Wall clock time and date at job start Wed Apr 1 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.46270 * 2 1 4 4 C 1.38355 * 119.30673 * 180.02562 * 3 2 1 5 5 C 1.40026 * 118.28347 * 359.75013 * 4 3 2 6 6 C 1.47842 * 120.55793 * 180.24452 * 5 4 3 7 7 O 1.21549 * 120.00125 * 186.09379 * 6 5 4 8 8 N 1.34780 * 120.00063 * 6.09928 * 6 5 4 9 9 C 1.46494 * 120.00204 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47131 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.63818 * 66.69120 * 10 9 8 12 12 C 1.55154 * 110.72073 * 190.02254 * 10 9 8 13 13 C 1.54912 * 101.58096 * 153.86502 * 12 10 9 14 14 N 1.47421 * 104.83053 * 322.99452 * 13 12 10 15 15 C 1.36937 * 125.64503 * 204.16075 * 14 13 12 16 16 H 1.08001 * 120.00128 * 179.97438 * 15 14 13 17 17 C 1.38817 * 120.00172 * 359.95933 * 15 14 13 18 18 N 1.31621 * 119.99703 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46820 * 60.00539 * 19 17 15 21 21 H 1.48503 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47763 * 300.00467 * 19 17 15 23 23 C 1.47015 * 108.70666 * 24.12775 * 14 13 12 24 24 C 1.39518 * 118.88646 * 0.50837 * 5 4 3 25 25 C 1.50693 * 119.72070 * 179.75698 * 24 5 4 26 26 C 1.53001 * 109.47047 * 273.38682 * 25 24 5 27 27 C 1.52997 * 109.47430 * 153.38804 * 25 24 5 28 28 N 1.31695 * 120.56457 * 359.48290 * 24 5 4 29 29 H 1.08994 * 109.47520 * 269.98371 * 1 2 3 30 30 H 1.09006 * 109.46894 * 29.98022 * 1 2 3 31 31 H 1.09004 * 109.47294 * 149.97986 * 1 2 3 32 32 H 1.08001 * 120.34612 * 359.97402 * 3 2 1 33 33 H 1.07997 * 120.85759 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99391 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47475 * 300.00263 * 9 8 6 36 36 H 1.09001 * 109.46938 * 60.00289 * 9 8 6 37 37 H 0.96697 * 114.00390 * 300.69693 * 11 10 9 38 38 H 1.08997 * 111.00652 * 271.94352 * 12 10 9 39 39 H 1.09001 * 111.00122 * 35.79561 * 12 10 9 40 40 H 1.09005 * 110.36328 * 204.15308 * 13 12 10 41 41 H 1.09005 * 110.36353 * 81.83299 * 13 12 10 42 42 H 0.97003 * 119.99433 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.88175 * 239.52429 * 23 14 13 44 44 H 1.09001 * 109.88702 * 118.35711 * 23 14 13 45 45 H 1.09000 * 109.47301 * 33.38021 * 25 24 5 46 46 H 1.09004 * 109.46973 * 299.99662 * 26 25 24 47 47 H 1.08997 * 109.47611 * 59.99760 * 26 25 24 48 48 H 1.09005 * 109.47318 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47259 * 180.02562 * 27 25 24 50 50 H 1.09007 * 109.47105 * 299.99893 * 27 25 24 51 51 H 1.09004 * 109.47418 * 59.99830 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.2311 -0.0340 0.0043 6 6 5.7082 -0.0967 0.0094 7 8 6.2714 -1.1684 -0.0982 8 7 6.4303 1.0346 0.1334 9 6 7.8939 0.9724 0.1391 10 6 8.4638 2.3843 0.2905 11 8 8.1502 2.9186 1.5782 12 6 9.9965 2.3865 0.0494 13 6 10.2345 3.8416 -0.4258 14 7 9.0533 4.1690 -1.2449 15 6 9.0045 5.1171 -2.2318 16 1 8.0871 5.2819 -2.7773 17 6 10.1340 5.8665 -2.5308 18 7 11.2521 5.6654 -1.8661 19 14 10.0676 7.1593 -3.8775 20 1 9.0417 8.1773 -3.5362 21 1 11.3941 7.8157 -3.9995 22 1 9.7139 6.5132 -5.1670 23 6 7.9367 3.3086 -0.8273 24 6 3.4716 -1.2043 -0.0014 25 6 4.1626 -2.5435 -0.0019 26 6 4.4778 -2.9542 -1.4416 27 6 3.2480 -3.5896 0.6383 28 7 2.1558 -1.1487 -0.0009 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6443 2.1381 -0.0004 33 1 4.1275 2.1265 -0.0010 34 1 5.9808 1.8898 0.2197 35 1 8.2282 0.3540 0.9721 36 1 8.2428 0.5389 -0.7982 37 1 7.2022 2.9745 1.7607 38 1 10.5376 2.1838 0.9736 39 1 10.2708 1.6722 -0.7268 40 1 11.1416 3.9005 -1.0274 41 1 10.3012 4.5139 0.4297 42 1 12.0413 6.1894 -2.0749 43 1 7.5935 2.7108 -1.6716 44 1 7.1189 3.9209 -0.4471 45 1 5.0896 -2.4742 0.5673 46 1 3.5508 -3.0235 -2.0109 47 1 5.1294 -2.2090 -1.8978 48 1 4.9781 -3.9227 -1.4420 49 1 3.7480 -4.5582 0.6383 50 1 3.0235 -3.2970 1.6641 51 1 2.3210 -3.6589 0.0691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278795433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:21 Heat of formation + Delta-G solvation = -26.848444 kcal Electronic energy + Delta-G solvation = -31205.845081 eV Core-core repulsion = 27105.834065 eV Total energy + Delta-G solvation = -4100.011016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19900 -39.57099 -38.41336 -35.95447 -35.12403 -34.30550 -33.26690 -32.09363 -31.65693 -29.71642 -28.75256 -27.84818 -27.08086 -25.82533 -24.39296 -23.59932 -22.98077 -21.04698 -20.61500 -20.09987 -19.94071 -18.30653 -17.09177 -16.89465 -16.26399 -16.06071 -15.57552 -15.49436 -14.94798 -14.79575 -14.70472 -14.36813 -14.22211 -14.13014 -13.86351 -13.44159 -13.34800 -13.05731 -12.95882 -12.84606 -12.58211 -12.47171 -12.29626 -12.14659 -12.09753 -11.63306 -11.44490 -11.19632 -11.13229 -11.04348 -10.90306 -10.80925 -10.38709 -10.21488 -10.17509 -10.05666 -9.96960 -9.76672 -9.56735 -9.40593 -9.28184 -8.97793 -8.69527 -6.91306 -5.70873 -3.13615 0.38377 0.91196 2.68086 2.96374 3.36534 3.40669 3.42346 3.52610 3.83570 4.27736 4.32302 4.39205 4.41902 4.46296 4.67911 4.80896 5.00408 5.02246 5.08569 5.12612 5.16320 5.21439 5.23265 5.33249 5.44177 5.54236 5.57776 5.58188 5.63558 5.69033 5.71483 5.81869 5.82605 5.91704 5.93864 6.01703 6.14123 6.18563 6.27766 6.31940 6.34032 6.44418 6.46598 6.53702 6.57446 7.28570 7.50940 7.55647 7.67392 7.79343 7.87158 8.04621 8.29575 9.15298 9.75703 10.39765 11.32761 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002505 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.656406 B =11174.260684 C =12069.195296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.153 3.847 3 C -0.187 4.187 4 C -0.036 4.036 5 C -0.196 4.196 6 C 0.563 3.437 7 O -0.524 6.524 8 N -0.721 5.721 9 C 0.105 3.895 10 C 0.104 3.896 11 O -0.543 6.543 12 C -0.128 4.128 13 C 0.156 3.844 14 N -0.599 5.599 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.116 3.884 24 C 0.203 3.797 25 C -0.058 4.058 26 C -0.127 4.127 27 C -0.136 4.136 28 N -0.484 5.484 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.364 0.636 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.031 0.969 44 H 0.021 0.979 45 H 0.119 0.881 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.048 0.952 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.679 -13.398 6.012 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.015 3.985 3 C -0.207 4.207 4 C -0.062 4.062 5 C -0.201 4.201 6 C 0.350 3.650 7 O -0.402 6.402 8 N -0.373 5.373 9 C -0.019 4.019 10 C 0.063 3.937 11 O -0.347 6.347 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.325 5.325 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.746 3.254 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.011 4.011 24 C 0.064 3.936 25 C -0.077 4.077 26 C -0.185 4.185 27 C -0.194 4.194 28 N -0.194 5.194 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.232 0.768 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.210 0.790 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.136 0.864 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.917 -14.724 5.866 23.922 hybrid contribution -0.516 2.180 -0.658 2.335 sum -18.433 -12.544 5.208 22.896 Atomic orbital electron populations 1.20783 0.88487 1.03797 1.03367 1.21555 0.97276 0.88285 0.91402 1.21898 0.94476 0.99623 1.04673 1.21784 0.94827 0.97256 0.92315 1.20761 0.94480 0.94916 1.09929 1.17968 0.86206 0.84150 0.76718 1.90712 1.72213 1.27898 1.49357 1.45935 1.07763 1.09185 1.74455 1.22139 0.78191 0.98190 1.03335 1.22577 0.98116 0.89548 0.83471 1.86636 1.27879 1.86180 1.33976 1.23057 0.90473 1.02304 1.00829 1.21952 0.93405 0.87487 0.94037 1.44393 1.06437 1.41452 1.40216 1.19000 0.96806 1.10551 1.09230 0.90604 1.24801 0.95838 0.99995 0.99811 1.69781 1.01308 1.42887 1.42835 0.86137 0.76764 0.81144 0.81334 1.21201 1.21471 1.21102 1.21914 0.92383 0.92472 0.94303 1.21473 0.88495 0.94873 0.88732 1.20537 0.99166 0.88710 0.99276 1.21624 1.00885 1.01681 0.94316 1.21729 0.99740 0.97594 1.00323 1.67452 1.08968 1.28763 1.14207 0.90014 0.90385 0.90196 0.84122 0.84307 0.76783 0.90420 0.90022 0.79037 0.91005 0.90520 0.87383 0.96356 0.93533 0.95171 0.96104 0.86386 0.93351 0.92125 0.92005 0.92729 0.93263 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.00 0.37 -0.28 16 2 C 0.15 1.41 6.78 -82.51 -0.56 0.85 16 3 C -0.19 -1.56 9.72 -39.49 -0.38 -1.94 16 4 C -0.04 -0.33 9.63 -38.87 -0.37 -0.71 16 5 C -0.20 -2.28 5.89 -104.82 -0.62 -2.90 16 6 C 0.56 7.34 7.71 -12.33 -0.10 7.25 16 7 O -0.52 -7.96 12.03 5.32 0.06 -7.90 16 8 N -0.72 -8.66 5.09 -61.25 -0.31 -8.97 16 9 C 0.11 1.47 4.80 -4.04 -0.02 1.45 16 10 C 0.10 1.72 0.93 -88.79 -0.08 1.64 16 11 O -0.54 -8.70 13.10 -35.23 -0.46 -9.16 16 12 C -0.13 -2.39 6.26 -24.58 -0.15 -2.54 16 13 C 0.16 3.76 5.88 -2.53 -0.01 3.75 16 14 N -0.60 -14.99 3.39 -170.07 -0.58 -15.56 16 15 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 19 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.12 2.26 5.76 -3.07 -0.02 2.24 16 24 C 0.20 2.45 5.81 -82.18 -0.48 1.97 16 25 C -0.06 -0.68 2.37 -91.78 -0.22 -0.90 16 26 C -0.13 -1.45 8.80 37.16 0.33 -1.12 16 27 C -0.14 -1.37 8.69 37.16 0.32 -1.04 16 28 N -0.48 -5.49 9.05 -5.42 -0.05 -5.54 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.14 1.00 6.57 -52.49 -0.34 0.65 16 34 H 0.40 4.00 5.62 -40.82 -0.23 3.77 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 37 H 0.36 4.28 8.44 45.56 0.38 4.66 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.36 7.96 -51.93 -0.41 0.94 16 40 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 43 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 44 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 45 H 0.12 1.55 5.60 -51.93 -0.29 1.26 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.79 7.13 -51.93 -0.37 0.42 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -32.79 403.02 -9.38 -42.18 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.41 Total: 7.14 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.25 Total: 0.99 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.38 Total: -56.06 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.40 Total: -17.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.79 -9.38 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278795433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.328 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds