Wall clock time and date at job start Wed Apr 1 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31878 * 119.61742 * 2 1 4 4 C 1.31860 * 121.72751 * 179.72217 * 3 2 1 5 5 C 1.38223 * 120.75967 * 0.02562 * 4 3 2 6 6 C 1.38629 * 119.16598 * 359.97438 * 5 4 3 7 7 C 1.38181 * 119.61473 * 179.72142 * 2 1 3 8 8 C 1.50700 * 120.42089 * 0.25306 * 7 2 1 9 9 C 1.50706 * 109.46740 * 84.99896 * 8 7 2 10 10 O 1.21281 * 120.00068 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99730 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.63112 * 0.02562 * 11 9 8 13 13 C 1.53190 * 108.77701 * 126.36436 * 12 11 9 14 14 C 1.53047 * 109.31162 * 54.63100 * 13 12 11 15 15 C 1.53038 * 109.54048 * 298.63457 * 14 13 12 16 16 H 1.08996 * 109.50084 * 301.38206 * 15 14 13 17 17 N 1.46495 * 109.49781 * 181.31291 * 15 14 13 18 18 C 1.36936 * 120.00419 * 300.00553 * 17 15 14 19 19 H 1.08000 * 119.99765 * 326.30215 * 18 17 15 20 20 C 1.38813 * 120.00339 * 146.30152 * 18 17 15 21 21 N 1.31624 * 119.99853 * 337.21994 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 157.22071 * 20 18 17 23 23 H 1.48505 * 109.47455 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47393 * 120.00002 * 22 20 18 25 25 H 1.48499 * 109.47355 * 240.00207 * 22 20 18 26 26 C 1.46510 * 119.99845 * 120.00193 * 17 15 14 27 27 C 1.53001 * 109.46681 * 84.41472 * 26 17 15 28 28 O 1.42900 * 109.47048 * 65.00349 * 27 26 17 29 29 C 1.46930 * 120.62663 * 179.71801 * 11 9 8 30 30 H 1.08995 * 109.47231 * 90.00358 * 1 2 3 31 31 H 1.09004 * 109.47411 * 210.00303 * 1 2 3 32 32 H 1.09006 * 109.46848 * 330.00525 * 1 2 3 33 33 H 1.07997 * 119.61844 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.41760 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.79346 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47504 * 204.99856 * 8 7 2 37 37 H 1.08997 * 109.47157 * 325.00396 * 8 7 2 38 38 H 1.09000 * 109.58660 * 246.15021 * 12 11 9 39 39 H 1.08999 * 109.58828 * 6.43433 * 12 11 9 40 40 H 1.09000 * 109.49943 * 174.58286 * 13 12 11 41 41 H 1.08999 * 109.49814 * 294.68740 * 13 12 11 42 42 H 1.09000 * 109.45704 * 58.65621 * 14 13 12 43 43 H 1.08998 * 109.45757 * 178.61093 * 14 13 12 44 44 H 0.96995 * 119.99731 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.46688 * 204.41631 * 26 17 15 46 46 H 1.08999 * 109.47011 * 324.41659 * 26 17 15 47 47 H 1.09004 * 109.46764 * 185.00050 * 27 26 17 48 48 H 1.08999 * 109.47257 * 304.99815 * 27 26 17 49 49 H 0.96705 * 113.99401 * 179.97438 * 28 27 26 50 50 H 1.08994 * 109.58676 * 353.42668 * 29 11 9 51 51 H 1.09006 * 109.58118 * 113.84895 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1950 0.0054 5 6 4.2266 0.0341 0.0109 6 6 3.5765 -1.1903 0.0111 7 6 2.1898 -1.2013 0.0058 8 6 1.4372 -2.5069 0.0064 9 6 1.0844 -2.8839 -1.4094 10 8 1.4124 -2.1636 -2.3284 11 7 0.4054 -4.0221 -1.6544 12 6 0.0017 -4.9051 -0.5516 13 6 -1.5059 -5.1583 -0.6493 14 6 -1.8392 -5.6990 -2.0418 15 6 -1.4541 -4.6619 -3.0992 16 1 -1.9922 -3.7330 -2.9107 17 7 -1.8022 -5.1674 -4.4294 18 6 -1.2430 -6.3302 -4.8880 19 1 -0.2327 -6.5904 -4.6087 20 6 -1.9747 -7.1746 -5.7118 21 7 -3.2900 -7.1270 -5.7013 22 14 -1.0926 -8.3785 -6.8351 23 1 0.3750 -8.2347 -6.6600 24 1 -1.4991 -9.7649 -6.4917 25 1 -1.4524 -8.0926 -8.2472 26 6 -2.7488 -4.4288 -5.2691 27 6 -2.0053 -3.3283 -6.0288 28 8 -1.0762 -3.9214 -6.9382 29 6 0.0489 -4.4000 -3.0288 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 3.9752 2.1529 0.0048 34 1 5.3057 0.0803 0.0149 35 1 4.1367 -2.1137 0.0156 36 1 2.0608 -3.2857 0.4452 37 1 0.5241 -2.3996 0.5920 38 1 0.5368 -5.8517 -0.6269 39 1 0.2334 -4.4291 0.4012 40 1 -1.8020 -5.8878 0.1046 41 1 -2.0432 -4.2245 -0.4836 42 1 -1.2826 -6.6197 -2.2165 43 1 -2.9079 -5.9033 -2.1058 44 1 -3.8012 -7.7168 -6.2772 45 1 -3.2127 -5.1118 -5.9806 46 1 -3.5185 -3.9805 -4.6410 47 1 -2.7216 -2.7229 -6.5844 48 1 -1.4683 -2.6972 -5.3207 49 1 -0.5686 -3.2809 -7.4552 50 1 0.3095 -3.5898 -3.7097 51 1 0.5881 -5.3045 -3.3104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316747812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:32 Heat of formation + Delta-G solvation = -48.332352 kcal Electronic energy + Delta-G solvation = -31947.586207 eV Core-core repulsion = 27846.643579 eV Total energy + Delta-G solvation = -4100.942628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68195 -40.73204 -38.99391 -37.72211 -36.27900 -34.83638 -33.88937 -33.74631 -32.88723 -31.39798 -29.87415 -28.98098 -28.13828 -26.08663 -25.95090 -23.87283 -23.47059 -22.86731 -22.29804 -21.36305 -19.83331 -18.42989 -18.27809 -18.07126 -17.77818 -17.32148 -16.94229 -16.65651 -16.20667 -16.05005 -15.65742 -15.45598 -15.33999 -15.24469 -14.81974 -14.49411 -14.32634 -14.16333 -14.07992 -13.91536 -13.80062 -13.57193 -13.49650 -13.20988 -13.09213 -12.92734 -12.85327 -12.70831 -12.50680 -12.29768 -12.18504 -11.93309 -11.71769 -11.58985 -11.57219 -11.24538 -10.97733 -10.74313 -10.56168 -10.41816 -10.38067 -9.70590 -9.62146 -8.51564 -7.76961 -5.28991 0.16473 0.37780 1.43499 1.49472 1.56732 1.66964 2.05459 2.56731 2.85840 3.34506 3.42195 3.54312 3.61904 3.73075 3.76509 3.91558 3.96021 4.10826 4.13591 4.18484 4.19236 4.34438 4.41163 4.46888 4.50195 4.53739 4.63381 4.66937 4.69649 4.70712 4.73580 4.79386 4.84492 4.88144 4.95628 4.99711 5.02680 5.12834 5.16579 5.25976 5.26892 5.33288 5.49555 5.56656 5.66726 5.73046 5.81705 5.83693 6.50938 6.54310 7.07966 7.11121 7.22692 7.24288 7.93266 8.42037 9.22235 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.002857 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.619314 B = 9798.586209 C =10165.682279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.120 3.880 3 N -0.517 5.517 4 C 0.084 3.916 5 C -0.179 4.179 6 C -0.072 4.072 7 C -0.128 4.128 8 C -0.090 4.090 9 C 0.511 3.489 10 O -0.589 6.589 11 N -0.605 5.605 12 C 0.103 3.897 13 C -0.124 4.124 14 C -0.114 4.114 15 C 0.167 3.833 16 H 0.049 0.951 17 N -0.583 5.583 18 C -0.225 4.225 19 H 0.049 0.951 20 C -0.033 4.033 21 N -0.919 5.919 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.298 1.298 26 C 0.138 3.862 27 C 0.068 3.932 28 O -0.573 6.573 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.247 0.753 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.374 0.626 50 H 0.052 0.948 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 10.873 17.876 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.017 4.017 3 N -0.227 5.227 4 C -0.073 4.073 5 C -0.199 4.199 6 C -0.098 4.098 7 C -0.130 4.130 8 C -0.130 4.130 9 C 0.301 3.699 10 O -0.469 6.469 11 N -0.337 5.337 12 C -0.018 4.018 13 C -0.162 4.162 14 C -0.153 4.153 15 C 0.059 3.941 16 H 0.067 0.933 17 N -0.303 5.303 18 C -0.355 4.355 19 H 0.066 0.934 20 C -0.229 4.229 21 N -0.565 5.565 22 Si 0.775 3.225 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.226 1.226 26 C 0.012 3.988 27 C -0.012 4.012 28 O -0.378 6.378 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.193 0.807 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.220 0.780 50 H 0.071 0.929 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.197 11.365 17.573 22.859 hybrid contribution 0.829 -0.938 -1.804 2.196 sum 10.025 10.427 15.768 21.398 Atomic orbital electron populations 1.20796 0.88472 1.04496 1.02544 1.21369 0.97675 0.88225 0.94405 1.67503 1.11405 1.29840 1.13978 1.23203 0.89127 1.00066 0.94864 1.22417 1.02848 0.92785 1.01824 1.21837 0.93552 0.99863 0.94517 1.20323 0.94963 0.95246 1.02496 1.20755 1.03632 0.95630 0.92937 1.21142 0.76973 0.79740 0.92052 1.90696 1.55565 1.52406 1.48242 1.48301 1.54943 1.22557 1.07937 1.22088 0.95307 0.94719 0.89694 1.21917 0.95751 1.02238 0.96310 1.21772 0.99993 0.98718 0.94830 1.20631 0.92464 0.95235 0.85765 0.93285 1.43851 1.50977 1.23309 1.12116 1.18872 0.94288 0.96502 1.25879 0.93365 1.25438 0.95296 0.99049 1.03074 1.70089 1.05276 1.40743 1.40353 0.85564 0.78734 0.78724 0.79429 1.20063 1.21929 1.22582 1.21010 0.90853 0.92807 0.94171 1.22888 0.91210 0.95915 0.91153 1.86742 1.56619 1.37665 1.56746 1.21642 0.97281 0.98723 0.82586 0.92112 0.88476 0.90057 0.80650 0.81960 0.82864 0.84548 0.84733 0.90693 0.85633 0.88402 0.91097 0.93546 0.94289 0.94418 0.90747 0.93826 0.93554 0.95676 0.78028 0.92949 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.77 71.24 0.70 -1.50 16 2 C 0.12 2.94 6.78 42.54 0.29 3.23 16 3 N -0.52 -13.35 10.27 -183.89 -1.89 -15.24 16 4 C 0.08 1.70 11.18 84.68 0.95 2.65 16 5 C -0.18 -3.08 10.11 22.36 0.23 -2.86 16 6 C -0.07 -1.35 9.84 22.47 0.22 -1.13 16 7 C -0.13 -2.73 4.39 -19.77 -0.09 -2.82 16 8 C -0.09 -1.50 3.70 29.10 0.11 -1.40 16 9 C 0.51 14.11 7.69 87.66 0.67 14.78 16 10 O -0.59 -22.43 15.45 -3.03 -0.05 -22.47 16 11 N -0.60 -16.75 2.98 -819.78 -2.44 -19.19 16 12 C 0.10 1.94 6.34 86.36 0.55 2.48 16 13 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 14 C -0.11 -3.98 5.12 30.62 0.16 -3.82 16 15 C 0.17 6.61 2.77 44.92 0.12 6.73 16 16 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 17 N -0.58 -28.22 2.35 -678.47 -1.59 -29.81 16 18 C -0.22 -12.14 8.06 84.03 0.68 -11.46 16 19 H 0.05 2.66 6.73 -2.91 -0.02 2.64 16 20 C -0.03 -1.82 4.90 84.86 0.42 -1.40 16 21 N -0.92 -53.58 11.36 21.65 0.25 -53.33 16 22 Si 0.95 46.54 29.61 68.60 2.03 48.57 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 26 C 0.14 6.58 5.57 86.38 0.48 7.06 16 27 C 0.07 2.80 7.39 71.98 0.53 3.33 16 28 O -0.57 -25.07 13.40 -148.98 -2.00 -27.06 16 29 C 0.12 4.65 5.74 86.21 0.50 5.14 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.44 6.01 -2.39 -0.01 1.43 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 1.37 7.86 -2.39 -0.02 1.35 16 37 H 0.14 1.50 5.72 -2.39 -0.01 1.48 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.13 1.20 5.93 -2.39 -0.01 1.19 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.82 7.70 -2.39 -0.02 1.80 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.07 4.14 5.35 -2.39 -0.01 4.13 16 46 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 47 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.37 12.12 9.12 -74.05 -0.68 11.45 16 50 H 0.05 2.30 7.01 -2.39 -0.02 2.28 16 51 H 0.05 2.02 6.77 -2.38 -0.02 2.00 16 Total: -1.00 -78.99 403.92 1.27 -77.73 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.27 Total: 24.31 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 6.69 Total: 16.50 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.68 Total: -117.58 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -2.04 Total: -49.54 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.99 1.27 -77.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.396 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds