Wall clock time and date at job start Wed Apr 1 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31887 * 119.61543 * 2 1 4 4 C 1.31857 * 121.72033 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.77107 * 0.02562 * 4 3 2 6 6 C 1.38632 * 119.15449 * 359.77007 * 5 4 3 7 7 C 1.38183 * 119.62020 * 180.02562 * 2 1 3 8 8 C 1.50708 * 120.41434 * 359.97438 * 7 2 1 9 9 C 1.50700 * 109.47400 * 84.99828 * 8 7 2 10 10 O 1.21280 * 119.99508 * 359.97438 * 9 8 7 11 11 N 1.34765 * 119.99790 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.63465 * 0.02562 * 11 9 8 13 13 C 1.53199 * 108.77270 * 233.62958 * 12 11 9 14 14 C 1.53039 * 109.34037 * 305.34149 * 13 12 11 15 15 C 1.53109 * 109.49879 * 61.35199 * 14 13 12 16 16 H 1.09000 * 109.48993 * 58.61232 * 15 14 13 17 17 N 1.46499 * 109.51203 * 178.68532 * 15 14 13 18 18 C 1.36932 * 120.00192 * 59.87118 * 17 15 14 19 19 H 1.08000 * 120.00481 * 323.08264 * 18 17 15 20 20 C 1.38812 * 119.99905 * 143.08360 * 18 17 15 21 21 N 1.31625 * 119.99758 * 160.31256 * 20 18 17 22 22 Si 1.86801 * 120.00166 * 340.30878 * 20 18 17 23 23 H 1.48501 * 109.46885 * 95.24689 * 22 20 18 24 24 H 1.48506 * 109.47137 * 215.24376 * 22 20 18 25 25 H 1.48495 * 109.47229 * 335.24891 * 22 20 18 26 26 C 1.46500 * 119.99783 * 239.86810 * 17 15 14 27 27 C 1.52998 * 109.46929 * 86.90173 * 26 17 15 28 28 O 1.42894 * 109.47291 * 63.65569 * 27 26 17 29 29 C 1.46934 * 120.63033 * 180.02562 * 11 9 8 30 30 H 1.08996 * 109.47375 * 269.97393 * 1 2 3 31 31 H 1.08999 * 109.47083 * 29.98124 * 1 2 3 32 32 H 1.09001 * 109.46972 * 149.97630 * 1 2 3 33 33 H 1.08002 * 119.61177 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.42483 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.78218 * 180.23266 * 6 5 4 36 36 H 1.09000 * 109.46669 * 324.99454 * 8 7 2 37 37 H 1.09001 * 109.46510 * 205.00143 * 8 7 2 38 38 H 1.08999 * 109.59365 * 113.84043 * 12 11 9 39 39 H 1.08999 * 109.58808 * 353.40861 * 12 11 9 40 40 H 1.08996 * 109.49755 * 65.31802 * 13 12 11 41 41 H 1.09003 * 109.49539 * 185.38063 * 13 12 11 42 42 H 1.08996 * 109.46136 * 181.40155 * 14 13 12 43 43 H 1.09001 * 109.46190 * 301.36659 * 14 13 12 44 44 H 0.97004 * 119.99846 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47179 * 206.90426 * 26 17 15 46 46 H 1.08998 * 109.47163 * 326.90266 * 26 17 15 47 47 H 1.09002 * 109.47347 * 183.65394 * 27 26 17 48 48 H 1.08998 * 109.47309 * 303.65137 * 27 26 17 49 49 H 0.96702 * 114.00826 * 179.97438 * 28 27 26 50 50 H 1.09000 * 109.58761 * 246.15731 * 29 11 9 51 51 H 1.09000 * 109.58474 * 6.58471 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.2267 0.0341 0.0005 6 6 3.5765 -1.1903 0.0049 7 6 2.1899 -1.2012 -0.0005 8 6 1.4372 -2.5069 -0.0005 9 6 1.0784 -2.8799 -1.4159 10 8 1.4016 -2.1566 -2.3341 11 7 0.3983 -4.0173 -1.6611 12 6 -0.0007 -4.9034 -0.5592 13 6 0.5075 -6.3180 -0.8554 14 6 0.0027 -6.7602 -2.2308 15 6 0.5498 -5.8152 -3.3041 16 1 1.6393 -5.8236 -3.2750 17 7 0.0924 -6.2566 -4.6240 18 6 -1.2478 -6.3278 -4.8957 19 1 -1.9378 -6.6500 -4.1298 20 6 -1.7197 -5.9859 -6.1556 21 7 -2.9031 -6.4049 -6.5511 22 14 -0.6753 -4.9311 -7.2896 23 1 0.0942 -5.8061 -8.2101 24 1 -1.5552 -4.0332 -8.0801 25 1 0.2653 -4.1155 -6.4801 26 6 1.0688 -6.6218 -5.6532 27 6 1.4454 -8.0966 -5.4985 28 8 0.2926 -8.9092 -5.7277 29 6 0.0418 -4.3948 -3.0356 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 3.9752 2.1529 0.0001 34 1 5.3057 0.0803 0.0013 35 1 4.1368 -2.1136 0.0087 36 1 0.5267 -2.4013 0.5894 37 1 2.0628 -3.2869 0.4334 38 1 -1.0873 -4.9156 -0.4752 39 1 0.4360 -4.5462 0.3734 40 1 1.5974 -6.3217 -0.8493 41 1 0.1371 -7.0045 -0.0940 42 1 0.3424 -7.7760 -2.4330 43 1 -1.0869 -6.7325 -2.2440 44 1 -3.2328 -6.1663 -7.4317 45 1 0.6349 -6.4591 -6.6398 46 1 1.9610 -6.0054 -5.5426 47 1 2.2195 -8.3518 -6.2223 48 1 1.8192 -8.2723 -4.4898 49 1 0.4579 -9.8585 -5.6463 50 1 -1.0415 -4.3655 -3.1533 51 1 0.5064 -3.7018 -3.7370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316747813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:37 Heat of formation + Delta-G solvation = -18.144215 kcal Electronic energy + Delta-G solvation = -31873.989473 eV Core-core repulsion = 27774.355901 eV Total energy + Delta-G solvation = -4099.633572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.75718 -39.66286 -37.68522 -36.34899 -34.75905 -33.91322 -33.09437 -32.25614 -31.46132 -30.29589 -28.87807 -27.65056 -27.19403 -24.93554 -24.07255 -22.83344 -22.56844 -21.97050 -21.07543 -19.81006 -18.70672 -17.14158 -16.96524 -16.73997 -16.61697 -16.40517 -15.76807 -15.34939 -15.06451 -14.83465 -14.53209 -14.34975 -13.98858 -13.70882 -13.62331 -13.35431 -13.21870 -13.14331 -12.92805 -12.79601 -12.55885 -12.52818 -12.29847 -12.23439 -12.12155 -11.80057 -11.60853 -11.43730 -11.12962 -10.81969 -10.63352 -10.50877 -10.35520 -10.05945 -9.96067 -9.65412 -9.60745 -9.56799 -9.52879 -9.16449 -8.87094 -8.42306 -8.34753 -6.81867 -5.87472 -3.30503 0.97129 1.17691 2.76694 3.16658 3.36799 3.53519 3.56835 3.68622 4.19235 4.43718 4.59741 4.61131 4.65534 4.74235 4.78196 4.83933 5.04715 5.08984 5.14214 5.18142 5.21741 5.30490 5.41849 5.45217 5.47041 5.50383 5.56499 5.61800 5.69992 5.80979 5.86406 5.91861 5.95501 6.00000 6.03176 6.11228 6.11432 6.13022 6.21261 6.32482 6.45796 6.54976 6.59597 6.67717 6.72980 6.91660 6.96628 7.64391 7.89611 8.10252 8.35701 8.41428 8.48499 9.01654 9.80509 10.15235 11.28223 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.002996 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.205165 B = 9343.503673 C = 9847.785418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.098 3.902 5 C -0.180 4.180 6 C -0.062 4.062 7 C -0.113 4.113 8 C -0.099 4.099 9 C 0.511 3.489 10 O -0.536 6.536 11 N -0.606 5.606 12 C 0.106 3.894 13 C -0.132 4.132 14 C -0.125 4.125 15 C 0.170 3.830 16 H 0.051 0.949 17 N -0.590 5.590 18 C -0.250 4.250 19 H 0.079 0.921 20 C 0.042 3.958 21 N -0.901 5.901 22 Si 0.874 3.126 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.132 3.868 27 C 0.063 3.937 28 O -0.535 6.535 29 C 0.102 3.898 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.260 0.740 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.023 0.977 48 H 0.031 0.969 49 H 0.353 0.647 50 H 0.082 0.918 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.366 4.513 17.591 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 N -0.195 5.195 4 C -0.059 4.059 5 C -0.200 4.200 6 C -0.088 4.088 7 C -0.115 4.115 8 C -0.140 4.140 9 C 0.298 3.702 10 O -0.413 6.413 11 N -0.340 5.340 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.165 4.165 15 C 0.062 3.938 16 H 0.069 0.931 17 N -0.311 5.311 18 C -0.379 4.379 19 H 0.096 0.904 20 C -0.158 4.158 21 N -0.542 5.542 22 Si 0.705 3.295 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.006 3.994 27 C -0.018 4.018 28 O -0.336 6.336 29 C -0.021 4.021 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.196 0.804 50 H 0.100 0.900 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.623 6.294 16.846 21.413 hybrid contribution 1.472 -0.968 -0.764 1.921 sum 13.096 5.326 16.082 21.412 Atomic orbital electron populations 1.20760 0.89024 1.04022 1.02657 1.21069 0.96884 0.87695 0.93585 1.67519 1.10071 1.29120 1.12799 1.22694 0.89518 0.98383 0.95276 1.22049 1.01305 0.93404 1.03234 1.21423 0.93580 0.98551 0.95221 1.20125 0.94211 0.95022 1.02147 1.20685 1.01833 0.95363 0.96094 1.20342 0.78221 0.81081 0.90582 1.90732 1.53678 1.50706 1.46194 1.48287 1.55360 1.21461 1.08878 1.21773 1.00440 0.90499 0.88993 1.21935 1.00736 0.95479 0.98947 1.21955 1.02207 0.99627 0.92664 1.20633 0.95767 0.90908 0.86453 0.93115 1.44004 1.03235 1.74931 1.08940 1.18523 0.81330 1.39235 0.98785 0.90353 1.25320 0.95124 0.97821 0.97506 1.69835 1.19617 1.45308 1.19468 0.87007 0.80093 0.81329 0.81041 1.21676 1.23194 1.19453 1.21357 0.92566 0.91029 0.94472 1.22864 0.87262 0.94680 0.96977 1.86935 1.34091 1.18630 1.93940 1.22338 1.01943 0.97770 0.80095 0.90366 0.90247 0.90699 0.82919 0.84913 0.85036 0.87689 0.87995 0.90992 0.90474 0.92212 0.91160 0.92156 0.90983 0.92975 0.91850 0.93110 0.95899 0.95096 0.80372 0.89977 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.39 36.00 0.34 -0.86 16 2 C 0.15 1.90 6.78 -82.59 -0.56 1.34 16 3 N -0.49 -6.56 10.27 -9.47 -0.10 -6.66 16 4 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 5 C -0.18 -1.79 10.11 -39.44 -0.40 -2.19 16 6 C -0.06 -0.67 9.84 -39.28 -0.39 -1.05 16 7 C -0.11 -1.35 4.39 -104.48 -0.46 -1.81 16 8 C -0.10 -1.02 3.51 -29.03 -0.10 -1.12 16 9 C 0.51 7.61 6.92 -10.99 -0.08 7.53 16 10 O -0.54 -10.49 15.45 5.56 0.09 -10.40 16 11 N -0.61 -8.90 2.97 -172.75 -0.51 -9.41 16 12 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 14 C -0.13 -2.00 5.11 -26.65 -0.14 -2.14 16 15 C 0.17 3.17 2.78 -67.76 -0.19 2.99 16 16 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 17 N -0.59 -13.33 2.00 -165.47 -0.33 -13.67 16 18 C -0.25 -6.71 8.23 -15.06 -0.12 -6.83 16 19 H 0.08 2.27 7.02 -52.49 -0.37 1.90 16 20 C 0.04 1.22 5.34 -17.43 -0.09 1.13 16 21 N -0.90 -27.68 13.97 55.49 0.78 -26.91 16 22 Si 0.87 22.82 24.82 -169.99 -4.22 18.60 16 23 H -0.29 -7.42 6.70 56.52 0.38 -7.04 16 24 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 25 H -0.27 -6.93 7.10 56.52 0.40 -6.53 16 26 C 0.13 2.84 4.73 -4.04 -0.02 2.82 16 27 C 0.06 1.16 7.40 37.16 0.27 1.43 16 28 O -0.53 -11.06 13.22 -35.23 -0.47 -11.52 16 29 C 0.10 1.92 5.76 -3.69 -0.02 1.90 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.87 6.15 -51.93 -0.32 0.55 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.10 0.85 6.81 -51.93 -0.35 0.50 16 37 H 0.10 0.79 7.61 -51.93 -0.40 0.39 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.06 1.55 3.12 -51.93 -0.16 1.39 16 46 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.35 5.27 9.12 45.56 0.42 5.68 16 50 H 0.08 1.71 7.51 -51.93 -0.39 1.32 16 51 H 0.08 1.82 7.01 -51.93 -0.36 1.46 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -36.42 398.29 -8.34 -44.76 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.24 Total: 5.73 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.33 Total: 3.47 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.17 Total: -56.64 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.38 Total: -21.92 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.22 Total: 18.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.42 -8.34 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.613 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds