Wall clock time and date at job start Wed Apr 1 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37960 * 120.07584 * 2 1 4 4 C 1.38351 * 120.14401 * 180.27480 * 3 2 1 5 5 C 1.38368 * 120.29690 * 359.74486 * 4 3 2 6 6 C 1.37953 * 120.14111 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.07462 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.85603 * 359.97438 * 6 5 4 9 9 C 1.47845 * 120.15132 * 179.97438 * 8 6 5 10 10 O 1.21552 * 120.00184 * 89.99374 * 9 8 6 11 11 N 1.34780 * 119.99823 * 270.00717 * 9 8 6 12 12 C 1.46498 * 119.99481 * 179.72036 * 11 9 8 13 13 C 1.53007 * 109.46962 * 176.40622 * 12 11 9 14 14 H 1.09001 * 109.46910 * 185.72003 * 13 12 11 15 15 C 1.52999 * 109.47163 * 65.71948 * 13 12 11 16 16 N 1.46897 * 109.46783 * 305.71958 * 13 12 11 17 17 C 1.46896 * 111.00312 * 303.62169 * 16 13 12 18 18 C 1.46901 * 110.99988 * 179.66508 * 16 13 12 19 19 C 1.50701 * 109.47390 * 190.00065 * 18 16 13 20 20 O 1.21292 * 119.99895 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00293 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99790 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00489 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99436 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00598 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99698 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46913 * 60.00310 * 26 24 22 28 28 H 1.48503 * 109.47066 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47296 * 300.00143 * 26 24 22 30 30 H 1.08997 * 109.47128 * 270.20857 * 1 2 3 31 31 H 1.08999 * 109.47036 * 30.21255 * 1 2 3 32 32 H 1.09006 * 109.47490 * 150.21264 * 1 2 3 33 33 H 1.07999 * 119.92137 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.85363 * 179.76525 * 4 3 2 35 35 H 1.07992 * 119.92770 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47542 * 270.02335 * 7 6 5 37 37 H 1.09003 * 109.47303 * 30.02324 * 7 6 5 38 38 H 1.09004 * 109.47476 * 150.02100 * 7 6 5 39 39 H 0.96992 * 120.00236 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47440 * 296.39888 * 12 11 9 41 41 H 1.08996 * 109.47809 * 56.40643 * 12 11 9 42 42 H 1.09001 * 109.46942 * 60.00564 * 15 13 12 43 43 H 1.08998 * 109.46834 * 180.02562 * 15 13 12 44 44 H 1.09000 * 109.46754 * 300.00015 * 15 13 12 45 45 H 1.08999 * 109.47401 * 62.73767 * 17 16 13 46 46 H 1.08998 * 109.47425 * 182.74009 * 17 16 13 47 47 H 1.09004 * 109.47046 * 302.73514 * 17 16 13 48 48 H 1.08996 * 109.46781 * 309.99885 * 18 16 13 49 49 H 1.08998 * 109.46790 * 70.00013 * 18 16 13 50 50 H 0.96999 * 119.99807 * 0.02562 * 21 19 18 51 51 H 0.96995 * 120.00441 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1955 -0.0057 5 6 4.2813 0.0016 -0.0062 6 6 3.6022 -1.1991 -0.0014 7 6 4.3655 -2.4985 -0.0025 8 6 2.2065 -1.2079 0.0044 9 6 1.4720 -2.4910 0.0089 10 8 1.1745 -3.0174 1.0634 11 7 1.1325 -3.0773 -1.1563 12 6 0.4101 -4.3517 -1.1517 13 6 0.0710 -4.7509 -2.5894 14 1 -0.5531 -5.6445 -2.5807 15 6 1.3629 -5.0385 -3.3570 16 7 -0.6538 -3.6537 -3.2441 17 6 -1.8583 -3.2917 -2.4854 18 6 -0.9897 -3.9989 -4.6319 19 6 -1.5070 -2.7751 -5.3430 20 8 -1.5875 -1.7189 -4.7519 21 7 -1.8793 -2.8537 -6.6359 22 6 -2.3504 -1.7404 -7.2825 23 1 -2.4229 -0.8002 -6.7560 24 6 -2.7348 -1.8218 -8.6153 25 7 -2.6462 -2.9656 -9.2562 26 14 -3.3760 -0.3046 -9.4966 27 1 -2.3318 0.7512 -9.4881 28 1 -3.7150 -0.6535 -10.8997 29 1 -4.5904 0.1946 -8.8029 30 1 -0.3633 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3634 -0.8919 -0.5105 33 1 1.6583 2.1291 0.0004 34 1 4.1184 2.1328 -0.0095 35 1 5.3612 0.0099 -0.0111 36 1 4.5456 -2.8132 -1.0304 37 1 5.3189 -2.3603 0.5075 38 1 3.7841 -3.2619 0.5146 39 1 1.3697 -2.6572 -1.9977 40 1 1.0345 -5.1218 -0.6986 41 1 -0.5103 -4.2458 -0.5775 42 1 1.9006 -5.8527 -2.8711 43 1 1.1213 -5.3224 -4.3813 44 1 1.9869 -4.1449 -3.3656 45 1 -1.5707 -2.9272 -1.4992 46 1 -2.4017 -2.5106 -3.0171 47 1 -2.4965 -4.1687 -2.3767 48 1 -0.0983 -4.3653 -5.1411 49 1 -1.7561 -4.7739 -4.6381 50 1 -1.8146 -3.6982 -7.1086 51 1 -2.9141 -3.0222 -10.1867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282460801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:08 Heat of formation + Delta-G solvation = -46.815757 kcal Electronic energy + Delta-G solvation = -31227.260181 eV Core-core repulsion = 27126.383317 eV Total energy + Delta-G solvation = -4100.876864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.53243 -39.14985 -38.34637 -37.15881 -34.33631 -33.75891 -33.74496 -32.28557 -31.26408 -30.94113 -28.64617 -27.80697 -26.80136 -26.12466 -24.91521 -23.84021 -23.11202 -20.86425 -20.47318 -19.97760 -19.09472 -17.91235 -17.72863 -16.62383 -16.22012 -16.03124 -15.53098 -15.44265 -14.86723 -14.74147 -14.40597 -14.30618 -14.11377 -13.77229 -13.73166 -13.59712 -13.33838 -13.30888 -13.14740 -13.07746 -12.82927 -12.47628 -12.24953 -12.03833 -11.93299 -11.76958 -11.63047 -11.54732 -11.49919 -11.35645 -11.22127 -11.18261 -10.92454 -10.60853 -10.45921 -10.23108 -9.91610 -9.48293 -9.01693 -8.90401 -8.72803 -8.47880 -8.00591 -7.90872 -6.43530 -3.84327 1.02181 1.20535 2.59792 3.18287 3.19216 3.24287 3.28369 3.54909 3.87943 3.92347 4.21748 4.56480 4.63532 4.65904 4.73947 4.81740 4.90040 5.09079 5.09822 5.20183 5.23651 5.25671 5.35909 5.41016 5.44385 5.49660 5.55626 5.60777 5.65080 5.65958 5.70387 5.71359 5.75662 5.87802 5.92715 5.95753 5.97783 6.13180 6.17780 6.26465 6.27311 6.30433 6.40727 6.44411 6.53073 6.78330 7.20774 7.32391 7.53153 7.56802 8.04298 8.21756 8.59962 9.16371 9.52753 10.04527 10.74159 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002701 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.819477 B =10363.208845 C =11569.454336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.098 4.098 5 C -0.131 4.131 6 C -0.049 4.049 7 C -0.121 4.121 8 C -0.126 4.126 9 C 0.568 3.432 10 O -0.545 6.545 11 N -0.703 5.703 12 C 0.128 3.872 13 C 0.064 3.936 14 H 0.055 0.945 15 C -0.149 4.149 16 N -0.512 5.512 17 C 0.020 3.980 18 C 0.041 3.959 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.014 0.986 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.391 0.609 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.948 -1.261 15.665 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.040 4.040 3 C -0.146 4.146 4 C -0.116 4.116 5 C -0.149 4.149 6 C -0.050 4.050 7 C -0.178 4.178 8 C -0.129 4.129 9 C 0.353 3.647 10 O -0.423 6.423 11 N -0.355 5.355 12 C 0.004 3.996 13 C -0.045 4.045 14 H 0.072 0.928 15 C -0.207 4.207 16 N -0.237 5.237 17 C -0.127 4.127 18 C -0.090 4.090 19 C 0.229 3.771 20 O -0.461 6.461 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.033 0.967 48 H 0.110 0.890 49 H 0.065 0.935 50 H 0.224 0.776 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.916 -0.597 16.579 20.426 hybrid contribution -0.748 -0.311 -1.297 1.530 sum 11.168 -0.908 15.282 18.949 Atomic orbital electron populations 1.20907 0.90470 1.03961 1.02620 1.19924 0.96296 0.91669 0.96131 1.20980 0.94271 0.97417 1.01933 1.21245 0.94231 0.98081 0.98078 1.20915 0.99820 0.91640 1.02564 1.19839 0.91830 0.95913 0.97411 1.20875 0.99965 0.94170 1.02759 1.19653 0.93429 0.93097 1.06769 1.18228 0.78428 0.84057 0.83950 1.90779 1.55241 1.64953 1.31300 1.45938 1.57249 1.23416 1.08927 1.21415 0.96811 0.85513 0.95889 1.21970 0.96160 0.93227 0.93171 0.92752 1.21930 0.96420 1.01836 1.00490 1.61623 1.24318 1.36620 1.01109 1.22564 0.90950 1.00573 0.98634 1.21953 1.00609 0.96779 0.89682 1.19716 0.84455 0.89768 0.83111 1.90487 1.59039 1.30424 1.66131 1.41857 1.56608 1.12435 1.09189 1.19637 1.38800 0.90769 0.93645 0.87986 1.25248 0.97741 0.98166 0.96720 1.69596 1.48301 1.24741 1.11743 0.85937 0.79370 0.81047 0.77985 1.19885 1.20997 1.19929 0.90791 0.90631 0.90897 0.85485 0.85747 0.85673 0.90605 0.91047 0.91272 0.74962 0.91202 0.91195 0.92100 0.91731 0.91701 0.92022 0.88562 0.96735 0.88962 0.93506 0.77553 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.62 36.01 0.35 -1.15 16 2 C -0.04 -0.50 5.91 -104.22 -0.62 -1.12 16 3 C -0.13 -1.38 9.69 -39.64 -0.38 -1.77 16 4 C -0.10 -0.95 10.04 -39.49 -0.40 -1.35 16 5 C -0.13 -1.29 9.69 -39.64 -0.38 -1.68 16 6 C -0.05 -0.56 5.91 -104.23 -0.62 -1.18 16 7 C -0.12 -1.14 9.62 36.00 0.35 -0.79 16 8 C -0.13 -1.66 5.63 -104.96 -0.59 -2.25 16 9 C 0.57 7.95 4.19 -12.33 -0.05 7.89 16 10 O -0.54 -9.26 17.10 5.32 0.09 -9.17 16 11 N -0.70 -8.77 5.12 -61.25 -0.31 -9.08 16 12 C 0.13 1.48 4.60 -4.04 -0.02 1.46 16 13 C 0.06 0.73 2.33 -67.71 -0.16 0.57 16 14 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.15 -1.51 8.86 37.16 0.33 -1.18 16 16 N -0.51 -7.63 3.83 -236.33 -0.91 -8.53 16 17 C 0.02 0.32 8.68 60.06 0.52 0.84 16 18 C 0.04 0.68 5.26 -4.97 -0.03 0.65 16 19 C 0.44 9.96 7.45 -10.99 -0.08 9.88 16 20 O -0.58 -14.72 13.93 5.55 0.08 -14.64 16 21 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 22 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 26 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.07 0.75 7.08 -51.93 -0.37 0.38 16 39 H 0.41 5.30 7.28 -40.82 -0.30 5.00 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.67 6.19 -51.93 -0.32 0.35 16 44 H 0.06 0.69 7.15 -51.93 -0.37 0.32 16 45 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 46 H 0.10 1.84 5.80 -51.93 -0.30 1.54 16 47 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.09 1.38 5.81 -51.93 -0.30 1.08 16 49 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 50 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 51 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 412.22 15.07 6.21 6.21 Total: -1.00 -31.91 412.22 -9.14 -41.04 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.92 Total: 14.72 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.02 Total: 1.06 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.55 Total: -54.96 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.91 -9.14 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282460801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.771 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds