Wall clock time and date at job start Wed Apr 1 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.46270 * 2 1 4 4 C 1.38355 * 119.30673 * 180.02562 * 3 2 1 5 5 C 1.40026 * 118.28347 * 359.75013 * 4 3 2 6 6 C 1.47842 * 120.55793 * 180.24452 * 5 4 3 7 7 O 1.21549 * 120.00125 * 186.09379 * 6 5 4 8 8 N 1.34780 * 120.00063 * 6.09928 * 6 5 4 9 9 C 1.46494 * 120.00204 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47131 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.63818 * 66.69120 * 10 9 8 12 12 C 1.55154 * 110.72073 * 190.02254 * 10 9 8 13 13 C 1.54912 * 101.58096 * 153.86502 * 12 10 9 14 14 N 1.47421 * 104.83053 * 322.99452 * 13 12 10 15 15 C 1.36937 * 125.64503 * 204.16075 * 14 13 12 16 16 H 1.08001 * 120.00128 * 179.97438 * 15 14 13 17 17 C 1.38817 * 120.00172 * 359.95933 * 15 14 13 18 18 N 1.31621 * 119.99703 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46820 * 60.00539 * 19 17 15 21 21 H 1.48503 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47763 * 300.00467 * 19 17 15 23 23 C 1.47015 * 108.70666 * 24.12775 * 14 13 12 24 24 C 1.39518 * 118.88646 * 0.50837 * 5 4 3 25 25 C 1.50693 * 119.72070 * 179.75698 * 24 5 4 26 26 C 1.53001 * 109.47047 * 273.38682 * 25 24 5 27 27 C 1.52997 * 109.47430 * 153.38804 * 25 24 5 28 28 N 1.31695 * 120.56457 * 359.48290 * 24 5 4 29 29 H 1.08994 * 109.47520 * 269.98371 * 1 2 3 30 30 H 1.09006 * 109.46894 * 29.98022 * 1 2 3 31 31 H 1.09004 * 109.47294 * 149.97986 * 1 2 3 32 32 H 1.08001 * 120.34612 * 359.97402 * 3 2 1 33 33 H 1.07997 * 120.85759 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99391 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47475 * 300.00263 * 9 8 6 36 36 H 1.09001 * 109.46938 * 60.00289 * 9 8 6 37 37 H 0.96697 * 114.00390 * 300.69693 * 11 10 9 38 38 H 1.08997 * 111.00652 * 271.94352 * 12 10 9 39 39 H 1.09001 * 111.00122 * 35.79561 * 12 10 9 40 40 H 1.09005 * 110.36328 * 204.15308 * 13 12 10 41 41 H 1.09005 * 110.36353 * 81.83299 * 13 12 10 42 42 H 0.97003 * 119.99433 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.88175 * 239.52429 * 23 14 13 44 44 H 1.09001 * 109.88702 * 118.35711 * 23 14 13 45 45 H 1.09000 * 109.47301 * 33.38021 * 25 24 5 46 46 H 1.09004 * 109.46973 * 299.99662 * 26 25 24 47 47 H 1.08997 * 109.47611 * 59.99760 * 26 25 24 48 48 H 1.09005 * 109.47318 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47259 * 180.02562 * 27 25 24 50 50 H 1.09007 * 109.47105 * 299.99893 * 27 25 24 51 51 H 1.09004 * 109.47418 * 59.99830 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.2311 -0.0340 0.0043 6 6 5.7082 -0.0967 0.0094 7 8 6.2714 -1.1684 -0.0982 8 7 6.4303 1.0346 0.1334 9 6 7.8939 0.9724 0.1391 10 6 8.4638 2.3843 0.2905 11 8 8.1502 2.9186 1.5782 12 6 9.9965 2.3865 0.0494 13 6 10.2345 3.8416 -0.4258 14 7 9.0533 4.1690 -1.2449 15 6 9.0045 5.1171 -2.2318 16 1 8.0871 5.2819 -2.7773 17 6 10.1340 5.8665 -2.5308 18 7 11.2521 5.6654 -1.8661 19 14 10.0676 7.1593 -3.8775 20 1 9.0417 8.1773 -3.5362 21 1 11.3941 7.8157 -3.9995 22 1 9.7139 6.5132 -5.1670 23 6 7.9367 3.3086 -0.8273 24 6 3.4716 -1.2043 -0.0014 25 6 4.1626 -2.5435 -0.0019 26 6 4.4778 -2.9542 -1.4416 27 6 3.2480 -3.5896 0.6383 28 7 2.1558 -1.1487 -0.0009 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6443 2.1381 -0.0004 33 1 4.1275 2.1265 -0.0010 34 1 5.9808 1.8898 0.2197 35 1 8.2282 0.3540 0.9721 36 1 8.2428 0.5389 -0.7982 37 1 7.2022 2.9745 1.7607 38 1 10.5376 2.1838 0.9736 39 1 10.2708 1.6722 -0.7268 40 1 11.1416 3.9005 -1.0274 41 1 10.3012 4.5139 0.4297 42 1 12.0413 6.1894 -2.0749 43 1 7.5935 2.7108 -1.6716 44 1 7.1189 3.9209 -0.4471 45 1 5.0896 -2.4742 0.5673 46 1 3.5508 -3.0235 -2.0109 47 1 5.1294 -2.2090 -1.8978 48 1 4.9781 -3.9227 -1.4420 49 1 3.7480 -4.5582 0.6383 50 1 3.0235 -3.2970 1.6641 51 1 2.3210 -3.6589 0.0691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278795433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:20 Heat of formation + Delta-G solvation = -49.555368 kcal Electronic energy + Delta-G solvation = -31206.829727 eV Core-core repulsion = 27105.834065 eV Total energy + Delta-G solvation = -4100.995662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03868 -40.71141 -39.65439 -36.99678 -36.56137 -35.35500 -34.18733 -33.82343 -32.37420 -31.38859 -29.96198 -28.86882 -27.95621 -27.44376 -25.66366 -24.67750 -23.87260 -22.40558 -21.60910 -21.46459 -21.23282 -19.34160 -18.87202 -17.90297 -17.50080 -16.89755 -16.75816 -16.56356 -16.43166 -15.96129 -15.73287 -15.55924 -15.42275 -15.12164 -14.98203 -14.78273 -14.56392 -14.14768 -13.97369 -13.79498 -13.61048 -13.52521 -13.29589 -13.17425 -13.02424 -12.95045 -12.88233 -12.73978 -12.39756 -12.25563 -12.10789 -12.06506 -12.04645 -12.00219 -11.74882 -11.56093 -10.98033 -10.93255 -10.84167 -10.73997 -10.35895 -10.25454 -9.79215 -8.91662 -7.78394 -5.23482 -0.39528 0.19203 1.46606 1.49571 1.56051 1.77061 1.95953 2.48365 2.73657 3.12630 3.14412 3.31029 3.39947 3.52695 3.66939 3.68386 3.71680 3.89939 3.94253 4.00400 4.21222 4.29344 4.32744 4.36758 4.48027 4.59576 4.65408 4.69615 4.77481 4.78791 4.80419 4.83128 4.88763 4.93970 4.97104 4.98239 4.99038 5.06204 5.13478 5.16101 5.17996 5.24815 5.39348 5.45228 5.50925 5.60535 5.68602 5.78952 6.28311 6.34569 6.77149 6.92441 7.07609 7.08525 7.75756 8.39306 9.23493 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002505 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.656406 B =11174.260684 C =12069.195296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.144 3.856 3 C -0.182 4.182 4 C -0.036 4.036 5 C -0.214 4.214 6 C 0.562 3.438 7 O -0.550 6.550 8 N -0.713 5.713 9 C 0.121 3.879 10 C 0.125 3.875 11 O -0.554 6.554 12 C -0.120 4.120 13 C 0.160 3.840 14 N -0.622 5.622 15 C -0.241 4.241 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.113 3.887 24 C 0.186 3.814 25 C -0.059 4.059 26 C -0.120 4.120 27 C -0.128 4.128 28 N -0.502 5.502 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.408 0.592 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.385 0.615 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.075 0.925 41 H -0.015 1.015 42 H 0.247 0.753 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.101 0.899 46 H 0.050 0.950 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 -13.247 6.116 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.201 4.201 4 C -0.062 4.062 5 C -0.219 4.219 6 C 0.351 3.649 7 O -0.430 6.430 8 N -0.365 5.365 9 C -0.003 4.003 10 C 0.083 3.917 11 O -0.361 6.361 12 C -0.159 4.159 13 C 0.035 3.965 14 N -0.348 5.348 15 C -0.370 4.370 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.202 1.202 23 C -0.013 4.013 24 C 0.048 3.952 25 C -0.078 4.078 26 C -0.178 4.178 27 C -0.185 4.185 28 N -0.212 5.212 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.003 0.997 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.700 -14.578 5.984 26.016 hybrid contribution 0.219 2.149 -0.652 2.257 sum -20.481 -12.428 5.333 24.544 Atomic orbital electron populations 1.20883 0.86206 1.04715 1.04375 1.22191 0.98869 0.88145 0.90190 1.22280 0.94161 1.00621 1.03042 1.22081 0.95580 0.97097 0.91425 1.20692 0.93460 0.95971 1.11797 1.18211 0.86914 0.83770 0.76035 1.90705 1.72862 1.28893 1.50539 1.45754 1.06820 1.09641 1.74325 1.21817 0.79278 0.96064 1.03179 1.22210 0.96326 0.90228 0.82904 1.86602 1.30061 1.86217 1.33207 1.22908 0.92717 0.98644 1.01656 1.21657 0.92423 0.90252 0.92216 1.44678 1.08350 1.41811 1.39985 1.19421 0.97016 1.10871 1.09648 0.89860 1.25658 0.95695 1.02375 1.02255 1.70045 1.01709 1.43765 1.44368 0.85118 0.76397 0.78705 0.78895 1.20342 1.22111 1.20190 1.22124 0.91294 0.92405 0.95479 1.21526 0.89083 0.95033 0.89601 1.20467 0.98781 0.89545 0.99004 1.21549 1.00551 1.01421 0.94286 1.21648 0.99379 0.97626 0.99864 1.67476 1.08597 1.30098 1.14998 0.88795 0.88129 0.90638 0.80875 0.82155 0.75502 0.89883 0.90805 0.76631 0.89570 0.89494 0.90735 0.99728 0.94287 0.94546 0.94554 0.88122 0.93097 0.94098 0.91195 0.91692 0.93548 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 71.23 0.72 -0.23 16 2 C 0.14 2.31 6.78 42.57 0.29 2.60 16 3 C -0.18 -2.43 9.72 22.33 0.22 -2.21 16 4 C -0.04 -0.58 9.63 22.73 0.22 -0.36 16 5 C -0.21 -4.72 5.89 -19.99 -0.12 -4.84 16 6 C 0.56 14.12 7.71 86.78 0.67 14.79 16 7 O -0.55 -16.67 12.03 -3.87 -0.05 -16.72 16 8 N -0.71 -15.72 5.09 -465.98 -2.37 -18.09 16 9 C 0.12 3.17 4.80 86.38 0.41 3.58 16 10 C 0.12 3.92 0.93 -9.61 -0.01 3.91 16 11 O -0.55 -16.58 13.10 -148.98 -1.95 -18.53 16 12 C -0.12 -4.44 6.26 31.99 0.20 -4.24 16 13 C 0.16 7.90 5.88 86.86 0.51 8.42 16 14 N -0.62 -31.21 3.39 -691.99 -2.35 -33.56 16 15 C -0.24 -13.21 10.27 84.03 0.86 -12.35 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 18 N -0.95 -56.48 10.09 21.65 0.22 -56.26 16 19 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.11 4.21 5.76 86.73 0.50 4.71 16 24 C 0.19 4.37 5.81 42.89 0.25 4.62 16 25 C -0.06 -1.38 2.37 -11.54 -0.03 -1.41 16 26 C -0.12 -2.75 8.80 71.98 0.63 -2.12 16 27 C -0.13 -2.50 8.69 71.98 0.63 -1.87 16 28 N -0.50 -10.75 9.05 -171.06 -1.55 -12.30 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.46 8.07 -2.38 -0.02 0.45 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.16 1.74 6.57 -2.91 -0.02 1.72 16 34 H 0.41 7.09 5.62 -92.71 -0.52 6.57 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 37 H 0.38 7.90 8.44 -74.06 -0.62 7.28 16 38 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 3.02 7.96 -2.39 -0.02 3.00 16 40 H 0.07 4.20 5.87 -2.38 -0.01 4.18 16 41 H -0.02 -0.84 8.14 -2.38 -0.02 -0.86 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 44 H 0.04 1.27 8.07 -2.39 -0.02 1.25 16 45 H 0.10 2.70 5.60 -2.39 -0.01 2.69 16 46 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.04 1.08 7.13 -2.39 -0.02 1.06 16 48 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 51 H 0.06 1.22 7.77 -2.38 -0.02 1.20 16 Total: -1.00 -73.13 403.02 0.21 -72.92 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.19 Total: 25.81 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.43 Total: 9.69 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.05 Total: -120.21 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.00 Total: -35.24 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.13 0.21 -72.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278795433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.364 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds