70238 -37.85304 -36.29853 -35.78358 -34.69921 -33.30205 -32.72487 -31.70831 -30.15590 -28.42503 -27.99754 -27.32205 -25.81701 -25.69523 -24.22171 -22.47957 -21.41142 -21.13826 -20.11937 -19.89056 -18.21565 -18.08171 -17.56902 -17.17947 -16.70681 -16.53690 -16.46136 -16.19505 -15.92166 -15.60517 -15.31900 -14.99598 -14.69958 -14.69752 -14.31649 -14.17800 -14.07532 -13.78638 -13.69203 -13.50219 -13.44350 -13.31616 -13.14945 -13.01104 -12.89175 -12.73611 -12.60483 -12.55169 -12.49374 -12.42774 -12.32493 -12.13296 -11.96543 -11.95052 -11.47589 -10.88288 -10.28566 -9.99594 -9.92502 -9.73260 -9.43924 -9.29908 -8.46433 -5.94271 -0.03182 0.33787 1.37476 1.38878 1.49925 1.61693 1.95790 2.05112 2.27965 2.70779 2.93862 3.20146 3.43973 3.49371 3.81372 3.83975 3.88112 4.02619 4.16577 4.21071 4.24597 4.25522 4.36316 4.39615 4.45957 4.49513 4.54030 4.59487 4.64413 4.69690 4.70256 4.82580 4.86049 4.87580 4.92396 4.93523 5.00704 5.06076 5.22372 5.30203 5.34411 5.37652 5.41564 5.53566 5.56321 5.57703 5.92179 5.96113 6.14532 6.24502 6.47340 6.61810 7.07867 7.13505 7.56131 8.13086 8.71143 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003658 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.743180 B = 7651.937665 C = 9762.221598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.092 4.092 4 C -0.135 4.135 5 C -0.060 4.060 6 C -0.112 4.112 7 C -0.149 4.149 8 C 0.546 3.454 9 O -0.553 6.553 10 N -0.615 5.615 11 C 0.066 3.934 12 C 0.113 3.887 13 C 0.061 3.939 14 H 0.059 0.941 15 C -0.133 4.133 16 N -0.685 5.685 17 C 0.061 3.939 18 C 0.434 3.566 19 O -0.603 6.603 20 N -0.573 5.573 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.274 1.274 29 C -0.082 4.082 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.344 0.656 47 H 0.054 0.946 48 H 0.101 0.899 49 H 0.394 0.606 50 H 0.277 0.723 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.489 -7.746 -3.870 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.110 4.110 4 C -0.153 4.153 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.152 4.152 8 C 0.335 3.665 9 O -0.431 6.431 10 N -0.349 5.349 11 C -0.075 4.075 12 C -0.010 4.010 13 C -0.049 4.049 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.323 5.323 17 C -0.071 4.071 18 C 0.221 3.779 19 O -0.488 6.488 20 N -0.211 5.211 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.200 1.200 29 C -0.100 4.100 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.168 0.832 47 H 0.072 0.928 48 H 0.119 0.881 49 H 0.228 0.772 50 H 0.087 0.913 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.346 -7.861 -5.042 25.145 hybrid contribution 0.740 1.199 0.752 1.597 sum -22.607 -6.662 -4.290 23.955 Atomic orbital electron populations 1.20835 0.87841 1.04348 1.03425 1.20242 0.98144 0.91981 0.99566 1.21552 0.92991 0.99433 0.97000 1.21204 0.95417 0.97008 1.01632 1.20089 0.95517 0.93281 0.97186 1.20786 0.91584 1.03077 1.01420 1.19800 0.95201 0.91909 1.08299 1.18791 0.83079 0.84350 0.80232 1.90862 1.29556 1.81618 1.41030 1.47946 1.29153 1.16530 1.41235 1.22314 0.86248 1.03546 0.95404 1.21883 0.92904 0.86459 0.99729 1.22162 0.93283 0.91361 0.98120 0.92340 1.21726 0.99428 0.96084 1.01852 1.60274 1.38654 1.09945 1.23460 1.21611 0.97871 0.95030 0.92616 1.20810 0.84339 0.87133 0.85606 1.90512 1.66937 1.69613 1.21738 1.41883 1.43802 1.25738 1.09678 1.19594 1.26016 1.04633 0.95639 0.90506 1.25996 0.98724 1.01999 0.94488 1.69665 1.43829 1.42134 1.00626 0.85036 0.78168 0.77614 0.77798 1.19688 1.19263 1.19960 1.21502 0.90854 0.99943 0.97734 0.90164 0.89863 0.90171 0.82768 0.85039 0.92481 0.93218 0.91188 0.89300 0.88562 0.91507 0.85067 0.91165 0.93431 0.93162 0.89033 0.83182 0.92774 0.88061 0.77229 0.91344 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.23 0.71 -0.26 16 2 C -0.10 -1.70 5.87 -19.90 -0.12 -1.82 16 3 C -0.09 -1.80 9.69 22.33 0.22 -1.58 16 4 C -0.13 -3.62 9.70 22.23 0.22 -3.41 16 5 C -0.06 -2.01 5.91 -19.61 -0.12 -2.13 16 6 C -0.11 -4.73 8.81 71.24 0.63 -4.10 16 7 C -0.15 -4.41 5.01 -20.09 -0.10 -4.51 16 8 C 0.55 17.81 4.87 86.79 0.42 18.24 16 9 O -0.55 -23.38 13.88 -3.87 -0.05 -23.43 16 10 N -0.62 -14.53 2.66 -850.18 -2.26 -16.79 16 11 C 0.07 0.93 9.00 127.77 1.15 2.08 16 12 C 0.11 2.48 5.19 86.38 0.45 2.93 16 13 C 0.06 1.57 2.95 44.92 0.13 1.70 16 14 H 0.06 1.31 7.80 -2.39 -0.02 1.29 16 15 C -0.13 -2.98 9.41 71.98 0.68 -2.30 16 16 N -0.68 -25.88 5.87 -495.59 -2.91 -28.79 16 17 C 0.06 2.40 5.96 85.56 0.51 2.91 16 18 C 0.43 22.29 7.82 87.66 0.69 22.98 16 19 O -0.60 -35.32 13.64 -3.05 -0.04 -35.36 16 20 N -0.57 -30.94 5.29 -306.99 -1.62 -32.57 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -51.08 13.05 21.66 0.28 -50.80 16 25 Si 0.99 44.45 29.55 68.60 2.03 46.48 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 29 C -0.08 -1.65 7.36 22.52 0.17 -1.49 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 37 H 0.07 3.35 3.05 -2.39 -0.01 3.35 16 38 H 0.09 0.72 6.93 -2.39 -0.02 0.70 16 39 H 0.10 0.92 8.03 -2.39 -0.02 0.90 16 40 H 0.07 1.09 6.19 -2.38 -0.01 1.08 16 41 H 0.13 1.62 8.07 -2.39 -0.02 1.60 16 42 H 0.07 1.94 7.37 -2.38 -0.02 1.93 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.21 7.45 -2.38 -0.02 1.19 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.34 14.18 2.80 -89.69 -0.25 13.93 16 47 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 48 H 0.10 3.60 7.44 -2.39 -0.02 3.58 16 49 H 0.39 20.27 7.90 -92.71 -0.73 19.54 16 50 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 51 H 0.16 2.14 5.95 -2.91 -0.02 2.12 16 Total: -1.00 -81.05 403.45 2.31 -78.74 By element: Atomic # 1 Polarization: 52.12 SS G_CDS: -0.02 Total: 52.10 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.91 Total: 10.41 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.51 Total: -128.94 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -0.10 Total: -58.79 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -81.05 2.31 -78.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278001715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.766 kcal (2) G-P(sol) polarization free energy of solvation -81.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds