Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37960 * 120.07584 * 2 1 4 4 C 1.38351 * 120.14401 * 180.27480 * 3 2 1 5 5 C 1.38368 * 120.29690 * 359.74486 * 4 3 2 6 6 C 1.37953 * 120.14111 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.07462 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.85603 * 359.97438 * 6 5 4 9 9 C 1.47845 * 120.15132 * 179.97438 * 8 6 5 10 10 O 1.21552 * 120.00184 * 89.99374 * 9 8 6 11 11 N 1.34780 * 119.99823 * 270.00717 * 9 8 6 12 12 C 1.46498 * 119.99481 * 179.72036 * 11 9 8 13 13 C 1.53007 * 109.46962 * 176.40622 * 12 11 9 14 14 H 1.09001 * 109.46910 * 185.72003 * 13 12 11 15 15 C 1.52999 * 109.47163 * 65.71948 * 13 12 11 16 16 N 1.46897 * 109.46783 * 305.71958 * 13 12 11 17 17 C 1.46896 * 111.00312 * 303.62169 * 16 13 12 18 18 C 1.46901 * 110.99988 * 179.66508 * 16 13 12 19 19 C 1.50701 * 109.47390 * 190.00065 * 18 16 13 20 20 O 1.21292 * 119.99895 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00293 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99790 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00489 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99436 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00598 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99698 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46913 * 60.00310 * 26 24 22 28 28 H 1.48503 * 109.47066 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47296 * 300.00143 * 26 24 22 30 30 H 1.08997 * 109.47128 * 270.20857 * 1 2 3 31 31 H 1.08999 * 109.47036 * 30.21255 * 1 2 3 32 32 H 1.09006 * 109.47490 * 150.21264 * 1 2 3 33 33 H 1.07999 * 119.92137 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.85363 * 179.76525 * 4 3 2 35 35 H 1.07992 * 119.92770 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47542 * 270.02335 * 7 6 5 37 37 H 1.09003 * 109.47303 * 30.02324 * 7 6 5 38 38 H 1.09004 * 109.47476 * 150.02100 * 7 6 5 39 39 H 0.96992 * 120.00236 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47440 * 296.39888 * 12 11 9 41 41 H 1.08996 * 109.47809 * 56.40643 * 12 11 9 42 42 H 1.09001 * 109.46942 * 60.00564 * 15 13 12 43 43 H 1.08998 * 109.46834 * 180.02562 * 15 13 12 44 44 H 1.09000 * 109.46754 * 300.00015 * 15 13 12 45 45 H 1.08999 * 109.47401 * 62.73767 * 17 16 13 46 46 H 1.08998 * 109.47425 * 182.74009 * 17 16 13 47 47 H 1.09004 * 109.47046 * 302.73514 * 17 16 13 48 48 H 1.08996 * 109.46781 * 309.99885 * 18 16 13 49 49 H 1.08998 * 109.46790 * 70.00013 * 18 16 13 50 50 H 0.96999 * 119.99807 * 0.02562 * 21 19 18 51 51 H 0.96995 * 120.00441 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1955 -0.0057 5 6 4.2813 0.0016 -0.0062 6 6 3.6022 -1.1991 -0.0014 7 6 4.3655 -2.4985 -0.0025 8 6 2.2065 -1.2079 0.0044 9 6 1.4720 -2.4910 0.0089 10 8 1.1745 -3.0174 1.0634 11 7 1.1325 -3.0773 -1.1563 12 6 0.4101 -4.3517 -1.1517 13 6 0.0710 -4.7509 -2.5894 14 1 -0.5531 -5.6445 -2.5807 15 6 1.3629 -5.0385 -3.3570 16 7 -0.6538 -3.6537 -3.2441 17 6 -1.8583 -3.2917 -2.4854 18 6 -0.9897 -3.9989 -4.6319 19 6 -1.5070 -2.7751 -5.3430 20 8 -1.5875 -1.7189 -4.7519 21 7 -1.8793 -2.8537 -6.6359 22 6 -2.3504 -1.7404 -7.2825 23 1 -2.4229 -0.8002 -6.7560 24 6 -2.7348 -1.8218 -8.6153 25 7 -2.6462 -2.9656 -9.2562 26 14 -3.3760 -0.3046 -9.4966 27 1 -2.3318 0.7512 -9.4881 28 1 -3.7150 -0.6535 -10.8997 29 1 -4.5904 0.1946 -8.8029 30 1 -0.3633 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5171 32 1 -0.3634 -0.8919 -0.5105 33 1 1.6583 2.1291 0.0004 34 1 4.1184 2.1328 -0.0095 35 1 5.3612 0.0099 -0.0111 36 1 4.5456 -2.8132 -1.0304 37 1 5.3189 -2.3603 0.5075 38 1 3.7841 -3.2619 0.5146 39 1 1.3697 -2.6572 -1.9977 40 1 1.0345 -5.1218 -0.6986 41 1 -0.5103 -4.2458 -0.5775 42 1 1.9006 -5.8527 -2.8711 43 1 1.1213 -5.3224 -4.3813 44 1 1.9869 -4.1449 -3.3656 45 1 -1.5707 -2.9272 -1.4992 46 1 -2.4017 -2.5106 -3.0171 47 1 -2.4965 -4.1687 -2.3767 48 1 -0.0983 -4.3653 -5.1411 49 1 -1.7561 -4.7739 -4.6381 50 1 -1.8146 -3.6982 -7.1086 51 1 -2.9141 -3.0222 -10.1867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282460801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = -68.135939 kcal Electronic energy + Delta-G solvation = -31228.184693 eV Core-core repulsion = 27126.383317 eV Total energy + Delta-G solvation = -4101.801376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.51538 -40.50700 -39.54205 -38.51731 -35.98678 -35.22121 -34.58490 -33.25419 -33.15420 -31.94310 -29.91853 -28.80654 -27.61052 -27.36880 -26.42002 -25.19253 -24.10351 -21.70082 -21.44058 -21.29710 -20.62826 -19.79842 -18.75972 -17.93520 -17.29889 -17.18307 -16.71843 -16.59441 -16.34125 -16.12699 -15.73241 -15.45215 -15.30227 -15.06191 -14.94019 -14.85863 -14.40790 -14.33183 -14.14049 -13.93253 -13.80419 -13.66824 -13.56402 -13.33843 -13.11714 -12.98470 -12.88158 -12.72438 -12.57091 -12.42453 -12.41242 -12.33377 -12.28366 -12.12421 -11.99823 -11.67548 -11.42031 -10.99542 -10.23257 -10.06930 -9.96428 -9.76380 -9.55232 -9.22098 -8.44052 -5.91919 0.17281 0.37937 1.40438 1.42283 1.52520 1.52865 2.10341 2.20971 2.30049 2.69849 2.76114 3.23279 3.44352 3.66875 3.72766 3.83408 3.86886 3.99572 4.04367 4.20227 4.32819 4.35460 4.39375 4.40528 4.51237 4.53404 4.57380 4.62084 4.62966 4.66125 4.72407 4.74519 4.76836 4.83820 4.88627 4.93762 5.01951 5.11577 5.18185 5.25297 5.35454 5.40852 5.43506 5.46361 5.51066 5.55894 5.88574 5.99818 6.07651 6.19805 6.50716 6.64350 7.15778 7.16621 7.61151 8.17269 8.73210 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002701 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.819477 B =10363.208845 C =11569.454336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.131 4.131 6 C -0.061 4.061 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.572 3.428 10 O -0.582 6.582 11 N -0.696 5.696 12 C 0.129 3.871 13 C 0.070 3.930 14 H 0.073 0.927 15 C -0.147 4.147 16 N -0.523 5.523 17 C 0.030 3.970 18 C 0.054 3.946 19 C 0.443 3.557 20 O -0.611 6.611 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.412 0.588 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.030 0.970 48 H 0.116 0.884 49 H 0.065 0.935 50 H 0.395 0.605 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -1.518 15.514 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.114 4.114 5 C -0.149 4.149 6 C -0.061 4.061 7 C -0.174 4.174 8 C -0.156 4.156 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.346 5.346 12 C 0.005 3.995 13 C -0.038 4.038 14 H 0.091 0.909 15 C -0.204 4.204 16 N -0.249 5.249 17 C -0.118 4.118 18 C -0.077 4.077 19 C 0.231 3.769 20 O -0.497 6.497 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.563 5.563 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.134 0.866 49 H 0.083 0.917 50 H 0.229 0.771 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.698 -0.881 16.416 21.399 hybrid contribution -1.254 -0.217 -1.174 1.731 sum 12.445 -1.098 15.242 19.708 Atomic orbital electron populations 1.20845 0.91015 1.03169 1.02506 1.20075 0.96262 0.92486 0.97506 1.21255 0.95210 0.97337 1.01653 1.21650 0.93836 0.99441 0.96457 1.21301 1.01327 0.91011 1.01237 1.20153 0.91287 0.97460 0.97220 1.20882 1.00318 0.92765 1.03404 1.19761 0.94476 0.92640 1.08707 1.18404 0.77888 0.84223 0.83585 1.90744 1.56963 1.66106 1.32490 1.45927 1.56658 1.23572 1.08468 1.21479 0.96552 0.85478 0.95992 1.22034 0.96624 0.92464 0.92698 0.90949 1.21933 0.95561 1.02392 1.00515 1.61558 1.24074 1.38734 1.00494 1.22360 0.91277 0.99974 0.98181 1.21816 1.01832 0.93853 0.90160 1.20764 0.82604 0.91168 0.82407 1.90474 1.59863 1.32575 1.66749 1.41923 1.57484 1.11929 1.10040 1.19594 1.40769 0.91027 0.94534 0.90351 1.25973 0.97465 1.00927 0.96845 1.69657 1.48516 1.26016 1.12111 0.85050 0.78640 0.77783 0.77252 1.19718 1.19654 1.19844 0.90639 0.89939 0.93038 0.83890 0.82723 0.82778 0.89597 0.88925 0.93105 0.75089 0.89683 0.92315 0.89730 0.91625 0.92415 0.91628 0.92483 0.95186 0.86595 0.91697 0.77137 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.62 71.24 0.69 -2.36 16 2 C -0.06 -1.60 5.91 -19.61 -0.12 -1.72 16 3 C -0.14 -2.82 9.69 22.23 0.22 -2.61 16 4 C -0.10 -1.63 10.04 22.33 0.22 -1.41 16 5 C -0.13 -2.27 9.69 22.23 0.22 -2.06 16 6 C -0.06 -1.31 5.91 -19.61 -0.12 -1.43 16 7 C -0.12 -2.04 9.62 71.23 0.69 -1.35 16 8 C -0.15 -4.05 5.63 -20.09 -0.11 -4.16 16 9 C 0.57 16.38 4.19 86.79 0.36 16.75 16 10 O -0.58 -20.39 17.10 -3.88 -0.07 -20.45 16 11 N -0.70 -17.37 5.12 -465.97 -2.39 -19.76 16 12 C 0.13 2.86 4.60 86.38 0.40 3.26 16 13 C 0.07 1.46 2.33 44.92 0.10 1.57 16 14 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.15 -2.59 8.86 71.98 0.64 -1.95 16 16 N -0.52 -15.19 3.83 -901.62 -3.45 -18.64 16 17 C 0.03 0.94 8.68 127.69 1.11 2.05 16 18 C 0.05 1.74 5.26 85.56 0.45 2.19 16 19 C 0.44 20.14 7.45 87.66 0.65 20.80 16 20 O -0.61 -32.22 13.93 -3.07 -0.04 -32.27 16 21 N -0.58 -28.71 5.29 -306.98 -1.62 -30.34 16 22 C -0.33 -18.37 9.68 84.04 0.81 -17.55 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 26 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.05 1.51 7.08 -2.38 -0.02 1.49 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 38 H 0.05 1.07 7.08 -2.39 -0.02 1.06 16 39 H 0.41 10.60 7.28 -92.71 -0.67 9.93 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.46 6.75 -2.39 -0.02 1.44 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.17 6.19 -2.39 -0.01 1.15 16 44 H 0.06 1.12 7.15 -2.39 -0.02 1.10 16 45 H 0.07 1.97 6.53 -2.39 -0.02 1.96 16 46 H 0.06 2.26 5.80 -2.39 -0.01 2.25 16 47 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.12 3.21 5.81 -2.39 -0.01 3.20 16 49 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 50 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 51 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -71.22 412.22 0.97 -70.25 By element: Atomic # 1 Polarization: 46.18 SS G_CDS: -0.45 Total: 45.73 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.68 Total: 9.82 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -7.18 Total: -117.65 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.11 Total: -52.72 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.22 0.97 -70.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282460801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.118 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds