Wall clock time and date at job start Wed Apr 1 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31878 * 119.61742 * 2 1 4 4 C 1.31860 * 121.72751 * 179.72217 * 3 2 1 5 5 C 1.38223 * 120.75967 * 0.02562 * 4 3 2 6 6 C 1.38629 * 119.16598 * 359.97438 * 5 4 3 7 7 C 1.38181 * 119.61473 * 179.72142 * 2 1 3 8 8 C 1.50700 * 120.42089 * 0.25306 * 7 2 1 9 9 C 1.50706 * 109.46740 * 84.99896 * 8 7 2 10 10 O 1.21281 * 120.00068 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99730 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.63112 * 0.02562 * 11 9 8 13 13 C 1.53190 * 108.77701 * 126.36436 * 12 11 9 14 14 C 1.53047 * 109.31162 * 54.63100 * 13 12 11 15 15 C 1.53038 * 109.54048 * 298.63457 * 14 13 12 16 16 H 1.08996 * 109.50084 * 301.38206 * 15 14 13 17 17 N 1.46495 * 109.49781 * 181.31291 * 15 14 13 18 18 C 1.36936 * 120.00419 * 300.00553 * 17 15 14 19 19 H 1.08000 * 119.99765 * 326.30215 * 18 17 15 20 20 C 1.38813 * 120.00339 * 146.30152 * 18 17 15 21 21 N 1.31624 * 119.99853 * 337.21994 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 157.22071 * 20 18 17 23 23 H 1.48505 * 109.47455 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47393 * 120.00002 * 22 20 18 25 25 H 1.48499 * 109.47355 * 240.00207 * 22 20 18 26 26 C 1.46510 * 119.99845 * 120.00193 * 17 15 14 27 27 C 1.53001 * 109.46681 * 84.41472 * 26 17 15 28 28 O 1.42900 * 109.47048 * 65.00349 * 27 26 17 29 29 C 1.46930 * 120.62663 * 179.71801 * 11 9 8 30 30 H 1.08995 * 109.47231 * 90.00358 * 1 2 3 31 31 H 1.09004 * 109.47411 * 210.00303 * 1 2 3 32 32 H 1.09006 * 109.46848 * 330.00525 * 1 2 3 33 33 H 1.07997 * 119.61844 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.41760 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.79346 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47504 * 204.99856 * 8 7 2 37 37 H 1.08997 * 109.47157 * 325.00396 * 8 7 2 38 38 H 1.09000 * 109.58660 * 246.15021 * 12 11 9 39 39 H 1.08999 * 109.58828 * 6.43433 * 12 11 9 40 40 H 1.09000 * 109.49943 * 174.58286 * 13 12 11 41 41 H 1.08999 * 109.49814 * 294.68740 * 13 12 11 42 42 H 1.09000 * 109.45704 * 58.65621 * 14 13 12 43 43 H 1.08998 * 109.45757 * 178.61093 * 14 13 12 44 44 H 0.96995 * 119.99731 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.46688 * 204.41631 * 26 17 15 46 46 H 1.08999 * 109.47011 * 324.41659 * 26 17 15 47 47 H 1.09004 * 109.46764 * 185.00050 * 27 26 17 48 48 H 1.08999 * 109.47257 * 304.99815 * 27 26 17 49 49 H 0.96705 * 113.99401 * 179.97438 * 28 27 26 50 50 H 1.08994 * 109.58676 * 353.42668 * 29 11 9 51 51 H 1.09006 * 109.58118 * 113.84895 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1950 0.0054 5 6 4.2266 0.0341 0.0109 6 6 3.5765 -1.1903 0.0111 7 6 2.1898 -1.2013 0.0058 8 6 1.4372 -2.5069 0.0064 9 6 1.0844 -2.8839 -1.4094 10 8 1.4124 -2.1636 -2.3284 11 7 0.4054 -4.0221 -1.6544 12 6 0.0017 -4.9051 -0.5516 13 6 -1.5059 -5.1583 -0.6493 14 6 -1.8392 -5.6990 -2.0418 15 6 -1.4541 -4.6619 -3.0992 16 1 -1.9922 -3.7330 -2.9107 17 7 -1.8022 -5.1674 -4.4294 18 6 -1.2430 -6.3302 -4.8880 19 1 -0.2327 -6.5904 -4.6087 20 6 -1.9747 -7.1746 -5.7118 21 7 -3.2900 -7.1270 -5.7013 22 14 -1.0926 -8.3785 -6.8351 23 1 0.3750 -8.2347 -6.6600 24 1 -1.4991 -9.7649 -6.4917 25 1 -1.4524 -8.0926 -8.2472 26 6 -2.7488 -4.4288 -5.2691 27 6 -2.0053 -3.3283 -6.0288 28 8 -1.0762 -3.9214 -6.9382 29 6 0.0489 -4.4000 -3.0288 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 3.9752 2.1529 0.0048 34 1 5.3057 0.0803 0.0149 35 1 4.1367 -2.1137 0.0156 36 1 2.0608 -3.2857 0.4452 37 1 0.5241 -2.3996 0.5920 38 1 0.5368 -5.8517 -0.6269 39 1 0.2334 -4.4291 0.4012 40 1 -1.8020 -5.8878 0.1046 41 1 -2.0432 -4.2245 -0.4836 42 1 -1.2826 -6.6197 -2.2165 43 1 -2.9079 -5.9033 -2.1058 44 1 -3.8012 -7.7168 -6.2772 45 1 -3.2127 -5.1118 -5.9806 46 1 -3.5185 -3.9805 -4.6410 47 1 -2.7216 -2.7229 -6.5844 48 1 -1.4683 -2.6972 -5.3207 49 1 -0.5686 -3.2809 -7.4552 50 1 0.3095 -3.5898 -3.7097 51 1 0.5881 -5.3045 -3.3104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316747812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:33 Heat of formation + Delta-G solvation = -24.775252 kcal Electronic energy + Delta-G solvation = -31946.564695 eV Core-core repulsion = 27846.643579 eV Total energy + Delta-G solvation = -4099.921116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.74197 -39.63051 -37.51099 -36.15852 -34.62240 -33.92426 -33.09343 -32.19518 -31.30427 -29.90823 -28.79360 -27.53574 -27.03364 -24.87565 -24.13877 -22.86940 -22.23400 -21.94334 -20.78792 -19.74329 -18.65046 -17.12042 -17.02716 -16.54553 -16.52061 -16.39660 -15.67787 -15.17426 -14.76528 -14.64847 -14.40052 -14.31699 -13.98696 -13.74242 -13.51645 -13.33889 -13.25007 -12.97108 -12.83589 -12.75665 -12.58835 -12.39843 -12.33746 -12.06123 -12.03856 -11.45208 -11.27599 -11.01125 -10.95189 -10.76372 -10.67521 -10.36555 -10.23279 -9.96424 -9.89588 -9.83934 -9.57806 -9.54052 -9.52821 -9.05509 -8.87490 -8.48050 -8.24068 -6.57042 -5.72717 -3.23025 0.97717 1.17736 2.78304 3.19826 3.43733 3.52504 3.55845 3.70066 4.18323 4.44433 4.56054 4.61231 4.69990 4.71957 4.84303 4.97789 5.12901 5.19601 5.22724 5.27416 5.36974 5.37959 5.45329 5.48131 5.49597 5.54244 5.60186 5.72056 5.84627 5.95174 5.96355 6.02084 6.02960 6.11776 6.14691 6.21091 6.29260 6.36403 6.50348 6.59754 6.60985 6.67125 6.80734 6.83456 7.04357 7.18002 7.67182 7.71128 7.87303 7.89496 8.37489 8.47368 8.63849 9.22954 9.88640 10.41111 11.30248 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.002857 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.619314 B = 9798.586209 C =10165.682279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.146 3.854 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.181 4.181 6 C -0.061 4.061 7 C -0.113 4.113 8 C -0.101 4.101 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.605 5.605 12 C 0.106 3.894 13 C -0.134 4.134 14 C -0.122 4.122 15 C 0.167 3.833 16 H 0.048 0.952 17 N -0.569 5.569 18 C -0.236 4.236 19 H 0.058 0.942 20 C 0.015 3.985 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.142 3.858 27 C 0.058 3.942 28 O -0.545 6.545 29 C 0.103 3.897 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.251 0.749 45 H 0.109 0.891 46 H 0.035 0.965 47 H 0.020 0.980 48 H 0.022 0.978 49 H 0.350 0.650 50 H 0.083 0.917 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 10.505 15.069 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.008 3.992 3 N -0.195 5.195 4 C -0.059 4.059 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.141 4.141 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.338 5.338 12 C -0.017 4.017 13 C -0.173 4.173 14 C -0.161 4.161 15 C 0.058 3.942 16 H 0.066 0.934 17 N -0.288 5.288 18 C -0.365 4.365 19 H 0.076 0.924 20 C -0.184 4.184 21 N -0.537 5.537 22 Si 0.728 3.272 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.022 4.022 28 O -0.346 6.346 29 C -0.020 4.020 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.127 0.873 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.040 0.960 49 H 0.193 0.807 50 H 0.101 0.899 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.655 10.991 14.724 19.904 hybrid contribution 1.227 -0.932 -0.929 1.799 sum 8.881 10.059 13.795 19.245 Atomic orbital electron populations 1.20791 0.89060 1.03088 1.03635 1.21046 0.96873 0.87698 0.93582 1.67509 1.10071 1.29097 1.12868 1.22690 0.89516 0.98372 0.95272 1.22048 1.01308 0.93399 1.03282 1.21427 0.93581 0.98560 0.95142 1.20115 0.94215 0.95029 1.02193 1.20706 1.01835 0.95387 0.96206 1.20316 0.78325 0.80852 0.90532 1.90711 1.53753 1.50950 1.46165 1.48265 1.54910 1.21755 1.08919 1.21773 0.96412 0.94442 0.89035 1.21972 0.94554 1.01242 0.99488 1.21931 1.02071 1.00217 0.91910 1.20512 0.91917 0.94805 0.86955 0.93406 1.43694 1.51046 1.23780 1.10254 1.18820 0.94831 0.96217 1.26653 0.92418 1.24926 0.94789 0.97239 1.01486 1.69984 1.04458 1.39714 1.39499 0.86325 0.79536 0.79984 0.81361 1.20344 1.22266 1.21602 1.21078 0.90253 0.92742 0.94329 1.23086 0.91029 0.96990 0.91089 1.86824 1.55916 1.35677 1.56156 1.22230 0.98547 1.01012 0.80189 0.89902 0.90760 0.90497 0.82921 0.84915 0.85028 0.88068 0.87559 0.91270 0.90608 0.91319 0.92199 0.91281 0.91810 0.93859 0.87343 0.94667 0.96233 0.95957 0.80691 0.89901 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.77 36.00 0.35 -0.84 16 2 C 0.15 1.87 6.78 -82.59 -0.56 1.31 16 3 N -0.49 -6.47 10.27 -9.48 -0.10 -6.57 16 4 C 0.10 1.07 11.18 -17.54 -0.20 0.88 16 5 C -0.18 -1.78 10.11 -39.44 -0.40 -2.18 16 6 C -0.06 -0.66 9.84 -39.28 -0.39 -1.05 16 7 C -0.11 -1.35 4.39 -104.48 -0.46 -1.81 16 8 C -0.10 -1.05 3.70 -29.03 -0.11 -1.16 16 9 C 0.51 7.61 7.69 -10.98 -0.08 7.53 16 10 O -0.54 -10.33 15.45 5.56 0.09 -10.24 16 11 N -0.60 -8.98 2.98 -173.05 -0.52 -9.50 16 12 C 0.11 1.22 6.34 -3.71 -0.02 1.19 16 13 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 14 C -0.12 -2.16 5.12 -26.69 -0.14 -2.29 16 15 C 0.17 3.28 2.77 -68.05 -0.19 3.09 16 16 H 0.05 0.93 7.87 -51.93 -0.41 0.53 16 17 N -0.57 -13.42 2.35 -165.80 -0.39 -13.81 16 18 C -0.24 -6.20 8.06 -15.06 -0.12 -6.32 16 19 H 0.06 1.54 6.73 -52.49 -0.35 1.19 16 20 C 0.01 0.40 4.90 -17.43 -0.09 0.31 16 21 N -0.89 -25.25 11.36 55.49 0.63 -24.62 16 22 Si 0.90 22.15 29.61 -169.99 -5.03 17.12 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 C 0.14 3.31 5.57 -4.04 -0.02 3.29 16 27 C 0.06 1.20 7.39 37.16 0.27 1.47 16 28 O -0.54 -11.83 13.40 -35.23 -0.47 -12.30 16 29 C 0.10 1.94 5.74 -3.95 -0.02 1.92 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.10 0.80 7.86 -51.93 -0.41 0.40 16 37 H 0.11 0.88 5.72 -51.93 -0.30 0.58 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.11 2.92 5.35 -51.93 -0.28 2.64 16 46 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.35 5.74 9.12 45.56 0.42 6.15 16 50 H 0.08 1.76 7.01 -51.93 -0.36 1.40 16 51 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -34.00 403.92 -9.30 -43.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.27 Total: 7.02 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.33 Total: 3.51 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.37 Total: -54.49 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.39 Total: -22.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.00 -9.30 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.521 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds